Clone Sequence Records
BO12306.3prime Sequence
852 bp (850 high quality bases) assembled on 2006-04-20
> BO12306.3prime
ATGGTCTAGAAAGCTTGCTTTCTTCTTGTGCACCTTACCGCCGTATCGCA
TGACAAAGGCATTTACATCGAATTTGCGACGGCATCCCTGATAGTTCATG
TACCTAACCTTACCGAAGATAGCCCGCTCCTTCCAGCCCATGTCATGGAC
GCCGCCAATGGACCACATGCAGCCCACATAGCCGTTGGGGTCGCGACCAT
CCAGACTGTACTTGTCGTTCAGCAGGATTGCGTACTCCAACGCATGCTCC
GGTGTCGCTGTCCATTCCAGAATCTTTTTGGCCCAGTACATGCGCAAAAA
GCCGTGCATCTTTCCCTCGCGTACCAGCTGCAGTTGCGCCGAGTTCCACA
GGTCGTCATAAGTGAGAGACTTTTCTAGTTCTTCTAAGCTGTAGCAGGGA
TCTCGCTTGTCCTTGCGATGTGCATCTAGCGTTTGATATGCCCAAGAACT
TAGACCTTTAAGACTATCATAGTGCTCGTTGTAGAAGCAAAAGTTATCCG
CCAGTTCGCGGCGCACAATGGCCTCCTCGCAAAACGCATCCGCCGAGGCT
TTGTGTTGTCCTCGAAACCGCTGCACCTCCAGTGCACAGCGCTGAGCCGA
AATATGACCAAAGTGCAGCCACGGCGAGAGTCCGGACAAGGCGTCTGCCG
TGGGATCGTTTCGTTTGTCATTGAAATGGCGCAAACGACGACTGCAGAAC
TCGTAGAGCTGCTGGCAGGCTGCTTTATACCCCGGCTTGGCCCACTGCAC
CTCGTCCACTTCCATGTCGCACTGCAGCGAAGCATAAGCAGCTGACCAGT
CCACGGTATTCACATTCTTGCAGCCAGTTCCATGAGGATGCCGCACAACT
GG
BO12306.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11205-PA | 1668 | phr-RA | 832..1665 | 852..19 | 4170 | 100 | Minus |
CG11205-PB | 1608 | phr-RB | 772..1605 | 852..19 | 4170 | 100 | Minus |
CG18853-PA | 993 | CG18853-RA | 507..990 | 502..19 | 2420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phr-RB | 1737 | CG11205-RB | 869..1702 | 852..19 | 4170 | 100 | Minus |
phr-RA | 1915 | CG11205-RA | 1047..1880 | 852..19 | 4170 | 100 | Minus |
CG18853-RA | 1157 | CG18853-RA | 639..1122 | 502..19 | 2420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7826389..7826871 | 852..370 | 2415 | 100 | Minus |
2R | 25286936 | 2R | 7826932..7827284 | 371..19 | 1765 | 100 | Minus |
2R | 25286936 | 2R | 7830042..7830394 | 371..19 | 1765 | 100 | Minus |
2R | 25286936 | 2R | 7829849..7829981 | 502..370 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:47:04 has no hits.
BO12306.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:57 Download gff for
BO12306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phr-PA | 832..1668 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:12 Download gff for
BO12306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11205-PB | 772..1608 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:27:43 Download gff for
BO12306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phr-RA | 1047..1889 | 10..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:25 Download gff for
BO12306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phr-RA | 1047..1889 | 10..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:25 Download gff for
BO12306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7826389..7826871 | 370..852 | 100 | -> | Minus |
2R | 7826934..7827293 | 10..369 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:27:43 Download gff for
BO12306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3713894..3714376 | 370..852 | 100 | -> | Minus |
arm_2R | 3714439..3714798 | 10..369 | 98 | | Minus |
BO12306.5prime Sequence
888 bp (809 high quality bases) assembled on 2006-04-20
> BO12306.5prime
GAAGTTATCAGTCGACATGTTTACACTTGCTTCATATTGGCGCGAATCAT
TCAAGATTGTTCTTCCGCTGCAGGCGATGAAGCGTACGAAGGCGCAGAAG
GCAGGTCCTTCCAAAAAGGCAGCAAAAAACGAGAAGGCCAGCTCCGAGCC
CAAAAGTGACCAGGAAAGCAGCGATGAGGAGGCCTCCACATCGAAGGCTT
TGTTGGTTTCTAAGCCGGATTACCAAAACTTCGAGCAGTTTCTTACCCAC
TTGGAACACCAGCGAGTCTGCACGGCAGCCAACATACAGGAGTTCTCTTT
TCGAAAGAAACGAGTGCGCGTTCTGTCCAAAACCGAAGATGTAAAGGAAT
CCAGCCTAGGCGGCGTCGTCTACTGGATGTCCCGCGACGGGCGCGTACAG
GACAACTGGGCCCTGCTCTTTGCCCAGCGTCTGGCTCTCAAGCTGGAATT
ACCCTTAACTGTGGTATTTTGCCTAGTTCCCAAATTCCTGAATGCCACTA
TCAGGCACTACAAATTCATGATGGGCGGCCTGCAGGAGGTGGAGCAGCAG
TGTCGCGCCCTTGACATACCGTTTCACCTGCTGATGGGCTCCGCTGTTGA
AAAGTTACCACAATTTGTGAAATCCAAGGACATCGGAGCCGTAGTCTGTG
ACTTTGCTCCGCTGCGTTTGCCACGCCAATGGGTCGAGGATGTGGGCAAG
GCACTGCCCAAGAGCGTGCCGTTGGTGCAAGTCGATGCTCACAATGTAGT
CCCCTTGTGGGTGGCCTCCGACAAACAGGAGTACGCTGCGCGTACCATCC
GCAACAAGATCAACTCCAAGCTAGGGGAGTACCTCAGCGTATTCCCACCA
GTTGTGCGGCATCCTCATGGAACTGGCTGCAAGAATGT
BO12306.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11205-PA | 1668 | phr-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
CG11205-PB | 1608 | phr-RB | 1..812 | 77..888 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phr-RA | 1915 | CG11205-RA | 216..1087 | 17..888 | 4360 | 100 | Plus |
phr-RB | 1737 | CG11205-RB | 80..909 | 59..888 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7825600..7826429 | 59..888 | 4150 | 100 | Plus |
2R | 25286936 | 2R | 7825504..7825547 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:21:48 has no hits.
BO12306.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:31:58 Download gff for
BO12306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phr-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:14 Download gff for
BO12306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11205-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:46:24 Download gff for
BO12306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phr-RA | 211..1087 | 9..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:52 Download gff for
BO12306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phr-RA | 211..1087 | 9..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:52 Download gff for
BO12306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7825499..7825545 | 9..58 | 92 | -> | Plus |
2R | 7825600..7826429 | 59..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:46:24 Download gff for
BO12306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3713004..3713050 | 9..58 | 92 | -> | Plus |
arm_2R | 3713105..3713934 | 59..888 | 100 | | Plus |
BO12306.complete Sequence
1699 bp assembled on 2007-06-22
GenBank Submission: FJ632400
> BO12306.complete
GAAGTTATCAGTCGACATGTTTACACTTGCTTCATATTGGCGCGAATCAT
TCAAGATTGTTCTTCCGCTGCAGGCGATGAAGCGTACGAAGGCGCAGAAG
GCAGGTCCTTCCAAAAAGGCAGCAAAAAACGAGAAGGCCAGCTCCGAGCC
CAAAAGTGACCAGGAAAGCAGCGATGAGGAGGCCTCCACATCGAAGGCTT
TGTTGGTTTCTAAGCCGGATTACCAAAACTTCGAGCAGTTTCTTACCCAC
TTGGAACACCAGCGAGTCTGCACGGCAGCCAACATACAGGAGTTCTCTTT
TCGAAAGAAACGAGTGCGCGTTCTGTCCAAAACCGAAGATGTAAAGGAAT
CCAGCCTAGGCGGCGTCGTCTACTGGATGTCCCGCGACGGGCGCGTACAG
GACAACTGGGCCCTGCTCTTTGCCCAGCGTCTGGCTCTCAAGCTGGAATT
ACCCTTAACTGTGGTATTTTGCCTAGTTCCCAAATTCCTGAATGCCACTA
TCAGGCACTACAAATTCATGATGGGCGGCCTGCAGGAGGTGGAGCAGCAG
TGTCGCGCCCTTGACATACCGTTTCACCTGCTGATGGGCTCCGCTGTTGA
AAAGTTACCACAATTTGTGAAATCCAAGGACATCGGAGCCGTAGTCTGTG
ACTTTGCTCCGCTGCGTTTGCCACGCCAATGGGTCGAGGATGTGGGCAAG
GCACTGCCCAAGAGCGTGCCGTTGGTGCAAGTCGATGCTCACAATGTAGT
CCCCTTGTGGGTGGCCTCCGACAAACAGGAGTACGCTGCGCGTACCATCC
GCAACAAGATCAACTCCAAGCTAGGGGAGTACCTCAGCGTATTCCCACCA
GTTGTGCGGCATCCTCATGGAACTGGCTGCAAGAATGTGAATACCGTGGA
CTGGTCAGCTGCTTATGCTTCGCTGCAGTGCGACATGGAAGTGGACGAGG
TGCAGTGGGCCAAGCCGGGGTATAAAGCAGCCTGCCAGCAGCTCTACGAG
TTCTGCAGTCGTCGTTTGCGCCATTTCAATGACAAACGAAACGATCCCAC
GGCAGACGCCTTGTCCGGACTCTCGCCGTGGCTGCACTTTGGTCATATTT
CGGCTCAGCGCTGTGCACTGGAGGTGCAGCGGTTTCGAGGACAACACAAA
GCCTCGGCGGATGCGTTTTGCGAGGAGGCCATTGTGCGCCGCGAACTGGC
GGATAACTTTTGCTTCTACAACGAGCACTATGATAGTCTTAAAGGTCTAA
GTTCTTGGGCATATCAAACGCTAGATGCACATCGCAAGGACAAGCGAGAT
CCCTGCTACAGCTTAGAAGAACTAGAAAAGTCTCTCACTTATGACGACCT
GTGGAACTCGGCGCAACTGCAGCTGGTACGCGAGGGAAAGATGCACGGCT
TTTTGCGCATGTACTGGGCCAAAAAGATTCTGGAATGGACAGCGACACCG
GAGCATGCGTTGGAGTACGCAATCCTGCTGAACGACAAGTACAGTCTGGA
TGGTCGCGACCCCAACGGCTATGTGGGCTGCATGTGGTCCATTGGCGGCG
TCCATGACATGGGCTGGAAGGAGCGGGCTATCTTCGGTAAGGTTAGGTAC
ATGAACTATCAGGGATGCCGTCGCAAATTCGATGTAAATGCCTTTGTCAT
GCGATACGGCGGTAAGGTGCACAAGAAGAAAGCAAGCTTTCTAGACCAT
BO12306.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phr-RA | 1668 | CG11205-PA | 1..1665 | 17..1681 | 8325 | 100 | Plus |
phr-RB | 1608 | CG11205-PB | 1..1605 | 77..1681 | 8025 | 100 | Plus |
CG18853-RA | 993 | CG18853-PA | 507..990 | 1198..1681 | 2420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phr-RA | 1915 | CG11205-RA | 216..1880 | 17..1681 | 8325 | 100 | Plus |
phr-RB | 1737 | CG11205-RB | 80..1702 | 59..1681 | 8115 | 100 | Plus |
CG18853-RA | 1157 | CG18853-RA | 639..1122 | 1198..1681 | 2420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7825600..7826871 | 59..1330 | 6360 | 100 | Plus |
2R | 25286936 | 2R | 7826932..7827284 | 1329..1681 | 1765 | 100 | Plus |
2R | 25286936 | 2R | 7830042..7830394 | 1329..1681 | 1765 | 100 | Plus |
2R | 25286936 | 2R | 7829849..7829981 | 1198..1330 | 665 | 100 | Plus |
2R | 25286936 | 2R | 7825504..7825547 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:37:42 has no hits.
BO12306.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:27 Download gff for
BO12306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phr-RA | 1..1668 | 17..1685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:08 Download gff for
BO12306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phr-RA | 8..1686 | 9..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:30 Download gff for
BO12306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phr-RA | 222..1880 | 23..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:27 Download gff for
BO12306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phr-RA | 8..1686 | 9..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:12 Download gff for
BO12306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
phr-RA | 222..1880 | 23..1683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:12 Download gff for
BO12306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7825510..7825545 | 23..58 | 100 | -> | Plus |
2R | 7825600..7826871 | 59..1330 | 100 | -> | Plus |
2R | 7826934..7827284 | 1331..1683 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:30 Download gff for
BO12306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3713015..3713050 | 23..58 | 100 | -> | Plus |
arm_2R | 3713105..3714376 | 59..1330 | 100 | -> | Plus |
arm_2R | 3714439..3714789 | 1331..1683 | 99 | | Plus |
BO12306.pep Sequence
Translation from 16 to 1699
> BO12306.pep
MFTLASYWRESFKIVLPLQAMKRTKAQKAGPSKKAAKNEKASSEPKSDQE
SSDEEASTSKALLVSKPDYQNFEQFLTHLEHQRVCTAANIQEFSFRKKRV
RVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVV
FCLVPKFLNATIRHYKFMMGGLQEVEQQCRALDIPFHLLMGSAVEKLPQF
VKSKDIGAVVCDFAPLRLPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVA
SDKQEYAARTIRNKINSKLGEYLSVFPPVVRHPHGTGCKNVNTVDWSAAY
ASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS
GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCF
YNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQ
LQLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPN
GYVGCMWSIGGVHDMGWKERAIFGKVRYMNYQGCRRKFDVNAFVMRYGGK
VHKKKASFLDH
BO12306.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
phr-PA | 555 | CG11205-PA | 1..555 | 1..555 | 2964 | 100 | Plus |
phr-PB | 535 | CG11205-PB | 1..535 | 21..555 | 2861 | 100 | Plus |
CG18853-PA | 330 | CG18853-PA | 170..330 | 395..555 | 899 | 100 | Plus |