Clone BO12317 Report

Search the DGRC for BO12317

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptObp56d-RA
Protein status:BO12317.pep: validated full length
Sequenced Size:427

Clone Sequence Records

BO12317.3prime Sequence

425 bp (424 high quality bases) assembled on 2006-04-20

> BO12317.3prime
ATGGTCTAGAAAGCTTGCGATGTGGGCGCGATTCTTGTAGTAGCACTCGA
ATAGCTGATAGGCAGTATCGCACTTATCCGCTCCCTTGGTGGCATCACAC
TTGGCCTGAACGGCCTTCACGGCATCCTCGCCGGCCAGGGGTCCCAACTT
GGCCAGAACGACATCGGGCTGGACCTCACCATTGATCAGGAATCCGATTT
TCTCCAAGAAACAATTGGCGAAGCATTTCACCTTGGGGTCACTGTCATCG
AAATTGCCGTTTCGCAAGGCGATCGCCTGATCCTTGGTGATTCCCTCCTG
CTGGGCACAAAGGGCGCCATTGGCATGGGCCACAGCCTTCTGCTCATCGG
ATAGTTGCAGCTCAGCAGCCGAAATGGCCAAAATGACGGAGAGGACAATC
AGGAACTTCATGTCGACTGATAACT

BO12317.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11218-PA 396 Obp56d-RA 1..393 411..19 1965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56d-RB 922 CG11218-RB 166..558 411..19 1965 100 Minus
Obp56d-RA 591 CG11218-RA 50..442 411..19 1965 100 Minus
Obp56e-RB 529 CG8462-RB 164..441 300..23 250 72.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19703288..19703632 19..363 1725 100 Plus
2R 25286936 2R 19712567..19712844 300..23 250 72.7 Minus
2R 25286936 2R 19703702..19703750 363..411 245 100 Plus
Blast to na_te.dros performed on 2015-01-31 12:27:40 has no hits.

BO12317.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:16 Download gff for BO12317.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11218-PA 1..396 15..411 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:38 Download gff for BO12317.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11218-PA 1..396 15..411 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:00:15 Download gff for BO12317.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 50..447 13..411 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:05:00 Download gff for BO12317.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 50..447 13..411 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:05:00 Download gff for BO12317.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19703283..19703632 13..363 99 <- Plus
2R 19703703..19703750 364..411 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:00:15 Download gff for BO12317.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15590788..15591137 13..363 99 <- Plus
arm_2R 15591208..15591255 364..411 100   Plus

BO12317.5prime Sequence

425 bp (424 high quality bases) assembled on 2006-04-20

> BO12317.5prime
GAAGTTATCAGTCGACATGAAGTTCCTGATTGTCCTCTCCGTCATTTTGG
CCATTTCGGCTGCTGAGCTGCAACTATCCGATGAGCAGAAGGCTGTGGCC
CATGCCAATGGCGCCCTTTGTGCCCAGCAGGAGGGAATCACCAAGGATCA
GGCGATCGCCTTGCGAAACGGCAATTTCGATGACAGTGACCCCAAGGTGA
AATGCTTCGCCAATTGTTTCTTGGAGAAAATCGGATTCCTGATCAATGGT
GAGGTCCAGCCCGATGTCGTTCTGGCCAAGTTGGGACCCCTGGCCGGCGA
GGATGCCGTGAAGGCCGTTCAGGCCAAGTGTGATGCCACCAAGGGAGCGG
ATAAGTGCGATACTGCCTATCAGCTATTCGAGTGCTACTACAAGAATCGC
GCCCACATCGCAAGCTTTCTAGACC

BO12317.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11218-PA 396 Obp56d-RA 1..393 17..409 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56d-RB 922 CG11218-RB 166..558 17..409 1965 100 Plus
Obp56d-RA 591 CG11218-RA 50..442 17..409 1965 100 Plus
Obp56e-RB 529 CG8462-RB 164..441 128..405 250 72.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19703288..19703632 409..65 1725 100 Minus
2R 25286936 2R 19712567..19712844 128..405 250 72.7 Plus
2R 25286936 2R 19703702..19703750 65..17 245 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:51:21 has no hits.

BO12317.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:17 Download gff for BO12317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11218-PA 1..396 17..413 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:39 Download gff for BO12317.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11218-PA 1..396 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:52 Download gff for BO12317.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 50..447 17..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:04 Download gff for BO12317.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 50..447 17..415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:04 Download gff for BO12317.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19703283..19703632 65..415 99 <- Minus
2R 19703703..19703750 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:52 Download gff for BO12317.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15590788..15591137 65..415 99 <- Minus
arm_2R 15591208..15591255 17..64 100   Minus

BO12317.complete Sequence

427 bp assembled on 2006-10-11

GenBank Submission: FJ632402

> BO12317.complete
GAAGTTATCAGTCGACATGAAGTTCCTGATTGTCCTCTCCGTCATTTTGG
CCATTTCGGCTGCTGAGCTGCAACTATCCGATGAGCAGAAGGCTGTGGCC
CATGCCAATGGCGCCCTTTGTGCCCAGCAGGAGGGAATCACCAAGGATCA
GGCGATCGCCTTGCGAAACGGCAATTTCGATGACAGTGACCCCAAGGTGA
AATGCTTCGCCAATTGTTTCTTGGAGAAAATCGGATTCCTGATCAATGGT
GAGGTCCAGCCCGATGTCGTTCTGGCCAAGTTGGGACCCCTGGCCGGCGA
GGATGCCGTGAAGGCCGTTCAGGCCAAGTGTGATGCCACCAAGGGAGCGG
ATAAGTGCGATACTGCCTATCAGCTATTCGAGTGCTACTACAAGAATCGC
GCCCACATCGCAAGCTTTCTAGACCAT

BO12317.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56d-RB 396 CG11218-PB 1..393 17..409 1965 100 Plus
Obp56d-RA 396 CG11218-PA 1..393 17..409 1965 100 Plus
Obp56e-RB 396 CG8462-PB 112..389 128..405 250 72.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56d-RB 922 CG11218-RB 166..558 17..409 1965 100 Plus
Obp56d-RA 591 CG11218-RA 50..442 17..409 1965 100 Plus
Obp56e-RB 529 CG8462-RB 164..441 128..405 250 72.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19703288..19703632 409..65 1725 100 Minus
2R 25286936 2R 19712567..19712844 128..405 250 72.7 Plus
2R 25286936 2R 19703702..19703750 65..17 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:28:00 has no hits.

BO12317.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:25 Download gff for BO12317.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 1..396 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:53 Download gff for BO12317.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 46..443 17..415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:53 Download gff for BO12317.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 50..442 17..411 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:25 Download gff for BO12317.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 46..443 17..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:15 Download gff for BO12317.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56d-RA 50..442 17..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:15 Download gff for BO12317.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19703286..19703632 65..411 99 <- Minus
2R 19703703..19703750 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:53 Download gff for BO12317.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15590791..15591137 65..411 99 <- Minus
arm_2R 15591208..15591255 17..64 100   Minus

BO12317.pep Sequence

Translation from 16 to 427

> BO12317.pep
MKFLIVLSVILAISAAELQLSDEQKAVAHANGALCAQQEGITKDQAIALR
NGNFDDSDPKVKCFANCFLEKIGFLINGEVQPDVVLAKLGPLAGEDAVKA
VQAKCDATKGADKCDTAYQLFECYYKNRAHIASFLDH

BO12317.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56d-PB 131 CG11218-PB 1..131 1..131 673 100 Plus
Obp56d-PA 131 CG11218-PA 1..131 1..131 673 100 Plus
Obp56e-PB 131 CG8462-PB 1..129 1..129 448 64.3 Plus
Obp56e-PA 132 CG8462-PA 1..130 1..129 439 63.8 Plus
Obp56a-PA 139 CG11797-PA 5..128 3..124 265 42.7 Plus