Clone Sequence Records
BO12329.3prime Sequence
668 bp (667 high quality bases) assembled on 2006-04-20
> BO12329.3prime
ATGGTCTAGAAAGCTTGCGTAACGTCCATGATGTCCATGATGCTTGTGAT
GCTCGTGGTTACAGTTCTCGTGACCAATTCCGCCGGAGAATTCTCCCTGT
ACAAGTTGGGGGCCTGCTCCGAGCTCTCCTGCGGCATATAACTGGCCCGA
TTGGGGAGCTGGTCTTCGGTAGCCTCCCTGTCCGCCGCCGTATCCCAACT
TTCCACTCTGAGGAGTGGCATTGCCATATCCTCCCAAACGTCCTTGGCCC
GAGAGTCCAAGTGCGAATTCATTTGGGGGCACGGATGCGCCATATCCTTT
CTGTGCACTGCCGTATCCACCCTGAGTGCCGCCGTATCCCACCTGTTCAG
TCAATGGAGCGGGTTGGCCATATCCACCCTGAACGCCACCGTATCCTCCT
TGCCCGCCACCGTATCCTCCCTGCCCGCCACCGTATCCTCCTTGCCCGCC
ACCGTATCCTCCCTGCCCGCCACCGTATCCTCCTTGCCCGCTCTGGGAAG
CTGATCCGCCGTATCCGCTTGGCGAGCTGCCGTATCCACTTTGTCCGCTC
TGTGGAACGGATCTCAAACCCCACTGGGCGGTTGCTGCTCCGTCGTATCC
CGGTCTGGCCAAGGTAATGCCCATCAGGGCGAACAGGACAACCATTAATT
TCATGTCGACTGATAACT
BO12329.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-PA | 639 | CG8160-RA | 1..636 | 654..19 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-RA | 1072 | CG8160-RA | 28..663 | 654..19 | 3180 | 100 | Minus |
CG8160-RA | 1072 | CG8160-RA | 191..269 | 449..371 | 350 | 96.2 | Minus |
CG8160-RA | 1072 | CG8160-RA | 233..311 | 491..413 | 350 | 96.2 | Minus |
CG8160-RA | 1072 | CG8160-RA | 191..248 | 428..371 | 200 | 89.7 | Minus |
CG8160-RA | 1072 | CG8160-RA | 254..311 | 491..434 | 200 | 89.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15327552..15328176 | 19..643 | 3125 | 100 | Plus |
2R | 25286936 | 2R | 15327904..15327982 | 413..491 | 350 | 96.2 | Plus |
2R | 25286936 | 2R | 15327946..15328024 | 371..449 | 350 | 96.2 | Plus |
2R | 25286936 | 2R | 15327904..15327961 | 434..491 | 200 | 89.7 | Plus |
2R | 25286936 | 2R | 15327967..15328024 | 371..428 | 200 | 89.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:53:56 has no hits.
BO12329.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:39 Download gff for
BO12329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-PA | 1..639 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:09 Download gff for
BO12329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-PA | 1..639 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:46 Download gff for
BO12329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 20..666 | 15..664 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:46 Download gff for
BO12329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 20..666 | 15..664 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:46 Download gff for
BO12329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15327548..15328179 | 15..648 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:46 Download gff for
BO12329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11215053..11215684 | 15..648 | 99 | | Plus |
BO12329.5prime Sequence
668 bp (667 high quality bases) assembled on 2006-04-20
> BO12329.5prime
GAAGTTATCAGTCGACATGAAATTAATGGTTGTCCTGTTCGCCCTGATGG
GCATTACCTTGGCCAGACCGGGATACGACGGAGCAGCAACCGCCCAGTGG
GGTTTGAGATCCGTTCCACAGAGCGGACAAAGTGGATACGGCAGCTCGCC
AAGCGGATACGGCGGATCAGCTTCCCAGAGCGGGCAAGGAGGATACGGTG
GCGGGCAGGGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGGGCAG
GGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGTTCAGGGTGGATA
TGGCCAACCCGCTCCATTGACTGAACAGGTGGGATACGGCGGCACTCAGG
GTGGATACGGCAGTGCACAGAAAGGATATGGCGCATCCGTGCCCCCAAAT
GAATTCGCACTTGGACTCTCGGGCCAAGGACGTTTGGGAGGATATGGCAA
TGCCACTCCTCAGAGTGGAAAGTTGGGATACGGCGGCGGACAGGGAGGCT
ACCGAAGACCAGCTCCCCAATCGGGCCAGTTATATGCCGCAGGAGAGCTC
GGAGCAGGCCCCCAACTTGTACAGGGAGAATTCTCCGGCGGAATTGGTCA
CGAGAACTGTAACCACGAGCATCACAAGCATCATGGACATCATGGACGTT
ACGCAAGCTTTCTAGACC
BO12329.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-PA | 639 | CG8160-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-RA | 1072 | CG8160-RA | 28..663 | 17..652 | 3180 | 100 | Plus |
CG8160-RA | 1072 | CG8160-RA | 191..269 | 222..300 | 350 | 96.2 | Plus |
CG8160-RA | 1072 | CG8160-RA | 233..311 | 180..258 | 350 | 96.2 | Plus |
CG8160-RA | 1072 | CG8160-RA | 191..248 | 243..300 | 200 | 89.7 | Plus |
CG8160-RA | 1072 | CG8160-RA | 254..311 | 180..237 | 200 | 89.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15327552..15328176 | 652..28 | 3125 | 100 | Minus |
2R | 25286936 | 2R | 15327904..15327982 | 258..180 | 350 | 96.2 | Minus |
2R | 25286936 | 2R | 15327946..15328024 | 300..222 | 350 | 96.2 | Minus |
2R | 25286936 | 2R | 15327904..15327961 | 237..180 | 200 | 89.7 | Minus |
2R | 25286936 | 2R | 15327967..15328024 | 300..243 | 200 | 89.7 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:24:36 has no hits.
BO12329.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:40 Download gff for
BO12329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-PA | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:10 Download gff for
BO12329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-PA | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:17 Download gff for
BO12329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 20..666 | 7..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:59 Download gff for
BO12329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 20..666 | 7..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:59 Download gff for
BO12329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15327548..15328179 | 23..656 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:17 Download gff for
BO12329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11215053..11215684 | 23..656 | 99 | | Minus |
BO12329.complete Sequence
670 bp assembled on 2006-10-11
GenBank Submission: FJ632407
> BO12329.complete
GAAGTTATCAGTCGACATGAAATTAATGGTTGTCCTGTTCGCCCTGATGG
GCATTACCTTGGCCAGACCGGGATACGACGGAGCAGCAACCGCCCAGTGG
GGTTTGAGATCCGTTCCACAGAGCGGACAAAGTGGATACGGCAGCTCGCC
AAGCGGATACGGCGGATCAGCTTCCCAGAGCGGGCAAGGAGGATACGGTG
GCGGGCAGGGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGGGCAG
GGAGGATACGGTGGCGGGCAAGGAGGATACGGTGGCGTTCAGGGTGGATA
TGGCCAACCCGCTCCATTGACTGAACAGGTGGGATACGGCGGCACTCAGG
GTGGATACGGCAGTGCACAGAAAGGATATGGCGCATCCGTGCCCCCAAAT
GAATTCGCACTTGGACTCTCGGGCCAAGGACGTTTGGGAGGATATGGCAA
TGCCACTCCTCAGAGTGGAAAGTTGGGATACGGCGGCGGACAGGGAGGCT
ACCGAAGACCAGCTCCCCAATCGGGCCAGTTATATGCCGCAGGAGAGCTC
GGAGCAGGCCCCCAACTTGTACAGGGAGAATTCTCCGGCGGAATTGGTCA
CGAGAACTGTAACCACGAGCATCACAAGCATCATGGACATCATGGACGTT
ACGCAAGCTTTCTAGACCAT
BO12329.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-RA | 639 | CG8160-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
CG8160-RA | 639 | CG8160-PA | 164..242 | 222..300 | 350 | 96.2 | Plus |
CG8160-RA | 639 | CG8160-PA | 206..284 | 180..258 | 350 | 96.2 | Plus |
CG8160-RA | 639 | CG8160-PA | 164..221 | 243..300 | 200 | 89.7 | Plus |
CG8160-RA | 639 | CG8160-PA | 227..284 | 180..237 | 200 | 89.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-RA | 1072 | CG8160-RA | 28..663 | 17..652 | 3180 | 100 | Plus |
CG8160-RA | 1072 | CG8160-RA | 191..269 | 222..300 | 350 | 96.2 | Plus |
CG8160-RA | 1072 | CG8160-RA | 233..311 | 180..258 | 350 | 96.2 | Plus |
CG8160-RA | 1072 | CG8160-RA | 191..248 | 243..300 | 200 | 89.7 | Plus |
CG8160-RA | 1072 | CG8160-RA | 254..311 | 180..237 | 200 | 89.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15327552..15328176 | 652..28 | 3125 | 100 | Minus |
2R | 25286936 | 2R | 15327904..15327982 | 258..180 | 350 | 96.2 | Minus |
2R | 25286936 | 2R | 15327946..15328024 | 300..222 | 350 | 96.2 | Minus |
2R | 25286936 | 2R | 15327904..15327961 | 237..180 | 200 | 89.7 | Minus |
2R | 25286936 | 2R | 15327967..15328024 | 300..243 | 200 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:45:59 has no hits.
BO12329.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:28 Download gff for
BO12329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:58 Download gff for
BO12329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 14..660 | 7..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:41 Download gff for
BO12329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 28..663 | 17..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:29 Download gff for
BO12329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 14..660 | 7..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:20 Download gff for
BO12329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8160-RA | 28..663 | 17..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:20 Download gff for
BO12329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15327550..15328179 | 23..654 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:41 Download gff for
BO12329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11215055..11215684 | 23..654 | 99 | | Minus |
BO12329.pep Sequence
Translation from 16 to 670
> BO12329.pep
MKLMVVLFALMGITLARPGYDGAATAQWGLRSVPQSGQSGYGSSPSGYGG
SASQSGQGGYGGGQGGYGGGQGGYGGGQGGYGGGQGGYGGVQGGYGQPAP
LTEQVGYGGTQGGYGSAQKGYGASVPPNEFALGLSGQGRLGGYGNATPQS
GKLGYGGGQGGYRRPAPQSGQLYAAGELGAGPQLVQGEFSGGIGHENCNH
EHHKHHGHHGRYASFLDH
BO12329.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8160-PA | 212 | CG8160-PA | 1..212 | 1..212 | 1175 | 100 | Plus |
CG8157-PB | 113 | CG8157-PB | 1..107 | 1..122 | 252 | 45.9 | Plus |
CG8157-PA | 113 | CG8157-PA | 1..107 | 1..122 | 252 | 45.9 | Plus |
CG5172-PD | 172 | CG5172-PD | 5..163 | 3..161 | 236 | 42 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 237..390 | 40..194 | 233 | 40.5 | Plus |
CG5172-PD | 172 | CG5172-PD | 14..167 | 30..183 | 213 | 38.5 | Plus |
CG8157-PB | 113 | CG8157-PB | 23..113 | 76..212 | 166 | 39.3 | Plus |
CG8157-PA | 113 | CG8157-PA | 23..113 | 76..212 | 166 | 39.3 | Plus |