Clone BO12306 Report

Search the DGRC for BO12306

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptphr-RA
Protein status:BO12306.pep: validated full length
Sequenced Size:1699

Clone Sequence Records

BO12306.3prime Sequence

852 bp (850 high quality bases) assembled on 2006-04-20

> BO12306.3prime
ATGGTCTAGAAAGCTTGCTTTCTTCTTGTGCACCTTACCGCCGTATCGCA
TGACAAAGGCATTTACATCGAATTTGCGACGGCATCCCTGATAGTTCATG
TACCTAACCTTACCGAAGATAGCCCGCTCCTTCCAGCCCATGTCATGGAC
GCCGCCAATGGACCACATGCAGCCCACATAGCCGTTGGGGTCGCGACCAT
CCAGACTGTACTTGTCGTTCAGCAGGATTGCGTACTCCAACGCATGCTCC
GGTGTCGCTGTCCATTCCAGAATCTTTTTGGCCCAGTACATGCGCAAAAA
GCCGTGCATCTTTCCCTCGCGTACCAGCTGCAGTTGCGCCGAGTTCCACA
GGTCGTCATAAGTGAGAGACTTTTCTAGTTCTTCTAAGCTGTAGCAGGGA
TCTCGCTTGTCCTTGCGATGTGCATCTAGCGTTTGATATGCCCAAGAACT
TAGACCTTTAAGACTATCATAGTGCTCGTTGTAGAAGCAAAAGTTATCCG
CCAGTTCGCGGCGCACAATGGCCTCCTCGCAAAACGCATCCGCCGAGGCT
TTGTGTTGTCCTCGAAACCGCTGCACCTCCAGTGCACAGCGCTGAGCCGA
AATATGACCAAAGTGCAGCCACGGCGAGAGTCCGGACAAGGCGTCTGCCG
TGGGATCGTTTCGTTTGTCATTGAAATGGCGCAAACGACGACTGCAGAAC
TCGTAGAGCTGCTGGCAGGCTGCTTTATACCCCGGCTTGGCCCACTGCAC
CTCGTCCACTTCCATGTCGCACTGCAGCGAAGCATAAGCAGCTGACCAGT
CCACGGTATTCACATTCTTGCAGCCAGTTCCATGAGGATGCCGCACAACT
GG

BO12306.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11205-PA 1668 phr-RA 832..1665 852..19 4170 100 Minus
CG11205-PB 1608 phr-RB 772..1605 852..19 4170 100 Minus
CG18853-PA 993 CG18853-RA 507..990 502..19 2420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
phr-RB 1737 CG11205-RB 869..1702 852..19 4170 100 Minus
phr-RA 1915 CG11205-RA 1047..1880 852..19 4170 100 Minus
CG18853-RA 1157 CG18853-RA 639..1122 502..19 2420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7826389..7826871 852..370 2415 100 Minus
2R 25286936 2R 7826932..7827284 371..19 1765 100 Minus
2R 25286936 2R 7830042..7830394 371..19 1765 100 Minus
2R 25286936 2R 7829849..7829981 502..370 665 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:47:04 has no hits.

BO12306.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:57 Download gff for BO12306.3prime
Subject Subject Range Query Range Percent Splice Strand
phr-PA 832..1668 15..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:12 Download gff for BO12306.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11205-PB 772..1608 15..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:27:43 Download gff for BO12306.3prime
Subject Subject Range Query Range Percent Splice Strand
phr-RA 1047..1889 10..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:25 Download gff for BO12306.3prime
Subject Subject Range Query Range Percent Splice Strand
phr-RA 1047..1889 10..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:25 Download gff for BO12306.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7826389..7826871 370..852 100 -> Minus
2R 7826934..7827293 10..369 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:27:43 Download gff for BO12306.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3713894..3714376 370..852 100 -> Minus
arm_2R 3714439..3714798 10..369 98   Minus

BO12306.5prime Sequence

888 bp (809 high quality bases) assembled on 2006-04-20

> BO12306.5prime
GAAGTTATCAGTCGACATGTTTACACTTGCTTCATATTGGCGCGAATCAT
TCAAGATTGTTCTTCCGCTGCAGGCGATGAAGCGTACGAAGGCGCAGAAG
GCAGGTCCTTCCAAAAAGGCAGCAAAAAACGAGAAGGCCAGCTCCGAGCC
CAAAAGTGACCAGGAAAGCAGCGATGAGGAGGCCTCCACATCGAAGGCTT
TGTTGGTTTCTAAGCCGGATTACCAAAACTTCGAGCAGTTTCTTACCCAC
TTGGAACACCAGCGAGTCTGCACGGCAGCCAACATACAGGAGTTCTCTTT
TCGAAAGAAACGAGTGCGCGTTCTGTCCAAAACCGAAGATGTAAAGGAAT
CCAGCCTAGGCGGCGTCGTCTACTGGATGTCCCGCGACGGGCGCGTACAG
GACAACTGGGCCCTGCTCTTTGCCCAGCGTCTGGCTCTCAAGCTGGAATT
ACCCTTAACTGTGGTATTTTGCCTAGTTCCCAAATTCCTGAATGCCACTA
TCAGGCACTACAAATTCATGATGGGCGGCCTGCAGGAGGTGGAGCAGCAG
TGTCGCGCCCTTGACATACCGTTTCACCTGCTGATGGGCTCCGCTGTTGA
AAAGTTACCACAATTTGTGAAATCCAAGGACATCGGAGCCGTAGTCTGTG
ACTTTGCTCCGCTGCGTTTGCCACGCCAATGGGTCGAGGATGTGGGCAAG
GCACTGCCCAAGAGCGTGCCGTTGGTGCAAGTCGATGCTCACAATGTAGT
CCCCTTGTGGGTGGCCTCCGACAAACAGGAGTACGCTGCGCGTACCATCC
GCAACAAGATCAACTCCAAGCTAGGGGAGTACCTCAGCGTATTCCCACCA
GTTGTGCGGCATCCTCATGGAACTGGCTGCAAGAATGT

BO12306.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11205-PA 1668 phr-RA 1..872 17..888 4360 100 Plus
CG11205-PB 1608 phr-RB 1..812 77..888 4060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
phr-RA 1915 CG11205-RA 216..1087 17..888 4360 100 Plus
phr-RB 1737 CG11205-RB 80..909 59..888 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7825600..7826429 59..888 4150 100 Plus
2R 25286936 2R 7825504..7825547 17..60 220 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:21:48 has no hits.

BO12306.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:58 Download gff for BO12306.5prime
Subject Subject Range Query Range Percent Splice Strand
phr-PA 1..872 17..888 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:14 Download gff for BO12306.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11205-PA 1..872 17..888 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:46:24 Download gff for BO12306.5prime
Subject Subject Range Query Range Percent Splice Strand
phr-RA 211..1087 9..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:52 Download gff for BO12306.5prime
Subject Subject Range Query Range Percent Splice Strand
phr-RA 211..1087 9..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:52 Download gff for BO12306.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7825499..7825545 9..58 92 -> Plus
2R 7825600..7826429 59..888 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:46:24 Download gff for BO12306.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3713004..3713050 9..58 92 -> Plus
arm_2R 3713105..3713934 59..888 100   Plus

BO12306.complete Sequence

1699 bp assembled on 2007-06-22

GenBank Submission: FJ632400

> BO12306.complete
GAAGTTATCAGTCGACATGTTTACACTTGCTTCATATTGGCGCGAATCAT
TCAAGATTGTTCTTCCGCTGCAGGCGATGAAGCGTACGAAGGCGCAGAAG
GCAGGTCCTTCCAAAAAGGCAGCAAAAAACGAGAAGGCCAGCTCCGAGCC
CAAAAGTGACCAGGAAAGCAGCGATGAGGAGGCCTCCACATCGAAGGCTT
TGTTGGTTTCTAAGCCGGATTACCAAAACTTCGAGCAGTTTCTTACCCAC
TTGGAACACCAGCGAGTCTGCACGGCAGCCAACATACAGGAGTTCTCTTT
TCGAAAGAAACGAGTGCGCGTTCTGTCCAAAACCGAAGATGTAAAGGAAT
CCAGCCTAGGCGGCGTCGTCTACTGGATGTCCCGCGACGGGCGCGTACAG
GACAACTGGGCCCTGCTCTTTGCCCAGCGTCTGGCTCTCAAGCTGGAATT
ACCCTTAACTGTGGTATTTTGCCTAGTTCCCAAATTCCTGAATGCCACTA
TCAGGCACTACAAATTCATGATGGGCGGCCTGCAGGAGGTGGAGCAGCAG
TGTCGCGCCCTTGACATACCGTTTCACCTGCTGATGGGCTCCGCTGTTGA
AAAGTTACCACAATTTGTGAAATCCAAGGACATCGGAGCCGTAGTCTGTG
ACTTTGCTCCGCTGCGTTTGCCACGCCAATGGGTCGAGGATGTGGGCAAG
GCACTGCCCAAGAGCGTGCCGTTGGTGCAAGTCGATGCTCACAATGTAGT
CCCCTTGTGGGTGGCCTCCGACAAACAGGAGTACGCTGCGCGTACCATCC
GCAACAAGATCAACTCCAAGCTAGGGGAGTACCTCAGCGTATTCCCACCA
GTTGTGCGGCATCCTCATGGAACTGGCTGCAAGAATGTGAATACCGTGGA
CTGGTCAGCTGCTTATGCTTCGCTGCAGTGCGACATGGAAGTGGACGAGG
TGCAGTGGGCCAAGCCGGGGTATAAAGCAGCCTGCCAGCAGCTCTACGAG
TTCTGCAGTCGTCGTTTGCGCCATTTCAATGACAAACGAAACGATCCCAC
GGCAGACGCCTTGTCCGGACTCTCGCCGTGGCTGCACTTTGGTCATATTT
CGGCTCAGCGCTGTGCACTGGAGGTGCAGCGGTTTCGAGGACAACACAAA
GCCTCGGCGGATGCGTTTTGCGAGGAGGCCATTGTGCGCCGCGAACTGGC
GGATAACTTTTGCTTCTACAACGAGCACTATGATAGTCTTAAAGGTCTAA
GTTCTTGGGCATATCAAACGCTAGATGCACATCGCAAGGACAAGCGAGAT
CCCTGCTACAGCTTAGAAGAACTAGAAAAGTCTCTCACTTATGACGACCT
GTGGAACTCGGCGCAACTGCAGCTGGTACGCGAGGGAAAGATGCACGGCT
TTTTGCGCATGTACTGGGCCAAAAAGATTCTGGAATGGACAGCGACACCG
GAGCATGCGTTGGAGTACGCAATCCTGCTGAACGACAAGTACAGTCTGGA
TGGTCGCGACCCCAACGGCTATGTGGGCTGCATGTGGTCCATTGGCGGCG
TCCATGACATGGGCTGGAAGGAGCGGGCTATCTTCGGTAAGGTTAGGTAC
ATGAACTATCAGGGATGCCGTCGCAAATTCGATGTAAATGCCTTTGTCAT
GCGATACGGCGGTAAGGTGCACAAGAAGAAAGCAAGCTTTCTAGACCAT

BO12306.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
phr-RA 1668 CG11205-PA 1..1665 17..1681 8325 100 Plus
phr-RB 1608 CG11205-PB 1..1605 77..1681 8025 100 Plus
CG18853-RA 993 CG18853-PA 507..990 1198..1681 2420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
phr-RA 1915 CG11205-RA 216..1880 17..1681 8325 100 Plus
phr-RB 1737 CG11205-RB 80..1702 59..1681 8115 100 Plus
CG18853-RA 1157 CG18853-RA 639..1122 1198..1681 2420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7825600..7826871 59..1330 6360 100 Plus
2R 25286936 2R 7826932..7827284 1329..1681 1765 100 Plus
2R 25286936 2R 7830042..7830394 1329..1681 1765 100 Plus
2R 25286936 2R 7829849..7829981 1198..1330 665 100 Plus
2R 25286936 2R 7825504..7825547 17..60 220 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:37:42 has no hits.

BO12306.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:27 Download gff for BO12306.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 1..1668 17..1685 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:08 Download gff for BO12306.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 8..1686 9..1690 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:30 Download gff for BO12306.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 222..1880 23..1683 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:27 Download gff for BO12306.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 8..1686 9..1690 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:12 Download gff for BO12306.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 222..1880 23..1683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:12 Download gff for BO12306.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7825510..7825545 23..58 100 -> Plus
2R 7825600..7826871 59..1330 100 -> Plus
2R 7826934..7827284 1331..1683 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:30 Download gff for BO12306.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3713015..3713050 23..58 100 -> Plus
arm_2R 3713105..3714376 59..1330 100 -> Plus
arm_2R 3714439..3714789 1331..1683 99   Plus

BO12306.pep Sequence

Translation from 16 to 1699

> BO12306.pep
MFTLASYWRESFKIVLPLQAMKRTKAQKAGPSKKAAKNEKASSEPKSDQE
SSDEEASTSKALLVSKPDYQNFEQFLTHLEHQRVCTAANIQEFSFRKKRV
RVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVV
FCLVPKFLNATIRHYKFMMGGLQEVEQQCRALDIPFHLLMGSAVEKLPQF
VKSKDIGAVVCDFAPLRLPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVA
SDKQEYAARTIRNKINSKLGEYLSVFPPVVRHPHGTGCKNVNTVDWSAAY
ASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS
GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCF
YNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQ
LQLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPN
GYVGCMWSIGGVHDMGWKERAIFGKVRYMNYQGCRRKFDVNAFVMRYGGK
VHKKKASFLDH

BO12306.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
phr-PA 555 CG11205-PA 1..555 1..555 2964 100 Plus
phr-PB 535 CG11205-PB 1..535 21..555 2861 100 Plus
CG18853-PA 330 CG18853-PA 170..330 395..555 899 100 Plus