Clone BO12322 Report

Search the DGRC for BO12322

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG9577-RA
Protein status:BO12322.pep: validated full length
Sequenced Size:970

Clone Sequence Records

BO12322.3prime Sequence

946 bp (840 high quality bases) assembled on 2006-04-20

> BO12322.3prime
ATGGTCTAGAAAGCTTGCCAGCTTGGCGAACACTGGCTTATCGTCCTTCG
TCAACTGGGCGGCCACAGCCTGGGCGAAGTCCTCCGACAGCAGGTTGAGC
TTGTTCAGCAGGAGAATGTGATCCAAGCCCTCTTGATTGGTGTGCTCCAG
GGAGTACACGAGGCTCTCCTTGGTTGTCTTTACGGCGACGGGACTCTTGC
TAGCGATGAGCTCGGCCACGGCCAGGGCTCCGGTCAGCAGGGAATCCTTG
TCTGGGAAGAGGCGACTCACCAGGCCCGAGGAGTGGGCCTCGGCGGCCTC
GAATTTGCGCCCAGTGAAGCACAGCTCGCGGGCGAGGGACTGACTGCCCA
CTGCCTTGGGCAGACGCTGCAGGGTGCCCACGTCGGCGGCCATGCCGATG
TCCACCTCCTTGACCTGGAAAAAGGCGTCCTCGGTGCAGTAGCGAATGTC
GGCGGCGGTAATCAGGTCCACGCCGGCGCCGATGCACGCCTTGTGCACCG
CCGTGATGACCGGCTTGGGGCAGTGCTCCAGGCTGCTGATTGAGTCCTGG
TACACCTTGATCATTCGCTCCATGGAGACGCCCTTGCGGGCGTAGTCATC
GGTCTCGGCCAGCGTTTGGCCCACGTTTATCATGTCGTTGAGGTCGATGC
CGGCGGTGAAGTGCTTTCCGGAGGCGGACAAAACGATAGCCCGGCAGTCG
GGATTAGTGGCCAGTCCGTCGAAGCACTCCTTGATCTCCAGCCACATCTG
CTTGCTTATGGCGTTGAACTTGCTGGGCCGATGGAGCTCCACATGAAAGA
CGAACGGCTTGGGCGAACTGACGGCCAGCGTCTTGAAAGAGCCGGTGGGT
CCGGATTCCGGGAGGGCGGAAAGGGTTCTCTGCATCTTAAGGGATCCGAT
GGCCGTGGGCTTGGGCGTTAGTTTCATCAGAGTGTTCAGGCGGGAA

BO12322.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9577-PA 939 CG9577-RA 10..936 945..19 4610 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9577-RA 1131 CG9577-RA 102..1028 945..19 4620 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20167191..20167815 739..115 3125 100 Minus
X 23542271 X 20166956..20167120 903..739 810 99.4 Minus
X 23542271 X 20167882..20167977 114..19 480 100 Minus
X 23542271 X 20166774..20166816 945..903 215 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:48:50 has no hits.

BO12322.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:26 Download gff for BO12322.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9577-PA 11..939 16..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:51 Download gff for BO12322.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9577-PA 11..939 16..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:48:59 Download gff for BO12322.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 100..1028 19..946 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:15 Download gff for BO12322.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 100..1028 19..946 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:15 Download gff for BO12322.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20166772..20166816 903..946 97 -> Minus
X 20166957..20167119 740..902 99 -> Minus
X 20167191..20167815 115..739 100 -> Minus
X 20167882..20167977 19..114 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:48:59 Download gff for BO12322.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20060805..20060849 903..946 97 -> Minus
arm_X 20060990..20061152 740..902 99 -> Minus
arm_X 20061224..20061848 115..739 100 -> Minus
arm_X 20061915..20062010 19..114 100   Minus

BO12322.5prime Sequence

926 bp (787 high quality bases) assembled on 2006-04-20

> BO12322.5prime
GAAGTTATCAGTCGACATGTCGCTCTCCCGCCTGAACACTCTGATGAAAC
TAACGCCCAAGCCCACGGCCATCGGATCCCTTAAGATGCAGAGAAACCTT
TCCGCCCTCCCGGAATCCGGACCCACCGGCTCTTTCAAGACGCTGGCCGT
CAGTTCGCCCAAGCCGTTCGTCTTTCATGTGGAGCTCCATCGGCCCAGCA
AGTTCAACGCCATAAGCAAGCAGATGTGGCTGGAGATCAAGGAGTGCTTC
GACGGACTGGCCACTAATCCCGACTGCCGGGCTATCGTTTTGTCCGCCTC
CGGAAAGCACTTCACCGCCGGCATCGACCTCAACGACATGATAAACGTGG
GCCAAACGCTGGCCGAGACCGATGACTACGCCCGCAAGGGCGTCTCCATG
GAGCGAATGATCAAGGTGTACCAGGACTCAATCAGCAGCCTGGAGCACTG
CCCCAAGCCGGTCATCACGGCGGTGCACAAGGCGTGCATCGGCGCCGGCG
TGGACCTGATTACCGCCGCCGACATTCGCTACTGCACCGAGGACGCCTTT
TTCCAGGTCAAGGAGGTGGACATCGGCATGGCCGCCGACGTGGGCACCCT
GCAGCGTCTGCCCAAGGCAGTGGGCAGTCAGTCCCTCGCCCGCGAGCTGT
GCTTCACTGGGCGCAAATTCGAGGCCGCCGAGGCCCACTCCTCGGGCCTG
GTGAGTCGCCTCTTCCCAGACAAGGATTCCCTGCTGACCGGAGCCCTGGC
CGTGGCCGAGCTCATCGCTAGCAAGAGTCCCGTCGCCGTAAAGACAACCA
AGGAGAGCCTCGTGTACTCCCTGGAGCACACCAATCAAGAGGGCTTGGAT
CACATTCTCCTGCTGAACAAGCTCAACCTGCTGTCGGAGGACTTCGCCCA
GGCTGTGGCCGCCCAGTTGACGAAGG

BO12322.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9577-PA 939 CG9577-RA 1..910 17..926 4550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9577-RA 1131 CG9577-RA 93..1002 17..926 4550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20167191..20167815 232..856 3125 100 Plus
X 23542271 X 20166956..20167120 68..232 825 100 Plus
X 23542271 X 20167882..20167951 857..926 350 100 Plus
X 23542271 X 20166765..20166816 17..68 260 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:20:46 has no hits.

BO12322.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:27 Download gff for BO12322.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9577-PA 1..910 17..926 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:53 Download gff for BO12322.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9577-PA 1..910 17..926 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:46:19 Download gff for BO12322.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 86..1002 11..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:57 Download gff for BO12322.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 86..1002 11..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:57 Download gff for BO12322.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20167882..20167951 857..926 100   Plus
X 20166758..20166816 11..68 93 -> Plus
X 20166957..20167119 69..231 100 -> Plus
X 20167191..20167815 232..856 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:46:19 Download gff for BO12322.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20060791..20060849 11..68 93 -> Plus
arm_X 20060990..20061152 69..231 100 -> Plus
arm_X 20061224..20061848 232..856 100 -> Plus
arm_X 20061915..20061984 857..926 100   Plus

BO12322.complete Sequence

970 bp assembled on 2006-10-11

GenBank Submission: FJ632405

> BO12322.complete
GAAGTTATCAGTCGACATGTCGCTCTCCCGCCTGAACACTCTGATGAAAC
TAACGCCCAAGCCCACGGCCATCGGATCCCTTAAGATGCAGAGAAACCTT
TCCGCCCTCCCGGAATCCGGACCCACCGGCTCTTTCAAGACGCTGGCCGT
CAGTTCGCCCAAGCCGTTCGTCTTTCATGTGGAGCTCCATCGGCCCAGCA
AGTTCAACGCCATAAGCAAGCAGATGTGGCTGGAGATCAAGGAGTGCTTC
GACGGACTGGCCACTAATCCCGACTGCCGGGCTATCGTTTTGTCCGCCTC
CGGAAAGCACTTCACCGCCGGCATCGACCTCAACGACATGATAAACGTGG
GCCAAACGCTGGCCGAGACCGATGACTACGCCCGCAAGGGCGTCTCCATG
GAGCGAATGATCAAGGTGTACCAGGACTCAATCAGCAGCCTGGAGCACTG
CCCCAAGCCGGTCATCACGGCGGTGCACAAGGCGTGCATCGGCGCCGGCG
TGGACCTGATTACCGCCGCCGACATTCGCTACTGCACCGAGGACGCCTTT
TTCCAGGTCAAGGAGGTGGACATCGGCATGGCCGCCGACGTGGGCACCCT
GCAGCGTCTGCCCAAGGCAGTGGGCAGTCAGTCCCTCGCCCGCGAGCTGT
GCTTCACTGGGCGCAAATTCGAGGCCGCCGAGGCCCACTCCTCGGGCCTG
GTGAGTCGCCTCTTCCCAGACAAGGATTCCCTGCTGACCGGAGCCCTGGC
CGTGGCCGAGCTCATCGCTAGCAAGAGTCCCGTCGCCGTAAAGACAACCA
AGGAGAGCCTCGTGTACTCCCTGGAGCACACCAATCAAGAGGGCTTGGAT
CACATTCTCCTGCTGAACAAGCTCAACCTGCTGTCGGAGGACTTCGCCCA
GGCTGTGGCCGCCCAGTTGACGAAGGACGATAAGCCAGTGTTCGCCAAGC
TGGCAAGCTTTCTAGACCAT

BO12322.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9577-RA 939 CG9577-PA 1..936 17..952 4680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9577-RA 1131 CG9577-RA 93..1028 17..952 4680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20167191..20167815 232..856 3125 100 Plus
X 23542271 X 20166956..20167120 68..232 825 100 Plus
X 23542271 X 20167882..20167977 857..952 480 100 Plus
X 23542271 X 20166765..20166816 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:57:19 has no hits.

BO12322.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:27 Download gff for BO12322.complete
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 1..939 17..955 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:56 Download gff for BO12322.complete
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 84..1026 11..952 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:42 Download gff for BO12322.complete
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 93..1028 17..954 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:28 Download gff for BO12322.complete
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 84..1026 11..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:58 Download gff for BO12322.complete
Subject Subject Range Query Range Percent Splice Strand
CG9577-RA 93..1028 17..954 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:58 Download gff for BO12322.complete
Subject Subject Range Query Range Percent Splice Strand
X 20166765..20166816 17..68 100 -> Plus
X 20166957..20167119 69..231 100 -> Plus
X 20167191..20167815 232..856 100 -> Plus
X 20167882..20167977 857..954 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:42 Download gff for BO12322.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20060798..20060849 17..68 100 -> Plus
arm_X 20060990..20061152 69..231 100 -> Plus
arm_X 20061224..20061848 232..856 100 -> Plus
arm_X 20061915..20062010 857..954 97   Plus

BO12322.pep Sequence

Translation from 16 to 970

> BO12322.pep
MSLSRLNTLMKLTPKPTAIGSLKMQRNLSALPESGPTGSFKTLAVSSPKP
FVFHVELHRPSKFNAISKQMWLEIKECFDGLATNPDCRAIVLSASGKHFT
AGIDLNDMINVGQTLAETDDYARKGVSMERMIKVYQDSISSLEHCPKPVI
TAVHKACIGAGVDLITAADIRYCTEDAFFQVKEVDIGMAADVGTLQRLPK
AVGSQSLARELCFTGRKFEAAEAHSSGLVSRLFPDKDSLLTGALAVAELI
ASKSPVAVKTTKESLVYSLEHTNQEGLDHILLLNKLNLLSEDFAQAVAAQ
LTKDDKPVFAKLASFLDH

BO12322.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9577-PA 312 CG9577-PA 1..312 1..312 1574 100 Plus
CG6543-PA 295 CG6543-PA 55..261 55..277 240 31.4 Plus
CG6543-PB 295 CG6543-PB 55..261 55..277 240 31.4 Plus
CG8778-PA 299 CG8778-PA 3..250 1..262 222 28.3 Plus
CG13890-PA 262 CG13890-PA 21..187 56..233 152 24.2 Plus