Clone Sequence Records
BO12317.3prime Sequence
425 bp (424 high quality bases) assembled on 2006-04-20
> BO12317.3prime
ATGGTCTAGAAAGCTTGCGATGTGGGCGCGATTCTTGTAGTAGCACTCGA
ATAGCTGATAGGCAGTATCGCACTTATCCGCTCCCTTGGTGGCATCACAC
TTGGCCTGAACGGCCTTCACGGCATCCTCGCCGGCCAGGGGTCCCAACTT
GGCCAGAACGACATCGGGCTGGACCTCACCATTGATCAGGAATCCGATTT
TCTCCAAGAAACAATTGGCGAAGCATTTCACCTTGGGGTCACTGTCATCG
AAATTGCCGTTTCGCAAGGCGATCGCCTGATCCTTGGTGATTCCCTCCTG
CTGGGCACAAAGGGCGCCATTGGCATGGGCCACAGCCTTCTGCTCATCGG
ATAGTTGCAGCTCAGCAGCCGAAATGGCCAAAATGACGGAGAGGACAATC
AGGAACTTCATGTCGACTGATAACT
BO12317.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11218-PA | 396 | Obp56d-RA | 1..393 | 411..19 | 1965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56d-RB | 922 | CG11218-RB | 166..558 | 411..19 | 1965 | 100 | Minus |
Obp56d-RA | 591 | CG11218-RA | 50..442 | 411..19 | 1965 | 100 | Minus |
Obp56e-RB | 529 | CG8462-RB | 164..441 | 300..23 | 250 | 72.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:27:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19703288..19703632 | 19..363 | 1725 | 100 | Plus |
2R | 25286936 | 2R | 19712567..19712844 | 300..23 | 250 | 72.7 | Minus |
2R | 25286936 | 2R | 19703702..19703750 | 363..411 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:27:40 has no hits.
BO12317.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:16 Download gff for
BO12317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11218-PA | 1..396 | 15..411 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:38 Download gff for
BO12317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11218-PA | 1..396 | 15..411 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:00:15 Download gff for
BO12317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 50..447 | 13..411 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:05:00 Download gff for
BO12317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 50..447 | 13..411 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:05:00 Download gff for
BO12317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19703283..19703632 | 13..363 | 99 | <- | Plus |
2R | 19703703..19703750 | 364..411 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:00:15 Download gff for
BO12317.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15590788..15591137 | 13..363 | 99 | <- | Plus |
arm_2R | 15591208..15591255 | 364..411 | 100 | | Plus |
BO12317.5prime Sequence
425 bp (424 high quality bases) assembled on 2006-04-20
> BO12317.5prime
GAAGTTATCAGTCGACATGAAGTTCCTGATTGTCCTCTCCGTCATTTTGG
CCATTTCGGCTGCTGAGCTGCAACTATCCGATGAGCAGAAGGCTGTGGCC
CATGCCAATGGCGCCCTTTGTGCCCAGCAGGAGGGAATCACCAAGGATCA
GGCGATCGCCTTGCGAAACGGCAATTTCGATGACAGTGACCCCAAGGTGA
AATGCTTCGCCAATTGTTTCTTGGAGAAAATCGGATTCCTGATCAATGGT
GAGGTCCAGCCCGATGTCGTTCTGGCCAAGTTGGGACCCCTGGCCGGCGA
GGATGCCGTGAAGGCCGTTCAGGCCAAGTGTGATGCCACCAAGGGAGCGG
ATAAGTGCGATACTGCCTATCAGCTATTCGAGTGCTACTACAAGAATCGC
GCCCACATCGCAAGCTTTCTAGACC
BO12317.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11218-PA | 396 | Obp56d-RA | 1..393 | 17..409 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56d-RB | 922 | CG11218-RB | 166..558 | 17..409 | 1965 | 100 | Plus |
Obp56d-RA | 591 | CG11218-RA | 50..442 | 17..409 | 1965 | 100 | Plus |
Obp56e-RB | 529 | CG8462-RB | 164..441 | 128..405 | 250 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19703288..19703632 | 409..65 | 1725 | 100 | Minus |
2R | 25286936 | 2R | 19712567..19712844 | 128..405 | 250 | 72.7 | Plus |
2R | 25286936 | 2R | 19703702..19703750 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:51:21 has no hits.
BO12317.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:17 Download gff for
BO12317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11218-PA | 1..396 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:39 Download gff for
BO12317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11218-PA | 1..396 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:52 Download gff for
BO12317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 50..447 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:04 Download gff for
BO12317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 50..447 | 17..415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:04 Download gff for
BO12317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19703283..19703632 | 65..415 | 99 | <- | Minus |
2R | 19703703..19703750 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:52 Download gff for
BO12317.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15590788..15591137 | 65..415 | 99 | <- | Minus |
arm_2R | 15591208..15591255 | 17..64 | 100 | | Minus |
BO12317.complete Sequence
427 bp assembled on 2006-10-11
GenBank Submission: FJ632402
> BO12317.complete
GAAGTTATCAGTCGACATGAAGTTCCTGATTGTCCTCTCCGTCATTTTGG
CCATTTCGGCTGCTGAGCTGCAACTATCCGATGAGCAGAAGGCTGTGGCC
CATGCCAATGGCGCCCTTTGTGCCCAGCAGGAGGGAATCACCAAGGATCA
GGCGATCGCCTTGCGAAACGGCAATTTCGATGACAGTGACCCCAAGGTGA
AATGCTTCGCCAATTGTTTCTTGGAGAAAATCGGATTCCTGATCAATGGT
GAGGTCCAGCCCGATGTCGTTCTGGCCAAGTTGGGACCCCTGGCCGGCGA
GGATGCCGTGAAGGCCGTTCAGGCCAAGTGTGATGCCACCAAGGGAGCGG
ATAAGTGCGATACTGCCTATCAGCTATTCGAGTGCTACTACAAGAATCGC
GCCCACATCGCAAGCTTTCTAGACCAT
BO12317.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56d-RB | 396 | CG11218-PB | 1..393 | 17..409 | 1965 | 100 | Plus |
Obp56d-RA | 396 | CG11218-PA | 1..393 | 17..409 | 1965 | 100 | Plus |
Obp56e-RB | 396 | CG8462-PB | 112..389 | 128..405 | 250 | 72.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56d-RB | 922 | CG11218-RB | 166..558 | 17..409 | 1965 | 100 | Plus |
Obp56d-RA | 591 | CG11218-RA | 50..442 | 17..409 | 1965 | 100 | Plus |
Obp56e-RB | 529 | CG8462-RB | 164..441 | 128..405 | 250 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19703288..19703632 | 409..65 | 1725 | 100 | Minus |
2R | 25286936 | 2R | 19712567..19712844 | 128..405 | 250 | 72.7 | Plus |
2R | 25286936 | 2R | 19703702..19703750 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:28:00 has no hits.
BO12317.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:25 Download gff for
BO12317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 1..396 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:53 Download gff for
BO12317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 46..443 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:53 Download gff for
BO12317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 50..442 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:25 Download gff for
BO12317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 46..443 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:15 Download gff for
BO12317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56d-RA | 50..442 | 17..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:15 Download gff for
BO12317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19703286..19703632 | 65..411 | 99 | <- | Minus |
2R | 19703703..19703750 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:53 Download gff for
BO12317.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15590791..15591137 | 65..411 | 99 | <- | Minus |
arm_2R | 15591208..15591255 | 17..64 | 100 | | Minus |
BO12317.pep Sequence
Translation from 16 to 427
> BO12317.pep
MKFLIVLSVILAISAAELQLSDEQKAVAHANGALCAQQEGITKDQAIALR
NGNFDDSDPKVKCFANCFLEKIGFLINGEVQPDVVLAKLGPLAGEDAVKA
VQAKCDATKGADKCDTAYQLFECYYKNRAHIASFLDH
BO12317.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56d-PB | 131 | CG11218-PB | 1..131 | 1..131 | 673 | 100 | Plus |
Obp56d-PA | 131 | CG11218-PA | 1..131 | 1..131 | 673 | 100 | Plus |
Obp56e-PB | 131 | CG8462-PB | 1..129 | 1..129 | 448 | 64.3 | Plus |
Obp56e-PA | 132 | CG8462-PA | 1..130 | 1..129 | 439 | 63.8 | Plus |
Obp56a-PA | 139 | CG11797-PA | 5..128 | 3..124 | 265 | 42.7 | Plus |