Clone Sequence Records
BO12331.3prime Sequence
452 bp (451 high quality bases) assembled on 2006-04-20
> BO12331.3prime
ATGGTCTAGAAAGCTTGCGACCACCTTCACCTGGCTGACGTCCCGCTTCT
CGATCATGCGCATCTGTTTCTTCTTCATGCGCTTCAGCTTGGCGGGATTC
TTGATGACCTGGACGACCTCCGAGCGGCGCTCGTTCGCCAGCCGGCGCTC
GGCATTCTCCACGCGGCGCTGGTGCTTTTGGACGGCATCCTCCTTGCGCT
TGTCCTTGATCTCCTTGGAGCGCTCCTTGATGTAGCGCAGCTCGTCGCGC
AGGGCCGTCTTCTTTTCGAAGGACAGTCGGTTAACGGTCTTCTTAATCTT
GCTAAATTTCTGCTTGGGCGTCTTCCACGGCCGGTTCGACTTGGGCTGGC
CGCGTGGTATGCTGTTCTCCGGCTTTGCCGCCTTCTTGGCCTTTGCCGGC
TTCTTGGCTGGCACAGTTTCCGGTGCGGATTCACTCATGTCGACTGATAA
CT
BO12331.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-PA | 423 | CG14210-RA | 1..420 | 438..19 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-RB | 559 | CG14210-RB | 81..500 | 438..19 | 2100 | 100 | Minus |
CG14210-RA | 567 | CG14210-RA | 81..500 | 438..19 | 2100 | 100 | Minus |
CG12788-RC | 1704 | CG12788-RC | 1609..1704 | 19..114 | 480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19616470..19616758 | 307..19 | 1445 | 100 | Minus |
X | 23542271 | X | 19616276..19616406 | 438..308 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:36:13 has no hits.
BO12331.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:43 Download gff for
BO12331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-PA | 1..423 | 16..438 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:14 Download gff for
BO12331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-PA | 1..423 | 16..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:20:28 Download gff for
BO12331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 81..500 | 19..438 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:35 Download gff for
BO12331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 81..500 | 19..438 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:35 Download gff for
BO12331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19616281..19616406 | 308..433 | 100 | -> | Minus |
X | 19616470..19616758 | 19..307 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:20:28 Download gff for
BO12331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19510314..19510439 | 308..433 | 100 | -> | Minus |
arm_X | 19510503..19510791 | 19..307 | 100 | | Minus |
BO12331.5prime Sequence
452 bp (451 high quality bases) assembled on 2006-04-20
> BO12331.5prime
GAAGTTATCAGTCGACATGAGTGAATCCGCACCGGAAACTGTGCCAGCCA
AGAAGCCGGCAAAGGCCAAGAAGGCGGCAAAGCCGGAGAACAGCATACCA
CGCGGCCAGCCCAAGTCGAACCGGCCGTGGAAGACGCCCAAGCAGAAATT
TAGCAAGATTAAGAAGACCGTTAACCGACTGTCCTTCGAAAAGAAGACGG
CCCTGCGCGACGAGCTGCGCTACATCAAGGAGCGCTCCAAGGAGATCAAG
GACAAGCGCAAGGAGGATGCCGTCCAAAAGCACCAGCGCCGCGTGGAGAA
TGCCGAGCGCCGGCTGGCGAACGAGCGCCGCTCGGAGGTCGTCCAGGTCA
TCAAGAATCCCGCCAAGCTGAAGCGCATGAAGAAGAAACAGATGCGCATG
ATCGAGAAGCGGGACGTCAGCCAGGTGAAGGTGGTCGCAAGCTTTCTAGA
CC
BO12331.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-PA | 423 | CG14210-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-RB | 559 | CG14210-RB | 81..500 | 17..436 | 2100 | 100 | Plus |
CG14210-RA | 567 | CG14210-RA | 81..500 | 17..436 | 2100 | 100 | Plus |
CG12788-RC | 1704 | CG12788-RC | 1609..1704 | 436..341 | 480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19616470..19616758 | 148..436 | 1445 | 100 | Plus |
X | 23542271 | X | 19616276..19616406 | 17..147 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:11:46 has no hits.
BO12331.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:44 Download gff for
BO12331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-PA | 1..423 | 17..439 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:15 Download gff for
BO12331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-PA | 1..423 | 17..439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:17:51 Download gff for
BO12331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 81..500 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:28:58 Download gff for
BO12331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 81..500 | 17..436 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:28:58 Download gff for
BO12331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19616281..19616406 | 22..147 | 100 | -> | Plus |
X | 19616470..19616758 | 148..436 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:17:51 Download gff for
BO12331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19510314..19510439 | 22..147 | 100 | -> | Plus |
arm_X | 19510503..19510791 | 148..436 | 100 | | Plus |
BO12331.complete Sequence
454 bp assembled on 2006-10-11
GenBank Submission: FJ632408
> BO12331.complete
GAAGTTATCAGTCGACATGAGTGAATCCGCACCGGAAACTGTGCCAGCCA
AGAAGCCGGCAAAGGCCAAGAAGGCGGCAAAGCCGGAGAACAGCATACCA
CGCGGCCAGCCCAAGTCGAACCGGCCGTGGAAGACGCCCAAGCAGAAATT
TAGCAAGATTAAGAAGACCGTTAACCGACTGTCCTTCGAAAAGAAGACGG
CCCTGCGCGACGAGCTGCGCTACATCAAGGAGCGCTCCAAGGAGATCAAG
GACAAGCGCAAGGAGGATGCCGTCCAAAAGCACCAGCGCCGCGTGGAGAA
TGCCGAGCGCCGGCTGGCGAACGAGCGCCGCTCGGAGGTCGTCCAGGTCA
TCAAGAATCCCGCCAAGCTGAAGCGCATGAAGAAGAAACAGATGCGCATG
ATCGAGAAGCGGGACGTCAGCCAGGTGAAGGTGGTCGCAAGCTTTCTAGA
CCAT
BO12331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-RB | 423 | CG14210-PB | 1..420 | 17..436 | 2100 | 100 | Plus |
CG14210-RA | 423 | CG14210-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-RB | 559 | CG14210-RB | 81..500 | 17..436 | 2100 | 100 | Plus |
CG14210-RA | 567 | CG14210-RA | 81..500 | 17..436 | 2100 | 100 | Plus |
CG12788-RC | 1704 | CG12788-RC | 1609..1704 | 436..341 | 480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19616470..19616758 | 148..436 | 1445 | 100 | Plus |
X | 23542271 | X | 19616276..19616406 | 17..147 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:34:58 has no hits.
BO12331.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:30 Download gff for
BO12331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 1..423 | 17..439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:59 Download gff for
BO12331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 70..489 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:50 Download gff for
BO12331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 81..500 | 17..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:30 Download gff for
BO12331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 70..489 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:03 Download gff for
BO12331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14210-RA | 81..500 | 17..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:03 Download gff for
BO12331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19616276..19616406 | 17..147 | 100 | -> | Plus |
X | 19616470..19616758 | 148..438 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:50 Download gff for
BO12331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19510309..19510439 | 17..147 | 100 | -> | Plus |
arm_X | 19510503..19510791 | 148..438 | 99 | | Plus |
BO12331.pep Sequence
Translation from 16 to 454
> BO12331.pep
MSESAPETVPAKKPAKAKKAAKPENSIPRGQPKSNRPWKTPKQKFSKIKK
TVNRLSFEKKTALRDELRYIKERSKEIKDKRKEDAVQKHQRRVENAERRL
ANERRSEVVQVIKNPAKLKRMKKKQMRMIEKRDVSQVKVVASFLDH
BO12331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14210-PB | 140 | CG14210-PB | 1..140 | 1..140 | 700 | 100 | Plus |
CG14210-PA | 140 | CG14210-PA | 1..140 | 1..140 | 700 | 100 | Plus |