Clone Sequence Records
BO12322.3prime Sequence
946 bp (840 high quality bases) assembled on 2006-04-20
> BO12322.3prime
ATGGTCTAGAAAGCTTGCCAGCTTGGCGAACACTGGCTTATCGTCCTTCG
TCAACTGGGCGGCCACAGCCTGGGCGAAGTCCTCCGACAGCAGGTTGAGC
TTGTTCAGCAGGAGAATGTGATCCAAGCCCTCTTGATTGGTGTGCTCCAG
GGAGTACACGAGGCTCTCCTTGGTTGTCTTTACGGCGACGGGACTCTTGC
TAGCGATGAGCTCGGCCACGGCCAGGGCTCCGGTCAGCAGGGAATCCTTG
TCTGGGAAGAGGCGACTCACCAGGCCCGAGGAGTGGGCCTCGGCGGCCTC
GAATTTGCGCCCAGTGAAGCACAGCTCGCGGGCGAGGGACTGACTGCCCA
CTGCCTTGGGCAGACGCTGCAGGGTGCCCACGTCGGCGGCCATGCCGATG
TCCACCTCCTTGACCTGGAAAAAGGCGTCCTCGGTGCAGTAGCGAATGTC
GGCGGCGGTAATCAGGTCCACGCCGGCGCCGATGCACGCCTTGTGCACCG
CCGTGATGACCGGCTTGGGGCAGTGCTCCAGGCTGCTGATTGAGTCCTGG
TACACCTTGATCATTCGCTCCATGGAGACGCCCTTGCGGGCGTAGTCATC
GGTCTCGGCCAGCGTTTGGCCCACGTTTATCATGTCGTTGAGGTCGATGC
CGGCGGTGAAGTGCTTTCCGGAGGCGGACAAAACGATAGCCCGGCAGTCG
GGATTAGTGGCCAGTCCGTCGAAGCACTCCTTGATCTCCAGCCACATCTG
CTTGCTTATGGCGTTGAACTTGCTGGGCCGATGGAGCTCCACATGAAAGA
CGAACGGCTTGGGCGAACTGACGGCCAGCGTCTTGAAAGAGCCGGTGGGT
CCGGATTCCGGGAGGGCGGAAAGGGTTCTCTGCATCTTAAGGGATCCGAT
GGCCGTGGGCTTGGGCGTTAGTTTCATCAGAGTGTTCAGGCGGGAA
BO12322.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9577-PA | 939 | CG9577-RA | 10..936 | 945..19 | 4610 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9577-RA | 1131 | CG9577-RA | 102..1028 | 945..19 | 4620 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20167191..20167815 | 739..115 | 3125 | 100 | Minus |
X | 23542271 | X | 20166956..20167120 | 903..739 | 810 | 99.4 | Minus |
X | 23542271 | X | 20167882..20167977 | 114..19 | 480 | 100 | Minus |
X | 23542271 | X | 20166774..20166816 | 945..903 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:48:50 has no hits.
BO12322.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:26 Download gff for
BO12322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-PA | 11..939 | 16..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:51 Download gff for
BO12322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-PA | 11..939 | 16..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:48:59 Download gff for
BO12322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 100..1028 | 19..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:15 Download gff for
BO12322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 100..1028 | 19..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:15 Download gff for
BO12322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20166772..20166816 | 903..946 | 97 | -> | Minus |
X | 20166957..20167119 | 740..902 | 99 | -> | Minus |
X | 20167191..20167815 | 115..739 | 100 | -> | Minus |
X | 20167882..20167977 | 19..114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:48:59 Download gff for
BO12322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20060805..20060849 | 903..946 | 97 | -> | Minus |
arm_X | 20060990..20061152 | 740..902 | 99 | -> | Minus |
arm_X | 20061224..20061848 | 115..739 | 100 | -> | Minus |
arm_X | 20061915..20062010 | 19..114 | 100 | | Minus |
BO12322.5prime Sequence
926 bp (787 high quality bases) assembled on 2006-04-20
> BO12322.5prime
GAAGTTATCAGTCGACATGTCGCTCTCCCGCCTGAACACTCTGATGAAAC
TAACGCCCAAGCCCACGGCCATCGGATCCCTTAAGATGCAGAGAAACCTT
TCCGCCCTCCCGGAATCCGGACCCACCGGCTCTTTCAAGACGCTGGCCGT
CAGTTCGCCCAAGCCGTTCGTCTTTCATGTGGAGCTCCATCGGCCCAGCA
AGTTCAACGCCATAAGCAAGCAGATGTGGCTGGAGATCAAGGAGTGCTTC
GACGGACTGGCCACTAATCCCGACTGCCGGGCTATCGTTTTGTCCGCCTC
CGGAAAGCACTTCACCGCCGGCATCGACCTCAACGACATGATAAACGTGG
GCCAAACGCTGGCCGAGACCGATGACTACGCCCGCAAGGGCGTCTCCATG
GAGCGAATGATCAAGGTGTACCAGGACTCAATCAGCAGCCTGGAGCACTG
CCCCAAGCCGGTCATCACGGCGGTGCACAAGGCGTGCATCGGCGCCGGCG
TGGACCTGATTACCGCCGCCGACATTCGCTACTGCACCGAGGACGCCTTT
TTCCAGGTCAAGGAGGTGGACATCGGCATGGCCGCCGACGTGGGCACCCT
GCAGCGTCTGCCCAAGGCAGTGGGCAGTCAGTCCCTCGCCCGCGAGCTGT
GCTTCACTGGGCGCAAATTCGAGGCCGCCGAGGCCCACTCCTCGGGCCTG
GTGAGTCGCCTCTTCCCAGACAAGGATTCCCTGCTGACCGGAGCCCTGGC
CGTGGCCGAGCTCATCGCTAGCAAGAGTCCCGTCGCCGTAAAGACAACCA
AGGAGAGCCTCGTGTACTCCCTGGAGCACACCAATCAAGAGGGCTTGGAT
CACATTCTCCTGCTGAACAAGCTCAACCTGCTGTCGGAGGACTTCGCCCA
GGCTGTGGCCGCCCAGTTGACGAAGG
BO12322.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9577-PA | 939 | CG9577-RA | 1..910 | 17..926 | 4550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9577-RA | 1131 | CG9577-RA | 93..1002 | 17..926 | 4550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20167191..20167815 | 232..856 | 3125 | 100 | Plus |
X | 23542271 | X | 20166956..20167120 | 68..232 | 825 | 100 | Plus |
X | 23542271 | X | 20167882..20167951 | 857..926 | 350 | 100 | Plus |
X | 23542271 | X | 20166765..20166816 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:20:46 has no hits.
BO12322.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:27 Download gff for
BO12322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-PA | 1..910 | 17..926 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:53 Download gff for
BO12322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-PA | 1..910 | 17..926 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:46:19 Download gff for
BO12322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 86..1002 | 11..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:57 Download gff for
BO12322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 86..1002 | 11..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:57 Download gff for
BO12322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20167882..20167951 | 857..926 | 100 | | Plus |
X | 20166758..20166816 | 11..68 | 93 | -> | Plus |
X | 20166957..20167119 | 69..231 | 100 | -> | Plus |
X | 20167191..20167815 | 232..856 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:46:19 Download gff for
BO12322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20060791..20060849 | 11..68 | 93 | -> | Plus |
arm_X | 20060990..20061152 | 69..231 | 100 | -> | Plus |
arm_X | 20061224..20061848 | 232..856 | 100 | -> | Plus |
arm_X | 20061915..20061984 | 857..926 | 100 | | Plus |
BO12322.complete Sequence
970 bp assembled on 2006-10-11
GenBank Submission: FJ632405
> BO12322.complete
GAAGTTATCAGTCGACATGTCGCTCTCCCGCCTGAACACTCTGATGAAAC
TAACGCCCAAGCCCACGGCCATCGGATCCCTTAAGATGCAGAGAAACCTT
TCCGCCCTCCCGGAATCCGGACCCACCGGCTCTTTCAAGACGCTGGCCGT
CAGTTCGCCCAAGCCGTTCGTCTTTCATGTGGAGCTCCATCGGCCCAGCA
AGTTCAACGCCATAAGCAAGCAGATGTGGCTGGAGATCAAGGAGTGCTTC
GACGGACTGGCCACTAATCCCGACTGCCGGGCTATCGTTTTGTCCGCCTC
CGGAAAGCACTTCACCGCCGGCATCGACCTCAACGACATGATAAACGTGG
GCCAAACGCTGGCCGAGACCGATGACTACGCCCGCAAGGGCGTCTCCATG
GAGCGAATGATCAAGGTGTACCAGGACTCAATCAGCAGCCTGGAGCACTG
CCCCAAGCCGGTCATCACGGCGGTGCACAAGGCGTGCATCGGCGCCGGCG
TGGACCTGATTACCGCCGCCGACATTCGCTACTGCACCGAGGACGCCTTT
TTCCAGGTCAAGGAGGTGGACATCGGCATGGCCGCCGACGTGGGCACCCT
GCAGCGTCTGCCCAAGGCAGTGGGCAGTCAGTCCCTCGCCCGCGAGCTGT
GCTTCACTGGGCGCAAATTCGAGGCCGCCGAGGCCCACTCCTCGGGCCTG
GTGAGTCGCCTCTTCCCAGACAAGGATTCCCTGCTGACCGGAGCCCTGGC
CGTGGCCGAGCTCATCGCTAGCAAGAGTCCCGTCGCCGTAAAGACAACCA
AGGAGAGCCTCGTGTACTCCCTGGAGCACACCAATCAAGAGGGCTTGGAT
CACATTCTCCTGCTGAACAAGCTCAACCTGCTGTCGGAGGACTTCGCCCA
GGCTGTGGCCGCCCAGTTGACGAAGGACGATAAGCCAGTGTTCGCCAAGC
TGGCAAGCTTTCTAGACCAT
BO12322.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9577-RA | 939 | CG9577-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9577-RA | 1131 | CG9577-RA | 93..1028 | 17..952 | 4680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20167191..20167815 | 232..856 | 3125 | 100 | Plus |
X | 23542271 | X | 20166956..20167120 | 68..232 | 825 | 100 | Plus |
X | 23542271 | X | 20167882..20167977 | 857..952 | 480 | 100 | Plus |
X | 23542271 | X | 20166765..20166816 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:57:19 has no hits.
BO12322.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:27 Download gff for
BO12322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:56 Download gff for
BO12322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 84..1026 | 11..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:42 Download gff for
BO12322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 93..1028 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:28 Download gff for
BO12322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 84..1026 | 11..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:58 Download gff for
BO12322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9577-RA | 93..1028 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:58 Download gff for
BO12322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20166765..20166816 | 17..68 | 100 | -> | Plus |
X | 20166957..20167119 | 69..231 | 100 | -> | Plus |
X | 20167191..20167815 | 232..856 | 100 | -> | Plus |
X | 20167882..20167977 | 857..954 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:42 Download gff for
BO12322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20060798..20060849 | 17..68 | 100 | -> | Plus |
arm_X | 20060990..20061152 | 69..231 | 100 | -> | Plus |
arm_X | 20061224..20061848 | 232..856 | 100 | -> | Plus |
arm_X | 20061915..20062010 | 857..954 | 97 | | Plus |
BO12322.pep Sequence
Translation from 16 to 970
> BO12322.pep
MSLSRLNTLMKLTPKPTAIGSLKMQRNLSALPESGPTGSFKTLAVSSPKP
FVFHVELHRPSKFNAISKQMWLEIKECFDGLATNPDCRAIVLSASGKHFT
AGIDLNDMINVGQTLAETDDYARKGVSMERMIKVYQDSISSLEHCPKPVI
TAVHKACIGAGVDLITAADIRYCTEDAFFQVKEVDIGMAADVGTLQRLPK
AVGSQSLARELCFTGRKFEAAEAHSSGLVSRLFPDKDSLLTGALAVAELI
ASKSPVAVKTTKESLVYSLEHTNQEGLDHILLLNKLNLLSEDFAQAVAAQ
LTKDDKPVFAKLASFLDH
BO12322.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9577-PA | 312 | CG9577-PA | 1..312 | 1..312 | 1574 | 100 | Plus |
CG6543-PA | 295 | CG6543-PA | 55..261 | 55..277 | 240 | 31.4 | Plus |
CG6543-PB | 295 | CG6543-PB | 55..261 | 55..277 | 240 | 31.4 | Plus |
CG8778-PA | 299 | CG8778-PA | 3..250 | 1..262 | 222 | 28.3 | Plus |
CG13890-PA | 262 | CG13890-PA | 21..187 | 56..233 | 152 | 24.2 | Plus |