Clone BO12329 Report

Search the DGRC for BO12329

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG8160-RA
Protein status:BO12329.pep: validated full length
Sequenced Size:670

Clone Sequence Records

BO12329.3prime Sequence

668 bp (667 high quality bases) assembled on 2006-04-20

> BO12329.3prime
ATGGTCTAGAAAGCTTGCGTAACGTCCATGATGTCCATGATGCTTGTGAT
GCTCGTGGTTACAGTTCTCGTGACCAATTCCGCCGGAGAATTCTCCCTGT
ACAAGTTGGGGGCCTGCTCCGAGCTCTCCTGCGGCATATAACTGGCCCGA
TTGGGGAGCTGGTCTTCGGTAGCCTCCCTGTCCGCCGCCGTATCCCAACT
TTCCACTCTGAGGAGTGGCATTGCCATATCCTCCCAAACGTCCTTGGCCC
GAGAGTCCAAGTGCGAATTCATTTGGGGGCACGGATGCGCCATATCCTTT
CTGTGCACTGCCGTATCCACCCTGAGTGCCGCCGTATCCCACCTGTTCAG
TCAATGGAGCGGGTTGGCCATATCCACCCTGAACGCCACCGTATCCTCCT
TGCCCGCCACCGTATCCTCCCTGCCCGCCACCGTATCCTCCTTGCCCGCC
ACCGTATCCTCCCTGCCCGCCACCGTATCCTCCTTGCCCGCTCTGGGAAG
CTGATCCGCCGTATCCGCTTGGCGAGCTGCCGTATCCACTTTGTCCGCTC
TGTGGAACGGATCTCAAACCCCACTGGGCGGTTGCTGCTCCGTCGTATCC
CGGTCTGGCCAAGGTAATGCCCATCAGGGCGAACAGGACAACCATTAATT
TCATGTCGACTGATAACT

BO12329.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-PA 639 CG8160-RA 1..636 654..19 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-RA 1072 CG8160-RA 28..663 654..19 3180 100 Minus
CG8160-RA 1072 CG8160-RA 191..269 449..371 350 96.2 Minus
CG8160-RA 1072 CG8160-RA 233..311 491..413 350 96.2 Minus
CG8160-RA 1072 CG8160-RA 191..248 428..371 200 89.7 Minus
CG8160-RA 1072 CG8160-RA 254..311 491..434 200 89.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15327552..15328176 19..643 3125 100 Plus
2R 25286936 2R 15327904..15327982 413..491 350 96.2 Plus
2R 25286936 2R 15327946..15328024 371..449 350 96.2 Plus
2R 25286936 2R 15327904..15327961 434..491 200 89.7 Plus
2R 25286936 2R 15327967..15328024 371..428 200 89.7 Plus
Blast to na_te.dros performed on 2015-02-12 03:53:56 has no hits.

BO12329.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:39 Download gff for BO12329.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-PA 1..639 15..654 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:09 Download gff for BO12329.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-PA 1..639 15..654 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:46 Download gff for BO12329.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 20..666 15..664 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:46 Download gff for BO12329.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 20..666 15..664 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:46 Download gff for BO12329.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15327548..15328179 15..648 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:46 Download gff for BO12329.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11215053..11215684 15..648 99   Plus

BO12329.5prime Sequence

668 bp (667 high quality bases) assembled on 2006-04-20

> BO12329.5prime
GAAGTTATCAGTCGACATGAAATTAATGGTTGTCCTGTTCGCCCTGATGG
GCATTACCTTGGCCAGACCGGGATACGACGGAGCAGCAACCGCCCAGTGG
GGTTTGAGATCCGTTCCACAGAGCGGACAAAGTGGATACGGCAGCTCGCC
AAGCGGATACGGCGGATCAGCTTCCCAGAGCGGGCAAGGAGGATACGGTG
GCGGGCAGGGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGGGCAG
GGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGTTCAGGGTGGATA
TGGCCAACCCGCTCCATTGACTGAACAGGTGGGATACGGCGGCACTCAGG
GTGGATACGGCAGTGCACAGAAAGGATATGGCGCATCCGTGCCCCCAAAT
GAATTCGCACTTGGACTCTCGGGCCAAGGACGTTTGGGAGGATATGGCAA
TGCCACTCCTCAGAGTGGAAAGTTGGGATACGGCGGCGGACAGGGAGGCT
ACCGAAGACCAGCTCCCCAATCGGGCCAGTTATATGCCGCAGGAGAGCTC
GGAGCAGGCCCCCAACTTGTACAGGGAGAATTCTCCGGCGGAATTGGTCA
CGAGAACTGTAACCACGAGCATCACAAGCATCATGGACATCATGGACGTT
ACGCAAGCTTTCTAGACC

BO12329.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-PA 639 CG8160-RA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-RA 1072 CG8160-RA 28..663 17..652 3180 100 Plus
CG8160-RA 1072 CG8160-RA 191..269 222..300 350 96.2 Plus
CG8160-RA 1072 CG8160-RA 233..311 180..258 350 96.2 Plus
CG8160-RA 1072 CG8160-RA 191..248 243..300 200 89.7 Plus
CG8160-RA 1072 CG8160-RA 254..311 180..237 200 89.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15327552..15328176 652..28 3125 100 Minus
2R 25286936 2R 15327904..15327982 258..180 350 96.2 Minus
2R 25286936 2R 15327946..15328024 300..222 350 96.2 Minus
2R 25286936 2R 15327904..15327961 237..180 200 89.7 Minus
2R 25286936 2R 15327967..15328024 300..243 200 89.7 Minus
Blast to na_te.dros performed on 2015-02-04 03:24:36 has no hits.

BO12329.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:40 Download gff for BO12329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-PA 1..639 17..656 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:10 Download gff for BO12329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-PA 1..639 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:17 Download gff for BO12329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 20..666 7..656 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:59 Download gff for BO12329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 20..666 7..656 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:59 Download gff for BO12329.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15327548..15328179 23..656 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:17 Download gff for BO12329.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11215053..11215684 23..656 99   Minus

BO12329.complete Sequence

670 bp assembled on 2006-10-11

GenBank Submission: FJ632407

> BO12329.complete
GAAGTTATCAGTCGACATGAAATTAATGGTTGTCCTGTTCGCCCTGATGG
GCATTACCTTGGCCAGACCGGGATACGACGGAGCAGCAACCGCCCAGTGG
GGTTTGAGATCCGTTCCACAGAGCGGACAAAGTGGATACGGCAGCTCGCC
AAGCGGATACGGCGGATCAGCTTCCCAGAGCGGGCAAGGAGGATACGGTG
GCGGGCAGGGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGGGCAG
GGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGTTCAGGGTGGATA
TGGCCAACCCGCTCCATTGACTGAACAGGTGGGATACGGCGGCACTCAGG
GTGGATACGGCAGTGCACAGAAAGGATATGGCGCATCCGTGCCCCCAAAT
GAATTCGCACTTGGACTCTCGGGCCAAGGACGTTTGGGAGGATATGGCAA
TGCCACTCCTCAGAGTGGAAAGTTGGGATACGGCGGCGGACAGGGAGGCT
ACCGAAGACCAGCTCCCCAATCGGGCCAGTTATATGCCGCAGGAGAGCTC
GGAGCAGGCCCCCAACTTGTACAGGGAGAATTCTCCGGCGGAATTGGTCA
CGAGAACTGTAACCACGAGCATCACAAGCATCATGGACATCATGGACGTT
ACGCAAGCTTTCTAGACCAT

BO12329.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-RA 639 CG8160-PA 1..636 17..652 3180 100 Plus
CG8160-RA 639 CG8160-PA 164..242 222..300 350 96.2 Plus
CG8160-RA 639 CG8160-PA 206..284 180..258 350 96.2 Plus
CG8160-RA 639 CG8160-PA 164..221 243..300 200 89.7 Plus
CG8160-RA 639 CG8160-PA 227..284 180..237 200 89.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-RA 1072 CG8160-RA 28..663 17..652 3180 100 Plus
CG8160-RA 1072 CG8160-RA 191..269 222..300 350 96.2 Plus
CG8160-RA 1072 CG8160-RA 233..311 180..258 350 96.2 Plus
CG8160-RA 1072 CG8160-RA 191..248 243..300 200 89.7 Plus
CG8160-RA 1072 CG8160-RA 254..311 180..237 200 89.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15327552..15328176 652..28 3125 100 Minus
2R 25286936 2R 15327904..15327982 258..180 350 96.2 Minus
2R 25286936 2R 15327946..15328024 300..222 350 96.2 Minus
2R 25286936 2R 15327904..15327961 237..180 200 89.7 Minus
2R 25286936 2R 15327967..15328024 300..243 200 89.7 Minus
Blast to na_te.dros performed on 2014-11-27 14:45:59 has no hits.

BO12329.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:28 Download gff for BO12329.complete
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 1..639 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:58 Download gff for BO12329.complete
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 14..660 7..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:41 Download gff for BO12329.complete
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 28..663 17..654 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:29 Download gff for BO12329.complete
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 14..660 7..656 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:20 Download gff for BO12329.complete
Subject Subject Range Query Range Percent Splice Strand
CG8160-RA 28..663 17..654 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:20 Download gff for BO12329.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15327550..15328179 23..654 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:41 Download gff for BO12329.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11215055..11215684 23..654 99   Minus

BO12329.pep Sequence

Translation from 16 to 670

> BO12329.pep
MKLMVVLFALMGITLARPGYDGAATAQWGLRSVPQSGQSGYGSSPSGYGG
SASQSGQGGYGGGQGGYGGGQGGYGGGQGGYGGGQGGYGGVQGGYGQPAP
LTEQVGYGGTQGGYGSAQKGYGASVPPNEFALGLSGQGRLGGYGNATPQS
GKLGYGGGQGGYRRPAPQSGQLYAAGELGAGPQLVQGEFSGGIGHENCNH
EHHKHHGHHGRYASFLDH

BO12329.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8160-PA 212 CG8160-PA 1..212 1..212 1175 100 Plus
CG8157-PB 113 CG8157-PB 1..107 1..122 252 45.9 Plus
CG8157-PA 113 CG8157-PA 1..107 1..122 252 45.9 Plus
CG5172-PD 172 CG5172-PD 5..163 3..161 236 42 Plus
Cpr47Ef-PD 601 CG13214-PD 237..390 40..194 233 40.5 Plus
CG5172-PD 172 CG5172-PD 14..167 30..183 213 38.5 Plus
CG8157-PB 113 CG8157-PB 23..113 76..212 166 39.3 Plus
CG8157-PA 113 CG8157-PA 23..113 76..212 166 39.3 Plus