Clone Sequence Records
BO12320.3prime Sequence
695 bp (694 high quality bases) assembled on 2006-04-20
> BO12320.3prime
ATGGTCTAGAAAGCTTGCTTCATTATGTGGCCCTTTCTGAAACGGATTTC
TCCTATTTGGTCCCTTCTTTCGATAAGGATGTGCATTATCTCGCATTTTC
TGAAAGGGATGGCTACCCTTTGCTTCTTTCGCATTTGATGATTTCACATT
TCGACGTGTATGATTCGAACGTTCTAATTCGAACTTGTCCTTTGTCAGCT
GTCTATATTTCAAGTCCTTTAGGGCAGATTTAAGTGTTGCATTCTTTTTC
GTTAAATTGAAACCCAAAGTGAGTTGCTTTCGGAAAAAGTTCCGCTCCTT
AAAAGTGAAGTTCTCAACGTCCGTGGAGAGCTGTTGTTTTCTTTCCGTGG
AGGGCTTCTCATCGTTGAAGGGCTCCCATGTAGTATCCTGCGACCGGTTG
GCTTCTATGACATTTCGACGGTGGTTCTTCTGACGCTGCTGCATGAACTG
CCTTGCGTCCTCGCTGTCCACATCCTGGTGTCCCCGGTCCGAAGAATCCG
TAATTATGTCGTTCTTCACATGCTGCCAGGGCGTCGCAGTAGCTTGTGGA
ACGAGCGCTGGTTTCGGTTGGACATACTTCTTTGGCTTGAACTTGGTTTT
GCCCCAGTCCTTGGTGCGGCTCTGCAATTGACGTTCATGGCGATCATTAT
CTTCTGTTTTCTTCGGATTGGTAGAATTCATGTCGACTGATAACT
BO12320.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11555-PA | 666 | CG11555-RA | 1..663 | 681..19 | 3315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11555-RB | 859 | CG11555-RB | 151..813 | 681..19 | 3315 | 100 | Minus |
CG11555-RA | 830 | CG11555-RA | 50..712 | 681..19 | 3315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 273986..274648 | 681..19 | 3315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:54:00 has no hits.
BO12320.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:22 Download gff for
BO12320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-PA | 1..666 | 15..681 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:46 Download gff for
BO12320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-PA | 1..666 | 15..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:12 Download gff for
BO12320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-RA | 43..721 | 6..689 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:50 Download gff for
BO12320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-RA | 43..721 | 6..689 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:50 Download gff for
BO12320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 273979..274657 | 6..689 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:12 Download gff for
BO12320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 273979..274657 | 6..689 | 98 | | Minus |
BO12320.5prime Sequence
695 bp (694 high quality bases) assembled on 2006-04-20
> BO12320.5prime
GAAGTTATCAGTCGACATGAATTCTACCAATCCGAAGAAAACAGAAGATA
ATGATCGCCATGAACGTCAATTGCAGAGCCGCACCAAGGACTGGGGCAAA
ACCAAGTTCAAGCCAAAGAAGTATGTCCAACCGAAACCAGCGCTCGTTCC
ACAAGCTACTGCGACGCCCTGGCAGCATGTGAAGAACGACATAATTACGG
ATTCTTCGGACCGGGGACACCAGGATGTGGACAGCGAGGACGCAAGGCAG
TTCATGCAGCAGCGTCAGAAGAACCACCGTCGAAATGTCATAGAAGCCAA
CCGGTCGCAGGATACTACATGGGAGCCCTTCAACGATGAGAAGCCCTCCA
CGGAAAGAAAACAACAGCTCTCCACGGACGTTGAGAACTTCACTTTTAAG
GAGCGGAACTTTTTCCGAAAGCAACTCACTTTGGGTTTCAATTTAACGAA
AAAGAATGCAACACTTAAATCTGCCCTAAAGGACTTGAAATATAGACAGC
TGACAAAGGACAAGTTCGAATTAGAACGTTCGAATCATACACGTCGAAAT
GTGAAATCATCAAATGCGAAAGAAGCAAAGGGTAGCCATCCCTTTCAGAA
AATGCGAGATAATGCACATCCTTATCGAAAGAAGGGACCAAATAGGAGAA
ATCCGTTTCAGAAAGGGCCACATAATGAAGCAAGCTTTCTAGACC
BO12320.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11555-PA | 666 | CG11555-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11555-RB | 859 | CG11555-RB | 151..813 | 17..679 | 3315 | 100 | Plus |
CG11555-RA | 830 | CG11555-RA | 50..712 | 17..679 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 273986..274648 | 17..679 | 3315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:36:07 has no hits.
BO12320.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:23 Download gff for
BO12320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-PA | 1..666 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:47 Download gff for
BO12320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-PA | 1..666 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:35 Download gff for
BO12320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-RA | 43..721 | 9..692 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:05:10 Download gff for
BO12320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-RA | 43..721 | 9..692 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:05:10 Download gff for
BO12320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 273979..274657 | 9..692 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:35 Download gff for
BO12320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 273979..274657 | 9..692 | 98 | | Plus |
BO12320.complete Sequence
697 bp assembled on 2006-10-11
GenBank Submission: FJ632404
> BO12320.complete
GAAGTTATCAGTCGACATGAATTCTACCAATCCGAAGAAAACAGAAGATA
ATGATCGCCATGAACGTCAATTGCAGAGCCGCACCAAGGACTGGGGCAAA
ACCAAGTTCAAGCCAAAGAAGTATGTCCAACCGAAACCAGCGCTCGTTCC
ACAAGCTACTGCGACGCCCTGGCAGCATGTGAAGAACGACATAATTACGG
ATTCTTCGGACCGGGGACACCAGGATGTGGACAGCGAGGACGCAAGGCAG
TTCATGCAGCAGCGTCAGAAGAACCACCGTCGAAATGTCATAGAAGCCAA
CCGGTCGCAGGATACTACATGGGAGCCCTTCAACGATGAGAAGCCCTCCA
CGGAAAGAAAACAACAGCTCTCCACGGACGTTGAGAACTTCACTTTTAAG
GAGCGGAACTTTTTCCGAAAGCAACTCACTTTGGGTTTCAATTTAACGAA
AAAGAATGCAACACTTAAATCTGCCCTAAAGGACTTGAAATATAGACAGC
TGACAAAGGACAAGTTCGAATTAGAACGTTCGAATCATACACGTCGAAAT
GTGAAATCATCAAATGCGAAAGAAGCAAAGGGTAGCCATCCCTTTCAGAA
AATGCGAGATAATGCACATCCTTATCGAAAGAAGGGACCAAATAGGAGAA
ATCCGTTTCAGAAAGGGCCACATAATGAAGCAAGCTTTCTAGACCAT
BO12320.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11555-RB | 666 | CG11555-PB | 1..663 | 17..679 | 3315 | 100 | Plus |
CG11555-RA | 666 | CG11555-PA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11555-RB | 859 | CG11555-RB | 151..813 | 17..679 | 3315 | 100 | Plus |
CG11555-RA | 830 | CG11555-RA | 50..712 | 17..679 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 273986..274648 | 17..679 | 3315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:03:53 has no hits.
BO12320.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:54 Download gff for
BO12320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-RA | 1..666 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:06 Download gff for
BO12320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-RA | 25..703 | 9..692 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:10:32 Download gff for
BO12320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-RA | 50..712 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:54 Download gff for
BO12320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-RA | 25..703 | 9..692 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:56 Download gff for
BO12320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11555-RA | 50..712 | 17..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:56 Download gff for
BO12320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 273986..274648 | 17..681 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:10:32 Download gff for
BO12320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 273986..274648 | 17..681 | 99 | | Plus |
BO12320.pep Sequence
Translation from 16 to 697
> BO12320.pep
MNSTNPKKTEDNDRHERQLQSRTKDWGKTKFKPKKYVQPKPALVPQATAT
PWQHVKNDIITDSSDRGHQDVDSEDARQFMQQRQKNHRRNVIEANRSQDT
TWEPFNDEKPSTERKQQLSTDVENFTFKERNFFRKQLTLGFNLTKKNATL
KSALKDLKYRQLTKDKFELERSNHTRRNVKSSNAKEAKGSHPFQKMRDNA
HPYRKKGPNRRNPFQKGPHNEASFLDH
BO12320.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11555-PB | 221 | CG11555-PB | 1..221 | 1..221 | 1186 | 100 | Plus |
CG11555-PA | 221 | CG11555-PA | 1..221 | 1..221 | 1186 | 100 | Plus |