Clone BO12313 Report

Search the DGRC for BO12313

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG8713-RA
Protein status:BO12313.pep: validated full length
Sequenced Size:1219

Clone Sequence Records

BO12313.3prime Sequence

911 bp (814 high quality bases) assembled on 2006-04-20

> BO12313.3prime
ATGGTCTAGAAAGCTTGCGGAGGTGCGGCACCGAAAGCAGGCCTTGAATC
CCCGCTTGATCGCCCGAATGTTGTGAACGACCTGCTCCTGCATCAAATTG
AAGCACATGGCAATCACGGCCATGCCGAGCAGCAGATATATGGCGCAGAG
AATGAAGCTAACCTCCACCTTATCCCTGTCGGCAGTTATCACACGATCGC
CTGGCACCAGATCGCCAAATCCAATGCTGCTGAGCGATATAAGGCAGAAG
TAGCTCCCATCCAGATAGTTCCAGTCCTCCCAACGACCGAAGAGCAGCGC
ACCCCACAGGATATACCCGACCATAACGAAGACGCACACAGTGACTGGCA
CTGTAATTTCATCCGTGCTGCCGCGTATTTCCCGCTCGATATCCGAATCA
GACTCGGTGTACTGAATATCCACGAGGCTGGAACTCTGGCGGGAACTTCT
GGTGTATTCGCTACTGCTGCTGTTGGAGGAGGTGGTACTGCTGGTGCTAG
TGTAGCTGCTGCTTCCCCGGGCATTCTCCATGTCGTGCATCTGGAGCGCT
CTGGCCAACTGTCGCATTTTTCGTCTCTCGCGGATTATCCGGCGCTTGGC
CACGCCGGGGCAGATGCGACATAGGCACACCTTCGAGTATATCCACTTGA
AGGACTTGGCCAGGACGTCTCCAATGTTGGACAGGTAGAGCAAGAACAGC
GGCATGCCAATTATCGCATATAGAATGGTCACCAGCTTTCCGCACTCGGA
GTGCGGCGTAATGTTCCCGTACCCGATGGTCGTGATCACCGTCAGTGAGT
AGAGAAAAGCTCCGGAGAAGCTCCACTGCTCCACGTCGGGTCCCTTCAGC
TGCTTTTTCACTATGGGCCTCTGATAATCCAGAAGCACATCGTTCACCCG
TCTTCTGTAGG

BO12313.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8713-PA 1188 CG8713-RA 293..1185 911..19 4415 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8713-RA 1978 CG8713-RA 898..1790 911..19 4435 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8095595..8095947 899..547 1750 99.7 Minus
2R 25286936 2R 8096013..8096247 547..313 1175 100 Minus
2R 25286936 2R 8096303..8096430 317..190 640 100 Minus
2R 25286936 2R 8096534..8096637 190..87 520 100 Minus
2R 25286936 2R 8096687..8096760 92..19 370 100 Minus
Blast to na_te.dros performed 2015-02-02 17:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6898 513..446 169 72.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1539..1625 511..426 162 66.7 Minus
roo 9092 roo DM_ROO 9092bp 1093..1164 515..444 162 69.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6802 513..446 160 70.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2717..2850 569..427 154 60.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2391 516..427 146 64.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2434 513..447 146 68.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6809 513..460 144 74.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2392 513..447 137 67.2 Minus
roo 9092 roo DM_ROO 9092bp 1083..1136 513..460 135 72.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6867 515..447 122 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6825 513..465 119 71.4 Minus
roo 9092 roo DM_ROO 9092bp 1069..1141 515..446 115 64.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6781 502..446 114 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..2831 512..464 110 69.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2370 491..427 109 63.1 Minus

BO12313.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:08 Download gff for BO12313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8713-PA 293..1188 18..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:27 Download gff for BO12313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8713-PA 293..1188 18..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:27:28 Download gff for BO12313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 898..1790 19..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:01 Download gff for BO12313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 898..1790 19..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:01 Download gff for BO12313.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8095595..8095947 547..899 99 -> Minus
2R 8096014..8096243 317..546 100 -> Minus
2R 8096304..8096430 190..316 100 -> Minus
2R 8096535..8096636 88..189 100 -> Minus
2R 8096692..8096760 19..87 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:27:28 Download gff for BO12313.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3984040..3984141 88..189 100 -> Minus
arm_2R 3984197..3984265 19..87 100   Minus
arm_2R 3983100..3983452 547..899 99 -> Minus
arm_2R 3983519..3983748 317..546 100 -> Minus
arm_2R 3983809..3983935 190..316 100 -> Minus

BO12313.5prime Sequence

889 bp (847 high quality bases) assembled on 2006-04-20

> BO12313.5prime
GAAGTTATCAGTCGACATGTCCTCCCGACGCAGCTCCTTCAGGCGGAGGG
AGAAGCCGGCCTTCGAGCGCTTTAAGGACCACTGCCGCCACTTCACGGCG
TTCATGTTCAGCAACGTGGGCATCATTCTACTGGTCACATTTTATATTAT
CGGCGGAGCGTTCATATTCCAGAGCATCGAGATTTTCGAGTACGAGCGGC
TCAAGTCGGAGAAGCCGCACCGGTTTATAGCACGGAACTTCAGTGGCGAG
TGCCTCAGCCGCATATGGGAGTTGACGGCGGAGAACATCAGCTTCTTCGA
CCACCACGCCTACAGGAGACGGGTGAACGATGTGCTTCTGGATTATCAGA
GGGCCATAGTGAAAAAGCAGCTGAAGGGACCCGACGTGGAGCAGTGGAGC
TTCTCCGGAGCTTTTCTCTACTCACTGACGGTGATCACGACCATCGGGTA
CGGGAACATTACGCCGCACTCCGAGTGCGGAAAGCTGGTGACCATTCTAT
ATGCGATAATTGGCATGCCGCTGTTCTTGCTCTACCTGTCCAACATTGGA
GACGTCCTGGCCAAGTCCTTCAAGTGGATATACTCGAAGGTGTGCCTATG
TCGCATCTGCCCCGGCGTGGCCAAGCGCCGGATAATCCGCGAGAGACGAA
AAATGCGACAGTTGGCCAGAGCGCTCCAGATGCACGACATGGAGAATGCC
CGGGGAAGCAGCAGCTACACTAGCACCAGCAGTACCACCTCCTCCAACAG
CAGCAGTAGCGAATACACCAGAAGTTCCCGCCAGAGTTCCAGCCTCGTGG
ATATTCAGTACACCGAGTCTGATTCGGATATCGAGCGGGAAATACGCGGC
AGCACGGATGAAATTACAGTGCCAGTCACTGTGTGCGTC

BO12313.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8713-PA 1188 CG8713-RA 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8713-RA 1978 CG8713-RA 603..1478 14..889 4380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8095595..8095947 321..673 1765 100 Plus
2R 25286936 2R 8095211..8095519 14..322 1545 100 Plus
2R 25286936 2R 8096013..8096229 673..889 1085 100 Plus
Blast to na_te.dros performed 2015-02-02 11:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6898 707..774 169 72.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1539..1625 709..794 162 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1093..1164 705..776 162 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6802 707..774 160 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2717..2850 651..793 154 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2391 704..793 146 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2434 707..773 146 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6809 707..760 144 74.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2392 707..773 137 67.2 Plus
roo 9092 roo DM_ROO 9092bp 1083..1136 707..760 135 72.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6867 705..773 122 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6825 707..755 119 71.4 Plus
roo 9092 roo DM_ROO 9092bp 1069..1141 705..774 115 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6781 718..774 114 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..2831 708..756 110 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2370 729..793 109 63.1 Plus

BO12313.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:09 Download gff for BO12313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8713-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:28 Download gff for BO12313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8713-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:17:52 Download gff for BO12313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 600..1478 9..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:01 Download gff for BO12313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 600..1478 9..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:01 Download gff for BO12313.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8095208..8095518 9..321 99 -> Plus
2R 8095596..8095947 322..673 100 -> Plus
2R 8096014..8096229 674..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:17:52 Download gff for BO12313.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3982713..3983023 9..321 99 -> Plus
arm_2R 3983101..3983452 322..673 100 -> Plus
arm_2R 3983519..3983734 674..889 100   Plus

BO12313.complete Sequence

1219 bp assembled on 2006-10-11

GenBank Submission: FJ632401

> BO12313.complete
GAAGTTATCAGTCGACATGTCCTCCCGACGCAGCTCCTTCAGGCGGAGGG
AGAAGCCGGCCTTCGAGCGCTTTAAGGACCACTGCCGCCACTTCACGGCG
TTCATGTTCAGCAACGTGGGCATCATTCTACTGGTCACATTTTATATTAT
CGGCGGAGCGTTCATATTCCAGAGCATCGAGATTTTCGAGTACGAGCGGC
TCAAGTCGGAGAAGCCGCACCGGTTTATAGCACGGAACTTCAGTGGCGAG
TGCCTCAGCCGCATATGGGAGTTGACGGCGGAGAACATCAGCTTCTTCGA
CCACCACGCCTACAGGAGACGGGTGAACGATGTGCTTCTGGATTATCAGA
GGGCCATAGTGAAAAAGCAGCTGAAGGGACCCGACGTGGAGCAGTGGAGC
TTCTCCGGAGCTTTTCTCTACTCACTGACGGTGATCACGACCATCGGGTA
CGGGAACATTACGCCGCACTCCGAGTGCGGAAAGCTGGTGACCATTCTAT
ATGCGATAATTGGCATGCCGCTGTTCTTGCTCTACCTGTCCAACATTGGA
GACGTCCTGGCCAAGTCCTTCAAGTGGATATACTCGAAGGTGTGCCTATG
TCGCATCTGCCCCGGCGTGGCCAAGCGCCGGATAATCCGCGAGAGACGAA
AAATGCGACAGTTGGCCAGAGCGCTCCAGATGCACGACATGGAGAATGCC
CGGGGAAGCAGCAGCTACACTAGCACCAGCAGTACCACCTCCTCCAACAG
CAGCAGTAGCGAATACACCAGAAGTTCCCGCCAGAGTTCCAGCCTCGTGG
ATATTCAGTACACCGAGTCTGATTCGGATATCGAGCGGGAAATACGCGGC
AGCACGGATGAAATTACAGTGCCAGTCACTGTGTGCGTCTTCGTTATGGT
CGGGTATATCCTGTGGGGTGCGCTGCTCTTCGGTCGTTGGGAGGACTGGA
ACTATCTGGATGGGAGCTACTTCTGCCTTATATCGCTCAGCAGCATTGGA
TTTGGCGATCTGGTGCCAGGCGATCGTGTGATAACTGCCGACAGGGATAA
GGTGGAGGTTAGCTTCATTCTCTGCGCCATATATCTGCTGCTCGGCATGG
CCGTGATTGCCATGTGCTTCAATTTGATGCAGGAGCAGGTCGTTCACAAC
ATTCGGGCGATCAAGCGGGGATTCAAGGCCTGCTTTCGGTGCCGCACCTC
CGCAAGCTTTCTAGACCAT

BO12313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8713-RA 1188 CG8713-PA 1..1185 17..1201 5925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8713-RA 1978 CG8713-RA 603..1790 14..1201 5940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8095595..8095947 321..673 1765 100 Plus
2R 25286936 2R 8095211..8095519 14..322 1545 100 Plus
2R 25286936 2R 8096013..8096247 673..907 1175 100 Plus
2R 25286936 2R 8096303..8096430 903..1030 640 100 Plus
2R 25286936 2R 8096534..8096637 1030..1133 520 100 Plus
2R 25286936 2R 8096687..8096760 1128..1201 370 100 Plus
Blast to na_te.dros performed 2014-11-27 20:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6898 707..774 169 72.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1539..1625 709..794 162 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1093..1164 705..776 162 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6802 707..774 160 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2717..2850 651..793 154 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2391 704..793 146 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2434 707..773 146 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6809 707..760 144 74.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2392 707..773 137 67.2 Plus
roo 9092 roo DM_ROO 9092bp 1083..1136 707..760 135 72.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6867 705..773 122 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6825 707..755 119 71.4 Plus
roo 9092 roo DM_ROO 9092bp 1069..1141 705..774 115 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6781 718..774 114 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..2831 708..756 110 69.4 Plus

BO12313.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:24 Download gff for BO12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 1..1188 17..1202 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:51 Download gff for BO12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 598..1788 9..1201 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:38 Download gff for BO12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 606..1790 17..1203 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:24 Download gff for BO12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 598..1788 9..1201 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:50 Download gff for BO12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG8713-RA 606..1790 17..1203 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:50 Download gff for BO12313.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8096535..8096636 1031..1132 100 -> Plus
2R 8096692..8096760 1133..1203 97   Plus
2R 8095214..8095518 17..321 100 -> Plus
2R 8095596..8095947 322..673 100 -> Plus
2R 8096014..8096243 674..903 100 -> Plus
2R 8096304..8096430 904..1030 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:38 Download gff for BO12313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3984040..3984141 1031..1132 100 -> Plus
arm_2R 3984197..3984265 1133..1203 97   Plus
arm_2R 3983519..3983748 674..903 100 -> Plus
arm_2R 3983809..3983935 904..1030 100 -> Plus
arm_2R 3982719..3983023 17..321 100 -> Plus
arm_2R 3983101..3983452 322..673 100 -> Plus

BO12313.pep Sequence

Translation from 16 to 1219

> BO12313.pep
MSSRRSSFRRREKPAFERFKDHCRHFTAFMFSNVGIILLVTFYIIGGAFI
FQSIEIFEYERLKSEKPHRFIARNFSGECLSRIWELTAENISFFDHHAYR
RRVNDVLLDYQRAIVKKQLKGPDVEQWSFSGAFLYSLTVITTIGYGNITP
HSECGKLVTILYAIIGMPLFLLYLSNIGDVLAKSFKWIYSKVCLCRICPG
VAKRRIIRERRKMRQLARALQMHDMENARGSSSYTSTSSTTSSNSSSSEY
TRSSRQSSSLVDIQYTESDSDIEREIRGSTDEITVPVTVCVFVMVGYILW
GALLFGRWEDWNYLDGSYFCLISLSSIGFGDLVPGDRVITADRDKVEVSF
ILCAIYLLLGMAVIAMCFNLMQEQVVHNIRAIKRGFKACFRCRTSASFLD
H

BO12313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8713-PA 395 CG8713-PA 1..395 1..395 2051 100 Plus
CG42594-PD 905 CG42594-PD 594..857 121..382 428 33.7 Plus
CG42594-PA 905 CG42594-PA 594..857 121..382 428 33.7 Plus
CG42594-PC 1039 CG42594-PC 594..857 121..382 428 33.7 Plus
CG10864-PA 389 CG10864-PA 34..365 17..389 412 29.8 Plus