Clone BO12331 Report

Search the DGRC for BO12331

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG14210-RA
Protein status:BO12331.pep: validated full length
Sequenced Size:454

Clone Sequence Records

BO12331.3prime Sequence

452 bp (451 high quality bases) assembled on 2006-04-20

> BO12331.3prime
ATGGTCTAGAAAGCTTGCGACCACCTTCACCTGGCTGACGTCCCGCTTCT
CGATCATGCGCATCTGTTTCTTCTTCATGCGCTTCAGCTTGGCGGGATTC
TTGATGACCTGGACGACCTCCGAGCGGCGCTCGTTCGCCAGCCGGCGCTC
GGCATTCTCCACGCGGCGCTGGTGCTTTTGGACGGCATCCTCCTTGCGCT
TGTCCTTGATCTCCTTGGAGCGCTCCTTGATGTAGCGCAGCTCGTCGCGC
AGGGCCGTCTTCTTTTCGAAGGACAGTCGGTTAACGGTCTTCTTAATCTT
GCTAAATTTCTGCTTGGGCGTCTTCCACGGCCGGTTCGACTTGGGCTGGC
CGCGTGGTATGCTGTTCTCCGGCTTTGCCGCCTTCTTGGCCTTTGCCGGC
TTCTTGGCTGGCACAGTTTCCGGTGCGGATTCACTCATGTCGACTGATAA
CT

BO12331.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-PA 423 CG14210-RA 1..420 438..19 2100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-RB 559 CG14210-RB 81..500 438..19 2100 100 Minus
CG14210-RA 567 CG14210-RA 81..500 438..19 2100 100 Minus
CG12788-RC 1704 CG12788-RC 1609..1704 19..114 480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19616470..19616758 307..19 1445 100 Minus
X 23542271 X 19616276..19616406 438..308 655 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:36:13 has no hits.

BO12331.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:43 Download gff for BO12331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-PA 1..423 16..438 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:14 Download gff for BO12331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-PA 1..423 16..438 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:20:28 Download gff for BO12331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 81..500 19..438 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:35 Download gff for BO12331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 81..500 19..438 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:35 Download gff for BO12331.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19616281..19616406 308..433 100 -> Minus
X 19616470..19616758 19..307 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:20:28 Download gff for BO12331.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19510314..19510439 308..433 100 -> Minus
arm_X 19510503..19510791 19..307 100   Minus

BO12331.5prime Sequence

452 bp (451 high quality bases) assembled on 2006-04-20

> BO12331.5prime
GAAGTTATCAGTCGACATGAGTGAATCCGCACCGGAAACTGTGCCAGCCA
AGAAGCCGGCAAAGGCCAAGAAGGCGGCAAAGCCGGAGAACAGCATACCA
CGCGGCCAGCCCAAGTCGAACCGGCCGTGGAAGACGCCCAAGCAGAAATT
TAGCAAGATTAAGAAGACCGTTAACCGACTGTCCTTCGAAAAGAAGACGG
CCCTGCGCGACGAGCTGCGCTACATCAAGGAGCGCTCCAAGGAGATCAAG
GACAAGCGCAAGGAGGATGCCGTCCAAAAGCACCAGCGCCGCGTGGAGAA
TGCCGAGCGCCGGCTGGCGAACGAGCGCCGCTCGGAGGTCGTCCAGGTCA
TCAAGAATCCCGCCAAGCTGAAGCGCATGAAGAAGAAACAGATGCGCATG
ATCGAGAAGCGGGACGTCAGCCAGGTGAAGGTGGTCGCAAGCTTTCTAGA
CC

BO12331.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-PA 423 CG14210-RA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-RB 559 CG14210-RB 81..500 17..436 2100 100 Plus
CG14210-RA 567 CG14210-RA 81..500 17..436 2100 100 Plus
CG12788-RC 1704 CG12788-RC 1609..1704 436..341 480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19616470..19616758 148..436 1445 100 Plus
X 23542271 X 19616276..19616406 17..147 655 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:11:46 has no hits.

BO12331.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:44 Download gff for BO12331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-PA 1..423 17..439 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:15 Download gff for BO12331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-PA 1..423 17..439 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:17:51 Download gff for BO12331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 81..500 17..436 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:28:58 Download gff for BO12331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 81..500 17..436 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:28:58 Download gff for BO12331.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19616281..19616406 22..147 100 -> Plus
X 19616470..19616758 148..436 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:17:51 Download gff for BO12331.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19510314..19510439 22..147 100 -> Plus
arm_X 19510503..19510791 148..436 100   Plus

BO12331.complete Sequence

454 bp assembled on 2006-10-11

GenBank Submission: FJ632408

> BO12331.complete
GAAGTTATCAGTCGACATGAGTGAATCCGCACCGGAAACTGTGCCAGCCA
AGAAGCCGGCAAAGGCCAAGAAGGCGGCAAAGCCGGAGAACAGCATACCA
CGCGGCCAGCCCAAGTCGAACCGGCCGTGGAAGACGCCCAAGCAGAAATT
TAGCAAGATTAAGAAGACCGTTAACCGACTGTCCTTCGAAAAGAAGACGG
CCCTGCGCGACGAGCTGCGCTACATCAAGGAGCGCTCCAAGGAGATCAAG
GACAAGCGCAAGGAGGATGCCGTCCAAAAGCACCAGCGCCGCGTGGAGAA
TGCCGAGCGCCGGCTGGCGAACGAGCGCCGCTCGGAGGTCGTCCAGGTCA
TCAAGAATCCCGCCAAGCTGAAGCGCATGAAGAAGAAACAGATGCGCATG
ATCGAGAAGCGGGACGTCAGCCAGGTGAAGGTGGTCGCAAGCTTTCTAGA
CCAT

BO12331.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-RB 423 CG14210-PB 1..420 17..436 2100 100 Plus
CG14210-RA 423 CG14210-PA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-RB 559 CG14210-RB 81..500 17..436 2100 100 Plus
CG14210-RA 567 CG14210-RA 81..500 17..436 2100 100 Plus
CG12788-RC 1704 CG12788-RC 1609..1704 436..341 480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19616470..19616758 148..436 1445 100 Plus
X 23542271 X 19616276..19616406 17..147 655 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:34:58 has no hits.

BO12331.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:30 Download gff for BO12331.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 1..423 17..439 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:59 Download gff for BO12331.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 70..489 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:50 Download gff for BO12331.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 81..500 17..438 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:30 Download gff for BO12331.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 70..489 17..436 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:03 Download gff for BO12331.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 81..500 17..438 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:03 Download gff for BO12331.complete
Subject Subject Range Query Range Percent Splice Strand
X 19616276..19616406 17..147 100 -> Plus
X 19616470..19616758 148..438 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:50 Download gff for BO12331.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19510309..19510439 17..147 100 -> Plus
arm_X 19510503..19510791 148..438 99   Plus

BO12331.pep Sequence

Translation from 16 to 454

> BO12331.pep
MSESAPETVPAKKPAKAKKAAKPENSIPRGQPKSNRPWKTPKQKFSKIKK
TVNRLSFEKKTALRDELRYIKERSKEIKDKRKEDAVQKHQRRVENAERRL
ANERRSEVVQVIKNPAKLKRMKKKQMRMIEKRDVSQVKVVASFLDH

BO12331.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-PB 140 CG14210-PB 1..140 1..140 700 100 Plus
CG14210-PA 140 CG14210-PA 1..140 1..140 700 100 Plus