Clone BO12319 Report

Search the DGRC for BO12319

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG4289-RA
Protein status:BO12319.pep: validated full length
Sequenced Size:874

Clone Sequence Records

BO12319.3prime Sequence

804 bp (775 high quality bases) assembled on 2006-04-20

> BO12319.3prime
ATGGTCTAGAAAGCTTGCCATGATCTCCAAGCTGGAGTCACTATTCTTGG
TGACCACCTCTGTCTCCGACGAGCCAGACCCGGATCCAGCATCATCGCCC
TTCTCGTTGTCGTCCGACCCGCTGTGCCGGTGATGGTGATGCGGTGAGCC
GGCCAATTGCCAGGCGGGAATGGATGGCACTGCGATCGGAGCCACAGGGC
CGGCGAACTGTTTTCGGTTCAAAAGCAGGCCCTTAATGGCATCCAGATCG
CTACGGAAGTTACTAAATTCGCGGTTCAGCTGCTGGGCGTGTTCCCTTTG
CTGTGTGGTGATCAGATCCCTGACCGCCAAAATCTCCTTGTTGAGGTCGT
TGGTGCGGGTCTCTACCTTCTTGTCTATGTCGTCCAGGACTTCATCGACC
GCCTTCTTCTTGGACTTGCCGAACAGGTAGGGCGCAATGTATTGCTTCCA
GAAGATGTAGACTGCGTAGACGACTCCGCTGAACAGGGCTGCCGAATGGA
TGATTTCCCTGATCCGGCCCAAGACAGTCGGCTGCGGCTGCAGCGCGTGC
AATTGGGATCCAATGCTAATGACGGTGTTCGGATTCGGATTGGGCTTGTT
GGGGTCTTGGGTGAAAACGCCGGCCCGTTCACAGGCCAGCTGAATTTCGT
GAGCGGTGAGACCTTTGGACCGTAGGAACTGCTGCTTCTGGATAAGTGTC
GTGTGGCGCACCTTGGTGTTTTGTAGAAAACTGACTGCAGTGGTTATCAG
CGATTCTCGAGGCAATTGCTCATCTACGCCGGCCTCGACATCGTTCTGCA
CCGA

BO12319.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4289-PA 843 CG4289-RA 55..840 804..19 3930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Pex14-RA 1249 CG4289-RA 189..974 804..19 3930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20779676..20780103 446..19 2140 100 Minus
3L 28110227 3L 20779098..20779405 752..445 1525 99.7 Minus
3L 28110227 3L 20778987..20779047 804..744 290 98.4 Minus
Blast to na_te.dros performed on 2015-02-11 10:33:33 has no hits.

BO12319.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:20 Download gff for BO12319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4289-PA 56..843 15..803 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:43 Download gff for BO12319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4289-PA 56..843 15..803 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:05:56 Download gff for BO12319.3prime
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 190..977 15..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:25 Download gff for BO12319.3prime
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 190..977 15..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:25 Download gff for BO12319.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20778988..20779043 748..803 100 -> Minus
3L 20779103..20779405 445..747 100 -> Minus
3L 20779678..20780106 15..444 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:05:56 Download gff for BO12319.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20772088..20772143 748..803 100 -> Minus
arm_3L 20772203..20772505 445..747 100 -> Minus
arm_3L 20772778..20773206 15..444 99   Minus

BO12319.5prime Sequence

823 bp (806 high quality bases) assembled on 2006-04-20

> BO12319.5prime
GAAGTTATCAGTCGACATGTCCAGCAACAACACGGACACTGGGGACACCA
CCGTCATGGCGACGGCTACCTCGGTGCAGAACGATGTCGAGGCCGGCGTA
GATGAGCAATTGCCTCGAGAATCGCTGATAACCACTGCAGTCAGTTTTCT
ACAAAACACCAAGGTGCGCCACACGACACTTATCCAGAAGCAGCAGTTCC
TACGGTCCAAAGGTCTCACCGCTCACGAAATTCAGCTGGCCTGTGAACGG
GCCGGCGTTTTCACCCAAGACCCCAACAAGCCCAATCCGAATCCGAACAC
CGTCATTAGCATTGGATCCCAATTGCACGCGCTGCAGCCGCAGCCGACTG
TCTTGGGCCGGATCAGGGAAATCATCCATTCGGCAGCCCTGTTCAGCGGA
GTCGTCTACGCAGTCTACATCTTCTGGAAGCAATACATTGCGCCCTACCT
GTTCGGCAAGTCCAAGAAGAAGGCGGTCGATGAAGTCCTGGACGACATAG
ACAAGAAGGTAGAGACCCGCACCAACGACCTCAACAAGGAGATTTTGGCG
GTCAGGGATCTGATCACCACACAGCAAAGGGAACACGCCCAGCAGCTGAA
CCGCGAATTTAGTAACTTCCGTAGCGATCTGGATGCCATTAAGGGCCTGC
TTTTGAACCGAAAACAGTTCGCCGGCCCTGTGGCTCCGATCGCAGTGCCA
TCCATTCCCGCCTGGCAATTGGCCGGCTCACCGCATCACCATCACCGGCA
CAGCGGGTCGGACGACAACGAGAAGGGCGATGATGCTGGATCCGGGTCTG
GCTCGTCGGAGACAGAGGTGGTC

BO12319.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4289-PA 843 CG4289-RA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
Pex14-RA 1249 CG4289-RA 135..941 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20779676..20780070 429..823 1975 100 Plus
3L 28110227 3L 20779098..20779405 123..430 1525 99.7 Plus
3L 28110227 3L 20778933..20779047 17..131 560 99.1 Plus
Blast to na_te.dros performed on 2015-02-11 13:03:37 has no hits.

BO12319.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:21 Download gff for BO12319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4289-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:45 Download gff for BO12319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4289-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:17:19 Download gff for BO12319.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 135..941 17..823 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:58 Download gff for BO12319.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 135..941 17..823 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:58 Download gff for BO12319.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20778933..20779043 17..127 100 -> Plus
3L 20779103..20779405 128..430 100 -> Plus
3L 20779678..20780070 431..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:17:19 Download gff for BO12319.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20772033..20772143 17..127 100 -> Plus
arm_3L 20772203..20772505 128..430 100 -> Plus
arm_3L 20772778..20773170 431..823 100   Plus

BO12319.complete Sequence

874 bp assembled on 2006-10-11

GenBank Submission: FJ632403

> BO12319.complete
GAAGTTATCAGTCGACATGTCCAGCAACAACACGGACACTGGGGACACCA
CCGTCATGGCGACGGCTACCTCGGTGCAGAACGATGTCGAGGCCGGCGTA
GATGAGCAATTGCCTCGAGAATCGCTGATAACCACTGCAGTCAGTTTTCT
ACAAAACACCAAGGTGCGCCACACGACACTTATCCAGAAGCAGCAGTTCC
TACGGTCCAAAGGTCTCACCGCTCACGAAATTCAGCTGGCCTGTGAACGG
GCCGGCGTTTTCACCCAAGACCCCAACAAGCCCAATCCGAATCCGAACAC
CGTCATTAGCATTGGATCCCAATTGCACGCGCTGCAGCCGCAGCCGACTG
TCTTGGGCCGGATCAGGGAAATCATCCATTCGGCAGCCCTGTTCAGCGGA
GTCGTCTACGCAGTCTACATCTTCTGGAAGCAATACATTGCGCCCTACCT
GTTCGGCAAGTCCAAGAAGAAGGCGGTCGATGAAGTCCTGGACGACATAG
ACAAGAAGGTAGAGACCCGCACCAACGACCTCAACAAGGAGATTTTGGCG
GTCAGGGATCTGATCACCACACAGCAAAGGGAACACGCCCAGCAGCTGAA
CCGCGAATTTAGTAACTTCCGTAGCGATCTGGATGCCATTAAGGGCCTGC
TTTTGAACCGAAAACAGTTCGCCGGCCCTGTGGCTCCGATCGCAGTGCCA
TCCATTCCCGCCTGGCAATTGGCCGGCTCACCGCATCACCATCACCGGCA
CAGCGGGTCGGACGACAACGAGAAGGGCGATGATGCTGGATCCGGGTCTG
GCTCGTCGGAGACAGAGGTGGTCACCAAGAATAGTGACTCCAGCTTGGAG
ATCATGGCAAGCTTTCTAGACCAT

BO12319.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pex14-RA 843 CG4289-PA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Pex14-RA 1249 CG4289-RA 135..974 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20779676..20780103 429..856 2140 100 Plus
3L 28110227 3L 20779098..20779405 123..430 1525 99.7 Plus
3L 28110227 3L 20778933..20779047 17..131 560 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 06:40:30 has no hits.

BO12319.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:46 Download gff for BO12319.complete
Subject Subject Range Query Range Percent Splice Strand
CG4289-RA 1..843 17..860 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:52 Download gff for BO12319.complete
Subject Subject Range Query Range Percent Splice Strand
CG4289-RA 139..981 17..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:26 Download gff for BO12319.complete
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 135..974 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:46 Download gff for BO12319.complete
Subject Subject Range Query Range Percent Splice Strand
CG4289-RA 139..981 17..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:26 Download gff for BO12319.complete
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 135..974 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:26 Download gff for BO12319.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20778933..20779043 17..127 100 -> Plus
3L 20779103..20779405 128..430 100 -> Plus
3L 20779678..20780103 431..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:26 Download gff for BO12319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20772203..20772505 128..430 100 -> Plus
arm_3L 20772033..20772143 17..127 100 -> Plus
arm_3L 20772778..20773203 431..858 99   Plus

BO12319.pep Sequence

Translation from 16 to 874

> BO12319.pep
MSSNNTDTGDTTVMATATSVQNDVEAGVDEQLPRESLITTAVSFLQNTKV
RHTTLIQKQQFLRSKGLTAHEIQLACERAGVFTQDPNKPNPNPNTVISIG
SQLHALQPQPTVLGRIREIIHSAALFSGVVYAVYIFWKQYIAPYLFGKSK
KKAVDEVLDDIDKKVETRTNDLNKEILAVRDLITTQQREHAQQLNREFSN
FRSDLDAIKGLLLNRKQFAGPVAPIAVPSIPAWQLAGSPHHHHRHSGSDD
NEKGDDAGSGSGSSETEVVTKNSDSSLEIMASFLDH

BO12319.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Pex14-PA 280 CG4289-PA 1..280 1..280 1432 100 Plus