Clone Sequence Records
BO12336.3prime Sequence
873 bp (800 high quality bases) assembled on 2006-04-20
> BO12336.3prime
ATGGTCTAGAAAGCTTGCTTTTTTGTAAACAAAGGGCTTGGCGGTGTTGT
AGGCCAGGGAATACCTTATGTGCTTGCCAACCAATCGATCGGCTAAAGGT
ATTAAAGCCGGTTCACGTCTGTAAATCCCTGCCGCCTTTGGTGTCCAGGC
CCGTAGACGACACTCCGAGTGGCCCGGCAGCAGGATTCCCATCCAGCCCG
CAGAGCTGAGCGTAATATCACAGTTAAGCCTCGTTTCCTCGTTCCTTCCT
TCACTTGCCAGCACAATATCCCCATCCTTGCATTGCAATCCCGGCCAGCG
TCGCAGGCGGGCCTCCAAGTTCTCGCTAGCGAAGGGAACACCCAGAAAGG
GCGAACCCACGTATCTTTTGTACACGCTTTCCGCCTCCTGTGTATCTGCT
ATCATGATGGGAAGATGCTCTGAGGCAAATACAAACACCTTCAGCCAGTC
AAAGTGTTTCCTTGGGCTTGTTATTTCCAGCAGATCCAATCTGGCCAAAC
CGCCCAGTAGTATGCTCATCTGGGGCCGCAGCCGAAAGGCGCGCGGTCGG
ATCATGGTGGCGGGCTGCAGCTTTACCAGCTCCTCGGCGGTGAGCAGGGG
AGATATTTGGTCGGGTTGCATCACACCCGGTGTGTCGTAGACCCAACGCG
CTTCCTTGTACTCCTTGCCCCGATCGTTTAGCGTTGTAATCGGTCGCGAG
CCACCGGCCATGGCAAAGGCATCATGGAGATTTTCGCGTCGATCGAAGGT
GCGTCCAACCGGAGCCACTGGTTGAGCAGCTGCCGCTGAACCCGTTTCCC
TTGCCACTGCGCGACGCTCCTTTTCCATTTCCGCCTTCTCGCTGCGCTCC
GAAACCAATCTCTTAAAGCGCTG
BO12336.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10914-PA | 1875 | CG10914-RA | 1018..1872 | 873..19 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10914-RA | 2054 | CG10914-RA | 1057..1911 | 873..19 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18159313..18160167 | 873..19 | 4275 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 03:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 4810..4844 | 425..390 | 123 | 86.1 | Minus |
BO12336.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:53 Download gff for
BO12336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10914-PA | 1018..1875 | 15..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:27 Download gff for
BO12336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10914-PA | 1018..1875 | 15..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:42 Download gff for
BO12336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10914-RA | 1057..1914 | 15..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:35 Download gff for
BO12336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10914-RA | 1057..1914 | 15..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:35 Download gff for
BO12336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18159313..18160170 | 15..873 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:42 Download gff for
BO12336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14046818..14047675 | 15..873 | 99 | | Minus |
BO12336.5prime Sequence
924 bp (781 high quality bases) assembled on 2006-04-20
> BO12336.5prime
GAAGTTATCAGTCGACATGTTTAAAACCACACGTTTATATAAAATTATAA
ATAAAAATGTGGTTATCACATGTTCGAGGCGGCAGAATACCGCCGCTGAA
GTGGGACAGAGCTTTCGGCAGAGGGCGTGGCTGCTCGCCAGAGAGCGGTA
CAAGGATCATGAGCACGTTCATTACAGCTCTGTTCTGGAGACCAAAATAA
AACCCTCTTTCTCGATTCCTGAGACACAACAGCATTTGCCCGACGACTGG
ATGGACGACTACGAGTTCTATCAGGGCGCCCAGGAGGGAGGGAATAAGCA
GGGCACACCGGATCCTTCGTTACCCGCCTCAAAGGTTCCATGCAACGGCT
GCGGCGCAGACCTTCATTGCACGAATGCCTCCCTGCCAGGCTATATACCA
AGTGAAATATTCAGGGATAGGACGCAGCAGGAACTGCAAACGATCACCTG
CAAGCGTTGTCACTTTCTGAACCACTACAACATCGCATTGGATGTGGTGG
TGGCCCCATCGACCTATGTGGACACCATATCCCGCATTCAAGACAAATTT
GCACTGGCTATTGTTCTGGTGGACCTTCTCGATTTTCCCTGCTCCATTTG
GCCGGGCATGCAAAACATATTGGGCGCAAAGCGACCCGTCTTCCTGGTGG
GCAACAAGGTCGATCTGCTGCCGCGCGACTCCAACATCTATCTTCAGCAT
ATTAAGGATTCTCTGCAGCGCGAGTTCATCAAGCATGGCGGTGGAAATGG
TCTAAATATCAAGAATGTCAGTTTGATATCCGCCAAAACGGGCTATGGCA
TCGAGGAGCTAATAACGCAGCTGCACAAAACGTGGGCCTACAAAGGCGAT
GTCTATCTGGTGGGGCTGCACCAATGTGGGCAAGAGCTCGCTGTTCAACA
TTCTGCTTAACTCGGACTACTGCC
BO12336.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10914-PA | 1875 | CG10914-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
| CG10914-PA | 1875 | CG10914-RA | 846..907 | 863..924 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10914-RA | 2054 | CG10914-RA | 40..946 | 17..924 | 4515 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18158296..18159202 | 17..924 | 4490 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:27:45 has no hits.
BO12336.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:32:54 Download gff for
BO12336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10914-PA | 1..907 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:29 Download gff for
BO12336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10914-PA | 1..907 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:49:18 Download gff for
BO12336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10914-RA | 40..946 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:43 Download gff for
BO12336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10914-RA | 40..946 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:43 Download gff for
BO12336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18158296..18159202 | 17..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:49:18 Download gff for
BO12336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14045801..14046707 | 17..924 | 99 | | Plus |
BO12336.complete Sequence
1906 bp assembled on 2008-11-10
GenBank Submission: KX797621
> BO12336.complete
GAAGTTATCAGTCGACATGTTTAAAACCACACGTTTATATAAAATTATAA
ATAAAAATGTGGTTATCACATGTTCGAGGCGGCAGAATACCGCCGCTGAA
GTGGGACAGAGCTTTCGGCAGAGGGCGTGGCTGCTCGCCAGAGAGCGGTA
CAAGGATCATGAGCACGTTCATTACAGCTCTGTTCTGGAGACCAAAATAA
AACCCTCTTTCTCGATTCCTGAGACACAACAGCATTTGCCCGACGACTGG
ATGGACGACTACGAGTTCTATCAGGGCGCCCAGGAGGGAGGGAATAAGCA
GGGCACACCGGATCCTTCGTTACCCGCCTCAAAGGTTCCATGCAACGGCT
GCGGCGCAGACCTTCATTGCACGAATGCCTCCCTGCCAGGCTATATACCA
AGTGAAATATTCAGGGATAGGACGCAGCAGGAACTGCAAACGATCACCTG
CAAGCGTTGTCACTTTCTGAACCACTACAACATCGCATTGGATGTGGTGG
TGGCCCCATCGACCTATGTGGACACCATATCCCGCATTCAAGACAAATTT
GCACTGGCTATTGTTCTGGTGGACCTTCTCGATTTTCCCTGCTCCATTTG
GCCGGGCATGCAAAACATATTGGGCGCAAAGCGACCCGTCTTCCTGGTGG
GCAACAAGGTCGATCTGCTGCCGCGCGACTCCAACATCTATCTTCAGCAT
ATTAAGGATTCTCTGCAGCGCGAGTTCATCAAGCATGGCGGTGGAAATGG
TCTAAATATCAAGAATGTCAGTTTGATATCCGCCAAAACGGGCTATGGCA
TCGAGGAGCTAATAACGCAGCTGCACAAAACGTGGGCCTACAAAGGCGAT
GTCTATCTGGTGGGCTGCACCAATGTGGGCAAGAGCTCGCTGTTCAACAT
TCTGCTTAACTCGGACTACTGCCGGCCGGAGGCCAGTGACCTGGTGCGCA
AGGCCACCACCTGTCCGTGGCCGGGCACCACACTCAAACTGCTGCGGTTT
CCAATCTTGCGTCCATCGAACGATCGAGTCTATCAGCGCTTTAAGAGATT
GGTTTCGGAGCGCAGCGAGAAGGCGGAAATGGAAAAGGAGCGTCGCGCAG
TGGCAAGGGAAACGGGTTCAGCGGCAGCTGCTCAACCAGTGGCTCCGGTT
GGACGCACCTTCGATCGACGCGAAAATCTCCATGATGCCTTTGCCATGGC
CGGTGGCTCGCGACCGATTACAACGCTAAACGATCGGGGCAAGGAGTACA
AGGAAGCGCGTTGGGTCTACGACACACCGGGTGTGATGCAACCCGACCAA
ATATCTCCCCTGCTCACCGCCGAGGAGCTGGTAAAGCTGCAGCCCGCCAC
CATGATCCGACCGCGCGCCTTTCGGCTGCGGCCCCAGATGAGCATACTAC
TGGGCGGTTTGGCCAGATTGGATCTGCTGGAAATAACAAGCCCAAGGAAA
CACTTTGACTGGCTGAAGGTGTTTGTATTTGCCTCAGAGCATCTTCCCAT
CATGATAGCAGATACACAGGAGGCGGAAAGCGTGTACAAAAGATACGTGG
GTTCGCCCTTTCTGGGTGTTCCCTTCGCTAGCGAGAACTTGGAGGCCCGC
CTGCGACGCTGGCCGGGATTGCAATGCAAGGATGGGGATATTGTGCTGGC
AAGTGAAGGAAGGAACGAGGAAACGAGGCTTAACTGTGATATTACGCTCA
GCTCTGCGGGCTGGATGGGAATCCTGCTGCCGGGCCACTCGGAGTGTCGT
CTACGGGCCTGGACACCAAAGGCGGCAGGGATTTACAGACGTGAACCGGC
TTTAATACCTTTAGCCGATCGATTGGTTGGCAAGCACATAAGGTATTCCC
TGGCCTACAACACCGCCAAGCCCTTTGTTTACAAAAAAGCAAGCTTTCTA
GACCAT
BO12336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10914-RA | 1875 | CG10914-PA | 1..1872 | 17..1888 | 9360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10914-RA | 2054 | CG10914-RA | 40..1911 | 17..1888 | 9360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18158296..18160167 | 17..1888 | 9360 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 4810..4844 | 1482..1517 | 123 | 86.1 | Plus |
BO12336.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:27 Download gff for
BO12336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10914-RA | 30..1904 | 17..1892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:06 Download gff for
BO12336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10914-RA | 46..1905 | 23..1882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:11 Download gff for
BO12336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10914-RA | 36..1895 | 23..1882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:05 Download gff for
BO12336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10914-RA | 46..1905 | 23..1882 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:05 Download gff for
BO12336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18158302..18160161 | 23..1882 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:06 Download gff for
BO12336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14045807..14047666 | 23..1882 | 100 | | Plus |
BO12336.pep Sequence
Translation from 16 to 1906
> BO12336.pep
MFKTTRLYKIINKNVVITCSRRQNTAAEVGQSFRQRAWLLARERYKDHEH
VHYSSVLETKIKPSFSIPETQQHLPDDWMDDYEFYQGAQEGGNKQGTPDP
SLPASKVPCNGCGADLHCTNASLPGYIPSEIFRDRTQQELQTITCKRCHF
LNHYNIALDVVVAPSTYVDTISRIQDKFALAIVLVDLLDFPCSIWPGMQN
ILGAKRPVFLVGNKVDLLPRDSNIYLQHIKDSLQREFIKHGGGNGLNIKN
VSLISAKTGYGIEELITQLHKTWAYKGDVYLVGCTNVGKSSLFNILLNSD
YCRPEASDLVRKATTCPWPGTTLKLLRFPILRPSNDRVYQRFKRLVSERS
EKAEMEKERRAVARETGSAAAAQPVAPVGRTFDRRENLHDAFAMAGGSRP
ITTLNDRGKEYKEARWVYDTPGVMQPDQISPLLTAEELVKLQPATMIRPR
AFRLRPQMSILLGGLARLDLLEITSPRKHFDWLKVFVFASEHLPIMIADT
QEAESVYKRYVGSPFLGVPFASENLEARLRRWPGLQCKDGDIVLASEGRN
EETRLNCDITLSSAGWMGILLPGHSECRLRAWTPKAAGIYRREPALIPLA
DRLVGKHIRYSLAYNTAKPFVYKKASFLDH
BO12336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10914-PA | 624 | CG10914-PA | 1..624 | 1..624 | 3293 | 100 | Plus |
