Clone BO12320 Report

Search the DGRC for BO12320

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG11555-RA
Protein status:BO12320.pep: validated full length
Sequenced Size:697

Clone Sequence Records

BO12320.3prime Sequence

695 bp (694 high quality bases) assembled on 2006-04-20

> BO12320.3prime
ATGGTCTAGAAAGCTTGCTTCATTATGTGGCCCTTTCTGAAACGGATTTC
TCCTATTTGGTCCCTTCTTTCGATAAGGATGTGCATTATCTCGCATTTTC
TGAAAGGGATGGCTACCCTTTGCTTCTTTCGCATTTGATGATTTCACATT
TCGACGTGTATGATTCGAACGTTCTAATTCGAACTTGTCCTTTGTCAGCT
GTCTATATTTCAAGTCCTTTAGGGCAGATTTAAGTGTTGCATTCTTTTTC
GTTAAATTGAAACCCAAAGTGAGTTGCTTTCGGAAAAAGTTCCGCTCCTT
AAAAGTGAAGTTCTCAACGTCCGTGGAGAGCTGTTGTTTTCTTTCCGTGG
AGGGCTTCTCATCGTTGAAGGGCTCCCATGTAGTATCCTGCGACCGGTTG
GCTTCTATGACATTTCGACGGTGGTTCTTCTGACGCTGCTGCATGAACTG
CCTTGCGTCCTCGCTGTCCACATCCTGGTGTCCCCGGTCCGAAGAATCCG
TAATTATGTCGTTCTTCACATGCTGCCAGGGCGTCGCAGTAGCTTGTGGA
ACGAGCGCTGGTTTCGGTTGGACATACTTCTTTGGCTTGAACTTGGTTTT
GCCCCAGTCCTTGGTGCGGCTCTGCAATTGACGTTCATGGCGATCATTAT
CTTCTGTTTTCTTCGGATTGGTAGAATTCATGTCGACTGATAACT

BO12320.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11555-PA 666 CG11555-RA 1..663 681..19 3315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11555-RB 859 CG11555-RB 151..813 681..19 3315 100 Minus
CG11555-RA 830 CG11555-RA 50..712 681..19 3315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 273986..274648 681..19 3315 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:54:00 has no hits.

BO12320.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:22 Download gff for BO12320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11555-PA 1..666 15..681 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:46 Download gff for BO12320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11555-PA 1..666 15..681 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:12 Download gff for BO12320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11555-RA 43..721 6..689 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:50 Download gff for BO12320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11555-RA 43..721 6..689 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:50 Download gff for BO12320.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 273979..274657 6..689 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:12 Download gff for BO12320.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 273979..274657 6..689 98   Minus

BO12320.5prime Sequence

695 bp (694 high quality bases) assembled on 2006-04-20

> BO12320.5prime
GAAGTTATCAGTCGACATGAATTCTACCAATCCGAAGAAAACAGAAGATA
ATGATCGCCATGAACGTCAATTGCAGAGCCGCACCAAGGACTGGGGCAAA
ACCAAGTTCAAGCCAAAGAAGTATGTCCAACCGAAACCAGCGCTCGTTCC
ACAAGCTACTGCGACGCCCTGGCAGCATGTGAAGAACGACATAATTACGG
ATTCTTCGGACCGGGGACACCAGGATGTGGACAGCGAGGACGCAAGGCAG
TTCATGCAGCAGCGTCAGAAGAACCACCGTCGAAATGTCATAGAAGCCAA
CCGGTCGCAGGATACTACATGGGAGCCCTTCAACGATGAGAAGCCCTCCA
CGGAAAGAAAACAACAGCTCTCCACGGACGTTGAGAACTTCACTTTTAAG
GAGCGGAACTTTTTCCGAAAGCAACTCACTTTGGGTTTCAATTTAACGAA
AAAGAATGCAACACTTAAATCTGCCCTAAAGGACTTGAAATATAGACAGC
TGACAAAGGACAAGTTCGAATTAGAACGTTCGAATCATACACGTCGAAAT
GTGAAATCATCAAATGCGAAAGAAGCAAAGGGTAGCCATCCCTTTCAGAA
AATGCGAGATAATGCACATCCTTATCGAAAGAAGGGACCAAATAGGAGAA
ATCCGTTTCAGAAAGGGCCACATAATGAAGCAAGCTTTCTAGACC

BO12320.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11555-PA 666 CG11555-RA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11555-RB 859 CG11555-RB 151..813 17..679 3315 100 Plus
CG11555-RA 830 CG11555-RA 50..712 17..679 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 273986..274648 17..679 3315 100 Plus
Blast to na_te.dros performed on 2015-02-10 00:36:07 has no hits.

BO12320.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:23 Download gff for BO12320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11555-PA 1..666 17..683 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:47 Download gff for BO12320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11555-PA 1..666 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:35 Download gff for BO12320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11555-RA 43..721 9..692 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:05:10 Download gff for BO12320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11555-RA 43..721 9..692 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:05:10 Download gff for BO12320.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 273979..274657 9..692 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:35 Download gff for BO12320.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 273979..274657 9..692 98   Plus

BO12320.complete Sequence

697 bp assembled on 2006-10-11

GenBank Submission: FJ632404

> BO12320.complete
GAAGTTATCAGTCGACATGAATTCTACCAATCCGAAGAAAACAGAAGATA
ATGATCGCCATGAACGTCAATTGCAGAGCCGCACCAAGGACTGGGGCAAA
ACCAAGTTCAAGCCAAAGAAGTATGTCCAACCGAAACCAGCGCTCGTTCC
ACAAGCTACTGCGACGCCCTGGCAGCATGTGAAGAACGACATAATTACGG
ATTCTTCGGACCGGGGACACCAGGATGTGGACAGCGAGGACGCAAGGCAG
TTCATGCAGCAGCGTCAGAAGAACCACCGTCGAAATGTCATAGAAGCCAA
CCGGTCGCAGGATACTACATGGGAGCCCTTCAACGATGAGAAGCCCTCCA
CGGAAAGAAAACAACAGCTCTCCACGGACGTTGAGAACTTCACTTTTAAG
GAGCGGAACTTTTTCCGAAAGCAACTCACTTTGGGTTTCAATTTAACGAA
AAAGAATGCAACACTTAAATCTGCCCTAAAGGACTTGAAATATAGACAGC
TGACAAAGGACAAGTTCGAATTAGAACGTTCGAATCATACACGTCGAAAT
GTGAAATCATCAAATGCGAAAGAAGCAAAGGGTAGCCATCCCTTTCAGAA
AATGCGAGATAATGCACATCCTTATCGAAAGAAGGGACCAAATAGGAGAA
ATCCGTTTCAGAAAGGGCCACATAATGAAGCAAGCTTTCTAGACCAT

BO12320.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11555-RB 666 CG11555-PB 1..663 17..679 3315 100 Plus
CG11555-RA 666 CG11555-PA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11555-RB 859 CG11555-RB 151..813 17..679 3315 100 Plus
CG11555-RA 830 CG11555-RA 50..712 17..679 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 273986..274648 17..679 3315 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:03:53 has no hits.

BO12320.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:54 Download gff for BO12320.complete
Subject Subject Range Query Range Percent Splice Strand
CG11555-RA 1..666 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:06 Download gff for BO12320.complete
Subject Subject Range Query Range Percent Splice Strand
CG11555-RA 25..703 9..692 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:10:32 Download gff for BO12320.complete
Subject Subject Range Query Range Percent Splice Strand
CG11555-RA 50..712 17..681 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:54 Download gff for BO12320.complete
Subject Subject Range Query Range Percent Splice Strand
CG11555-RA 25..703 9..692 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:56 Download gff for BO12320.complete
Subject Subject Range Query Range Percent Splice Strand
CG11555-RA 50..712 17..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:56 Download gff for BO12320.complete
Subject Subject Range Query Range Percent Splice Strand
2L 273986..274648 17..681 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:10:32 Download gff for BO12320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 273986..274648 17..681 99   Plus

BO12320.pep Sequence

Translation from 16 to 697

> BO12320.pep
MNSTNPKKTEDNDRHERQLQSRTKDWGKTKFKPKKYVQPKPALVPQATAT
PWQHVKNDIITDSSDRGHQDVDSEDARQFMQQRQKNHRRNVIEANRSQDT
TWEPFNDEKPSTERKQQLSTDVENFTFKERNFFRKQLTLGFNLTKKNATL
KSALKDLKYRQLTKDKFELERSNHTRRNVKSSNAKEAKGSHPFQKMRDNA
HPYRKKGPNRRNPFQKGPHNEASFLDH

BO12320.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11555-PB 221 CG11555-PB 1..221 1..221 1186 100 Plus
CG11555-PA 221 CG11555-PA 1..221 1..221 1186 100 Plus