Clone Sequence Records
BO12319.3prime Sequence
804 bp (775 high quality bases) assembled on 2006-04-20
> BO12319.3prime
ATGGTCTAGAAAGCTTGCCATGATCTCCAAGCTGGAGTCACTATTCTTGG
TGACCACCTCTGTCTCCGACGAGCCAGACCCGGATCCAGCATCATCGCCC
TTCTCGTTGTCGTCCGACCCGCTGTGCCGGTGATGGTGATGCGGTGAGCC
GGCCAATTGCCAGGCGGGAATGGATGGCACTGCGATCGGAGCCACAGGGC
CGGCGAACTGTTTTCGGTTCAAAAGCAGGCCCTTAATGGCATCCAGATCG
CTACGGAAGTTACTAAATTCGCGGTTCAGCTGCTGGGCGTGTTCCCTTTG
CTGTGTGGTGATCAGATCCCTGACCGCCAAAATCTCCTTGTTGAGGTCGT
TGGTGCGGGTCTCTACCTTCTTGTCTATGTCGTCCAGGACTTCATCGACC
GCCTTCTTCTTGGACTTGCCGAACAGGTAGGGCGCAATGTATTGCTTCCA
GAAGATGTAGACTGCGTAGACGACTCCGCTGAACAGGGCTGCCGAATGGA
TGATTTCCCTGATCCGGCCCAAGACAGTCGGCTGCGGCTGCAGCGCGTGC
AATTGGGATCCAATGCTAATGACGGTGTTCGGATTCGGATTGGGCTTGTT
GGGGTCTTGGGTGAAAACGCCGGCCCGTTCACAGGCCAGCTGAATTTCGT
GAGCGGTGAGACCTTTGGACCGTAGGAACTGCTGCTTCTGGATAAGTGTC
GTGTGGCGCACCTTGGTGTTTTGTAGAAAACTGACTGCAGTGGTTATCAG
CGATTCTCGAGGCAATTGCTCATCTACGCCGGCCTCGACATCGTTCTGCA
CCGA
BO12319.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4289-PA | 843 | CG4289-RA | 55..840 | 804..19 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex14-RA | 1249 | CG4289-RA | 189..974 | 804..19 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20779676..20780103 | 446..19 | 2140 | 100 | Minus |
3L | 28110227 | 3L | 20779098..20779405 | 752..445 | 1525 | 99.7 | Minus |
3L | 28110227 | 3L | 20778987..20779047 | 804..744 | 290 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:33:33 has no hits.
BO12319.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:20 Download gff for
BO12319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4289-PA | 56..843 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:43 Download gff for
BO12319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4289-PA | 56..843 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:05:56 Download gff for
BO12319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex14-RA | 190..977 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:25 Download gff for
BO12319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex14-RA | 190..977 | 15..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:25 Download gff for
BO12319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20778988..20779043 | 748..803 | 100 | -> | Minus |
3L | 20779103..20779405 | 445..747 | 100 | -> | Minus |
3L | 20779678..20780106 | 15..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:05:56 Download gff for
BO12319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20772088..20772143 | 748..803 | 100 | -> | Minus |
arm_3L | 20772203..20772505 | 445..747 | 100 | -> | Minus |
arm_3L | 20772778..20773206 | 15..444 | 99 | | Minus |
BO12319.5prime Sequence
823 bp (806 high quality bases) assembled on 2006-04-20
> BO12319.5prime
GAAGTTATCAGTCGACATGTCCAGCAACAACACGGACACTGGGGACACCA
CCGTCATGGCGACGGCTACCTCGGTGCAGAACGATGTCGAGGCCGGCGTA
GATGAGCAATTGCCTCGAGAATCGCTGATAACCACTGCAGTCAGTTTTCT
ACAAAACACCAAGGTGCGCCACACGACACTTATCCAGAAGCAGCAGTTCC
TACGGTCCAAAGGTCTCACCGCTCACGAAATTCAGCTGGCCTGTGAACGG
GCCGGCGTTTTCACCCAAGACCCCAACAAGCCCAATCCGAATCCGAACAC
CGTCATTAGCATTGGATCCCAATTGCACGCGCTGCAGCCGCAGCCGACTG
TCTTGGGCCGGATCAGGGAAATCATCCATTCGGCAGCCCTGTTCAGCGGA
GTCGTCTACGCAGTCTACATCTTCTGGAAGCAATACATTGCGCCCTACCT
GTTCGGCAAGTCCAAGAAGAAGGCGGTCGATGAAGTCCTGGACGACATAG
ACAAGAAGGTAGAGACCCGCACCAACGACCTCAACAAGGAGATTTTGGCG
GTCAGGGATCTGATCACCACACAGCAAAGGGAACACGCCCAGCAGCTGAA
CCGCGAATTTAGTAACTTCCGTAGCGATCTGGATGCCATTAAGGGCCTGC
TTTTGAACCGAAAACAGTTCGCCGGCCCTGTGGCTCCGATCGCAGTGCCA
TCCATTCCCGCCTGGCAATTGGCCGGCTCACCGCATCACCATCACCGGCA
CAGCGGGTCGGACGACAACGAGAAGGGCGATGATGCTGGATCCGGGTCTG
GCTCGTCGGAGACAGAGGTGGTC
BO12319.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4289-PA | 843 | CG4289-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex14-RA | 1249 | CG4289-RA | 135..941 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20779676..20780070 | 429..823 | 1975 | 100 | Plus |
3L | 28110227 | 3L | 20779098..20779405 | 123..430 | 1525 | 99.7 | Plus |
3L | 28110227 | 3L | 20778933..20779047 | 17..131 | 560 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:03:37 has no hits.
BO12319.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:21 Download gff for
BO12319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4289-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:45 Download gff for
BO12319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4289-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:17:19 Download gff for
BO12319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex14-RA | 135..941 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:58 Download gff for
BO12319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex14-RA | 135..941 | 17..823 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:58 Download gff for
BO12319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20778933..20779043 | 17..127 | 100 | -> | Plus |
3L | 20779103..20779405 | 128..430 | 100 | -> | Plus |
3L | 20779678..20780070 | 431..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:17:19 Download gff for
BO12319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20772033..20772143 | 17..127 | 100 | -> | Plus |
arm_3L | 20772203..20772505 | 128..430 | 100 | -> | Plus |
arm_3L | 20772778..20773170 | 431..823 | 100 | | Plus |
BO12319.complete Sequence
874 bp assembled on 2006-10-11
GenBank Submission: FJ632403
> BO12319.complete
GAAGTTATCAGTCGACATGTCCAGCAACAACACGGACACTGGGGACACCA
CCGTCATGGCGACGGCTACCTCGGTGCAGAACGATGTCGAGGCCGGCGTA
GATGAGCAATTGCCTCGAGAATCGCTGATAACCACTGCAGTCAGTTTTCT
ACAAAACACCAAGGTGCGCCACACGACACTTATCCAGAAGCAGCAGTTCC
TACGGTCCAAAGGTCTCACCGCTCACGAAATTCAGCTGGCCTGTGAACGG
GCCGGCGTTTTCACCCAAGACCCCAACAAGCCCAATCCGAATCCGAACAC
CGTCATTAGCATTGGATCCCAATTGCACGCGCTGCAGCCGCAGCCGACTG
TCTTGGGCCGGATCAGGGAAATCATCCATTCGGCAGCCCTGTTCAGCGGA
GTCGTCTACGCAGTCTACATCTTCTGGAAGCAATACATTGCGCCCTACCT
GTTCGGCAAGTCCAAGAAGAAGGCGGTCGATGAAGTCCTGGACGACATAG
ACAAGAAGGTAGAGACCCGCACCAACGACCTCAACAAGGAGATTTTGGCG
GTCAGGGATCTGATCACCACACAGCAAAGGGAACACGCCCAGCAGCTGAA
CCGCGAATTTAGTAACTTCCGTAGCGATCTGGATGCCATTAAGGGCCTGC
TTTTGAACCGAAAACAGTTCGCCGGCCCTGTGGCTCCGATCGCAGTGCCA
TCCATTCCCGCCTGGCAATTGGCCGGCTCACCGCATCACCATCACCGGCA
CAGCGGGTCGGACGACAACGAGAAGGGCGATGATGCTGGATCCGGGTCTG
GCTCGTCGGAGACAGAGGTGGTCACCAAGAATAGTGACTCCAGCTTGGAG
ATCATGGCAAGCTTTCTAGACCAT
BO12319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex14-RA | 843 | CG4289-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex14-RA | 1249 | CG4289-RA | 135..974 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20779676..20780103 | 429..856 | 2140 | 100 | Plus |
3L | 28110227 | 3L | 20779098..20779405 | 123..430 | 1525 | 99.7 | Plus |
3L | 28110227 | 3L | 20778933..20779047 | 17..131 | 560 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:40:30 has no hits.
BO12319.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:46 Download gff for
BO12319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4289-RA | 1..843 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:52 Download gff for
BO12319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4289-RA | 139..981 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:26 Download gff for
BO12319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex14-RA | 135..974 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:46 Download gff for
BO12319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4289-RA | 139..981 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:26 Download gff for
BO12319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex14-RA | 135..974 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:26 Download gff for
BO12319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20778933..20779043 | 17..127 | 100 | -> | Plus |
3L | 20779103..20779405 | 128..430 | 100 | -> | Plus |
3L | 20779678..20780103 | 431..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:26 Download gff for
BO12319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20772203..20772505 | 128..430 | 100 | -> | Plus |
arm_3L | 20772033..20772143 | 17..127 | 100 | -> | Plus |
arm_3L | 20772778..20773203 | 431..858 | 99 | | Plus |
BO12319.pep Sequence
Translation from 16 to 874
> BO12319.pep
MSSNNTDTGDTTVMATATSVQNDVEAGVDEQLPRESLITTAVSFLQNTKV
RHTTLIQKQQFLRSKGLTAHEIQLACERAGVFTQDPNKPNPNPNTVISIG
SQLHALQPQPTVLGRIREIIHSAALFSGVVYAVYIFWKQYIAPYLFGKSK
KKAVDEVLDDIDKKVETRTNDLNKEILAVRDLITTQQREHAQQLNREFSN
FRSDLDAIKGLLLNRKQFAGPVAPIAVPSIPAWQLAGSPHHHHRHSGSDD
NEKGDDAGSGSGSSETEVVTKNSDSSLEIMASFLDH
BO12319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex14-PA | 280 | CG4289-PA | 1..280 | 1..280 | 1432 | 100 | Plus |