Clone Sequence Records
BO12328.3prime Sequence
404 bp (403 high quality bases) assembled on 2006-04-20
> BO12328.3prime
ATGGTCTAGAAAGCTTGCGGTGCAGCAATGGTGACCGTTCTTAACGTAGT
AATTGTGCATGGCAACAGTACCATTCTTGCTATAGCTTCCGCTACCATTG
TACTGCATGTTGGACATGGAGCTGCCAATTCCGGAGCCACCTCCCGGAAT
GGGTGCGTCGTCGGTGCTGGTGGAGGCGTCAAAGGCCTTAATGGGATTCT
GGATAATCTTGCAGGTGAATTGGCGATGGGGGCCACGCTCCTGCTTAGGT
TGTATGGGGAAGCAGCACCAAAGGATAAATGCTATAAATGCCACCAGGGT
GCCTACCAGCAGTATGAAGTCCTCGATGGTCGGCTCCTCGCCCAGCAGCA
CATGATTGATTAGATAGACAAAGTCATCAAAGGGTGTCATGTCGACTGAT
AACT
BO12328.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:41:57 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17163-RA | 1716 | CG17163-RA | 581..952 | 390..19 | 1860 | 100 | Minus |
CG17163-RB | 1451 | CG17163-RB | 207..575 | 390..19 | 1805 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23081635..23081861 | 19..245 | 1135 | 100 | Plus |
X | 23542271 | X | 23081916..23082003 | 244..331 | 440 | 100 | Plus |
X | 23542271 | X | 23082070..23082129 | 331..390 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:57:33 has no hits.
BO12328.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:10:12 Download gff for
BO12328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 569..955 | 15..404 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:51:00 Download gff for
BO12328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 569..955 | 15..404 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:00 Download gff for
BO12328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23081632..23081859 | 15..243 | 99 | <- | Plus |
X | 23081916..23082002 | 244..330 | 100 | <- | Plus |
X | 23082070..23082141 | 331..404 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:12 Download gff for
BO12328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 60734..60820 | 244..330 | 100 | <- | Plus |
XHet | 60888..60959 | 331..404 | 93 | | Plus |
XHet | 60450..60677 | 15..243 | 99 | <- | Plus |
BO12328.5prime Sequence
404 bp (403 high quality bases) assembled on 2006-04-20
> BO12328.5prime
GAAGTTATCAGTCGACATGACACCCTTTGATGACTTTGTCTATCTAATCA
ATCATGTGCTGCTGGGCGAGGAGCCGACCATCGAGGACTTCATACTGCTG
GTAGGCACCCTGGTGGCATTTATAGCATTTATCCTTTGGTGCTGCTTCCC
CATACAACCTAAGCAGGAGCGTGGCCCCCATCGCCAATTCACCTGCAAGA
TTATCCAGAATCCCATTAAGGCCTTTGACGCCTCCACCAGCACCGACGAC
GCACCCATTCCGGGAGGTGGCTCCGGAATTGGCAGCTCCATGTCCAACAT
GCAGTACAATGGTAGCGGAAGCTATAGCAAGAATGGTACTGTTGCCATGC
ACAATTACTACGTTAAGAACGGTCACCATTGCTGCACCGCAAGCTTTCTA
GACC
BO12328.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:41:58 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:29:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17163-RA | 1716 | CG17163-RA | 581..952 | 17..388 | 1860 | 100 | Plus |
CG17163-RB | 1451 | CG17163-RB | 207..575 | 17..388 | 1805 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23081635..23081861 | 388..162 | 1135 | 100 | Minus |
X | 23542271 | X | 23081916..23082003 | 163..76 | 440 | 100 | Minus |
X | 23542271 | X | 23082070..23082129 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:29:08 has no hits.
BO12328.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:22:20 Download gff for
BO12328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 568..955 | 2..392 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:56 Download gff for
BO12328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 568..955 | 2..392 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:56 Download gff for
BO12328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23081632..23081859 | 164..392 | 99 | <- | Minus |
X | 23081916..23082002 | 77..163 | 100 | <- | Minus |
X | 23082070..23082142 | 2..76 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:22:20 Download gff for
BO12328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 60450..60677 | 164..392 | 99 | <- | Minus |
XHet | 60734..60820 | 77..163 | 100 | <- | Minus |
XHet | 60888..60960 | 2..76 | 93 | | Minus |
BO12328.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ632406
> BO12328.complete
GAAGTTATCAGTCGACATGACACCCTTTGATGACTTTGTCTATCTAATCA
ATCATGTGCTGCTGGGCGAGGAGCCGACCATCGAGGACTTCATACTGCTG
GTAGGCACCCTGGTGGCATTTATAGCATTTATCCTTTGGTGCTGCTTCCC
CATACAACCTAAGCAGGAGCGTGGCCCCCATCGCCAATTCACCTGCAAGA
TTATCCAGAATCCCATTAAGGCCTTTGACGCCTCCACCAGCACCGACGAC
GCACCCATTCCGGGAGGTGGCTCCGGAATTGGCAGCTCCATGTCCAACAT
GCAGTACAATGGTAGCGGAAGCTATAGCAAGAATGGTACTGTTGCCATGC
ACAATTACTACGTTAAGAACGGTCACCATTGCTGCACCGCAAGCTTTCTA
GACCAT
BO12328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17163-RA | 375 | CG17163-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
CG17163-RB | 372 | CG17163-PB | 1..369 | 17..388 | 1780 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17163-RA | 1716 | CG17163-RA | 581..952 | 17..388 | 1860 | 100 | Plus |
CG17163-RB | 1451 | CG17163-RB | 207..575 | 17..388 | 1780 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23081635..23081861 | 388..162 | 1135 | 100 | Minus |
X | 23542271 | X | 23081916..23082003 | 163..76 | 440 | 100 | Minus |
X | 23542271 | X | 23082070..23082129 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:42:01 has no hits.
BO12328.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:15 Download gff for
BO12328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:18 Download gff for
BO12328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 567..954 | 2..392 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:01 Download gff for
BO12328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 581..952 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:15 Download gff for
BO12328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 567..954 | 2..392 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:34 Download gff for
BO12328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17163-RA | 581..952 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:34 Download gff for
BO12328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23081633..23081859 | 164..390 | 99 | <- | Minus |
X | 23081916..23082002 | 77..163 | 100 | <- | Minus |
X | 23082070..23082129 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:01 Download gff for
BO12328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 60451..60677 | 164..390 | 99 | <- | Minus |
XHet | 60734..60820 | 77..163 | 100 | <- | Minus |
XHet | 60888..60947 | 17..76 | 100 | | Minus |
BO12328.pep Sequence
Translation from 16 to 406
> BO12328.pep
MTPFDDFVYLINHVLLGEEPTIEDFILLVGTLVAFIAFILWCCFPIQPKQ
ERGPHRQFTCKIIQNPIKAFDASTSTDDAPIPGGGSGIGSSMSNMQYNGS
GSYSKNGTVAMHNYYVKNGHHCCTASFLDH
BO12328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17163-PA | 124 | CG17163-PA | 1..124 | 1..124 | 681 | 100 | Plus |
CG17163-PB | 123 | CG17163-PB | 1..123 | 1..124 | 664 | 99.2 | Plus |