Clone BO12328 Report

Search the DGRC for BO12328

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG17163-RA
Protein status:BO12328.pep:
Sequenced Size:406

Clone Sequence Records

BO12328.3prime Sequence

404 bp (403 high quality bases) assembled on 2006-04-20

> BO12328.3prime
ATGGTCTAGAAAGCTTGCGGTGCAGCAATGGTGACCGTTCTTAACGTAGT
AATTGTGCATGGCAACAGTACCATTCTTGCTATAGCTTCCGCTACCATTG
TACTGCATGTTGGACATGGAGCTGCCAATTCCGGAGCCACCTCCCGGAAT
GGGTGCGTCGTCGGTGCTGGTGGAGGCGTCAAAGGCCTTAATGGGATTCT
GGATAATCTTGCAGGTGAATTGGCGATGGGGGCCACGCTCCTGCTTAGGT
TGTATGGGGAAGCAGCACCAAAGGATAAATGCTATAAATGCCACCAGGGT
GCCTACCAGCAGTATGAAGTCCTCGATGGTCGGCTCCTCGCCCAGCAGCA
CATGATTGATTAGATAGACAAAGTCATCAAAGGGTGTCATGTCGACTGAT
AACT

BO12328.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:41:57 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-RA 1716 CG17163-RA 581..952 390..19 1860 100 Minus
CG17163-RB 1451 CG17163-RB 207..575 390..19 1805 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23081635..23081861 19..245 1135 100 Plus
X 23542271 X 23081916..23082003 244..331 440 100 Plus
X 23542271 X 23082070..23082129 331..390 300 100 Plus
Blast to na_te.dros performed on 2015-02-01 04:57:33 has no hits.

BO12328.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:10:12 Download gff for BO12328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 569..955 15..404 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:51:00 Download gff for BO12328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 569..955 15..404 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:00 Download gff for BO12328.3prime
Subject Subject Range Query Range Percent Splice Strand
X 23081632..23081859 15..243 99 <- Plus
X 23081916..23082002 244..330 100 <- Plus
X 23082070..23082141 331..404 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:12 Download gff for BO12328.3prime
Subject Subject Range Query Range Percent Splice Strand
XHet 60734..60820 244..330 100 <- Plus
XHet 60888..60959 331..404 93   Plus
XHet 60450..60677 15..243 99 <- Plus

BO12328.5prime Sequence

404 bp (403 high quality bases) assembled on 2006-04-20

> BO12328.5prime
GAAGTTATCAGTCGACATGACACCCTTTGATGACTTTGTCTATCTAATCA
ATCATGTGCTGCTGGGCGAGGAGCCGACCATCGAGGACTTCATACTGCTG
GTAGGCACCCTGGTGGCATTTATAGCATTTATCCTTTGGTGCTGCTTCCC
CATACAACCTAAGCAGGAGCGTGGCCCCCATCGCCAATTCACCTGCAAGA
TTATCCAGAATCCCATTAAGGCCTTTGACGCCTCCACCAGCACCGACGAC
GCACCCATTCCGGGAGGTGGCTCCGGAATTGGCAGCTCCATGTCCAACAT
GCAGTACAATGGTAGCGGAAGCTATAGCAAGAATGGTACTGTTGCCATGC
ACAATTACTACGTTAAGAACGGTCACCATTGCTGCACCGCAAGCTTTCTA
GACC

BO12328.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:41:58 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-RA 1716 CG17163-RA 581..952 17..388 1860 100 Plus
CG17163-RB 1451 CG17163-RB 207..575 17..388 1805 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23081635..23081861 388..162 1135 100 Minus
X 23542271 X 23081916..23082003 163..76 440 100 Minus
X 23542271 X 23082070..23082129 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:29:08 has no hits.

BO12328.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:22:20 Download gff for BO12328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 568..955 2..392 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:56 Download gff for BO12328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 568..955 2..392 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:56 Download gff for BO12328.5prime
Subject Subject Range Query Range Percent Splice Strand
X 23081632..23081859 164..392 99 <- Minus
X 23081916..23082002 77..163 100 <- Minus
X 23082070..23082142 2..76 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:22:20 Download gff for BO12328.5prime
Subject Subject Range Query Range Percent Splice Strand
XHet 60450..60677 164..392 99 <- Minus
XHet 60734..60820 77..163 100 <- Minus
XHet 60888..60960 2..76 93   Minus

BO12328.complete Sequence

406 bp assembled on 2006-10-11

GenBank Submission: FJ632406

> BO12328.complete
GAAGTTATCAGTCGACATGACACCCTTTGATGACTTTGTCTATCTAATCA
ATCATGTGCTGCTGGGCGAGGAGCCGACCATCGAGGACTTCATACTGCTG
GTAGGCACCCTGGTGGCATTTATAGCATTTATCCTTTGGTGCTGCTTCCC
CATACAACCTAAGCAGGAGCGTGGCCCCCATCGCCAATTCACCTGCAAGA
TTATCCAGAATCCCATTAAGGCCTTTGACGCCTCCACCAGCACCGACGAC
GCACCCATTCCGGGAGGTGGCTCCGGAATTGGCAGCTCCATGTCCAACAT
GCAGTACAATGGTAGCGGAAGCTATAGCAAGAATGGTACTGTTGCCATGC
ACAATTACTACGTTAAGAACGGTCACCATTGCTGCACCGCAAGCTTTCTA
GACCAT

BO12328.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-RA 375 CG17163-PA 1..372 17..388 1860 100 Plus
CG17163-RB 372 CG17163-PB 1..369 17..388 1780 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-RA 1716 CG17163-RA 581..952 17..388 1860 100 Plus
CG17163-RB 1451 CG17163-RB 207..575 17..388 1780 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23081635..23081861 388..162 1135 100 Minus
X 23542271 X 23081916..23082003 163..76 440 100 Minus
X 23542271 X 23082070..23082129 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:42:01 has no hits.

BO12328.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:15 Download gff for BO12328.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 1..375 17..392 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:18 Download gff for BO12328.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 567..954 2..392 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:01 Download gff for BO12328.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 581..952 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:15 Download gff for BO12328.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 567..954 2..392 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:34 Download gff for BO12328.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 581..952 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:34 Download gff for BO12328.complete
Subject Subject Range Query Range Percent Splice Strand
X 23081633..23081859 164..390 99 <- Minus
X 23081916..23082002 77..163 100 <- Minus
X 23082070..23082129 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:01 Download gff for BO12328.complete
Subject Subject Range Query Range Percent Splice Strand
XHet 60451..60677 164..390 99 <- Minus
XHet 60734..60820 77..163 100 <- Minus
XHet 60888..60947 17..76 100   Minus

BO12328.pep Sequence

Translation from 16 to 406

> BO12328.pep
MTPFDDFVYLINHVLLGEEPTIEDFILLVGTLVAFIAFILWCCFPIQPKQ
ERGPHRQFTCKIIQNPIKAFDASTSTDDAPIPGGGSGIGSSMSNMQYNGS
GSYSKNGTVAMHNYYVKNGHHCCTASFLDH

BO12328.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-PA 124 CG17163-PA 1..124 1..124 681 100 Plus
CG17163-PB 123 CG17163-PB 1..123 1..124 664 99.2 Plus