Clone Sequence Records
BO12340.3prime Sequence
711 bp (600 high quality bases) assembled on 2006-04-20
> BO12340.3prime
ATGGTCTAGAAAGCTTGCGTTGCCCATTCCGTAGGGAGCATCGCTACGGA
CGGGTACATAGTAATCTCCAGCGACCATGTAGGCATTGGTGGTGGCTCCC
ATGCGGACGGAGCTGTAGGAGCTACCGCACTCCTTGGCCACAGCCTCCTC
GTAGTCGCCGCAGCGCATGGTGGGGAAGTTGTTCTCGGTCACGGACTCGG
CGTAGTAGATCACTGAGCGGCTGTGGGCGCAGGATCCGGTGAGATCAACA
CCACATCCGGGCTGGCTCTTTCCTCCGTTGGGGTAGAAGGCTCCCTTGCC
GATGGGCTTCAGGAATCCCAGGGTTCCTCCGTTGGTCTGGATGGACTCCA
CGTAGTAAGCATCGGTGGAGCTCAGGCGCTTGTTGGGGGAATCGTAGCTG
AAAAGGGGCAGGGCGGGGTCCAGACCAATGATGGTGTGCAGCTGGCCGTT
CTTCACATTCTTGCCAGCATAGCCCGAGACATGGGCGCCCAGGCTGTGAC
CAATCACCATGGTGTTGTCCAGGTTCAGGCCGTGATTGCTGCGCATAAAG
TTGATCAGGGTAGCCACCTGCTCGCCGACTCCGGGAACAGCCAGAACGGA
GGAGGCGTAATCCACGGAACGAGCACGTCCCCAGTCGACGGCAATCATGT
TCATGTCGCCGTGGGTGAACCAGGAATTCGCGGACACCGTAGTTGATGAA
CTCATCCTTGC
BO12340.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6295-PA | 1017 | CG6295-RA | 359..1014 | 674..19 | 3255 | 99.8 | Minus |
CG6277-PA | 1026 | CG6277-RA | 691..788 | 351..254 | 340 | 93.8 | Minus |
CG6271-PA | 1026 | CG6271-RA | 691..785 | 351..257 | 300 | 92.6 | Minus |
CG6283-PA | 1020 | CG6283-RA | 715..782 | 321..254 | 290 | 97 | Minus |
CG6277-PA | 1026 | CG6277-RA | 593..648 | 449..394 | 230 | 96.4 | Minus |
CG6271-PA | 1026 | CG6271-RA | 593..648 | 449..394 | 230 | 96.4 | Minus |
CG6295-PA | 1017 | CG6295-RA | 323..356 | 711..678 | 170 | 100 | Minus |
CG6277-PA | 1026 | CG6277-RA | 538..566 | 507..479 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6295-RA | 1091 | CG6295-RA | 348..1039 | 711..19 | 3410 | 99.6 | Minus |
CG6277-RA | 1085 | CG6277-RA | 424..1047 | 651..25 | 1085 | 78.5 | Minus |
CG6271-RA | 1072 | CG6271-RA | 559..1038 | 507..25 | 1010 | 80.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27005951..27006642 | 19..711 | 3385 | 99.6 | Plus |
3R | 32079331 | 3R | 27022109..27022732 | 25..651 | 1060 | 78.3 | Plus |
3R | 32079331 | 3R | 27025002..27025481 | 25..507 | 985 | 80.7 | Plus |
3R | 32079331 | 3R | 27020310..27020934 | 50..674 | 785 | 75 | Plus |
3R | 32079331 | 3R | 27018694..27019070 | 50..426 | 190 | 70 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:17:47 has no hits.
BO12340.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:01 Download gff for
BO12340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-PA | 323..1017 | 15..711 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:38 Download gff for
BO12340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-PA | 323..1017 | 15..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:44:40 Download gff for
BO12340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-RA | 348..1043 | 14..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:17 Download gff for
BO12340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-RA | 348..1043 | 14..711 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:17 Download gff for
BO12340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27005947..27006642 | 14..711 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:44:40 Download gff for
BO12340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22831669..22832364 | 14..711 | 99 | | Plus |
BO12340.5prime Sequence
846 bp (750 high quality bases) assembled on 2006-04-20
> BO12340.5prime
GAAGTTATCAGTCGACATGATGAAACTGTTCCTGGCCTTGGCCTTTTGTG
TCCTGGCGGCTAATGCCGTGGAGGTTCGTGTGAATGGTGAGAACGGATGG
TATGTGCCCCAGGCCGATGGTACCATGGAGTGGATGGACCGCGAGTTCGC
CGAGGCCTATTTGGAGACCAAGAACCGCATGGAAGGACGCAACGTCCTGA
ACCCCGTCACCTTCTACCTGTACACCAACTCGAACCGCAACTCTCCCCAG
GAGATCAAGGCTACGTCAGCATCGATCTCTGGCTCGCACTTCAACCCCAA
CCACCCCACCCGCTTCACTATCCACGGCTGGTCCTCCAGCAAGGATGAGT
TCATCAACTACGGTGTCCGCGATGCCTGGTTCACCCACGGCGACATGAAC
ATGATTGCCGTCGACTGGGGACGTGCTCGTTCCGTGGACTACGCCTCCTC
CGTTCTGGCTGTTCCCGGAGTCGGCGAGCAGGTGGCTACCCTGATCAACT
TTATGCGCAGCAATCACGGCCTGAACCTGGACAACACCATGGTGATTGGT
CACAGCCTGGGCGCCCATGTCTCGGGCTATGCTGGCAAGAATGTGAAGAA
CGGCCAGCTGCACACCATCATTGGTCTGGACCCCGCCCTGCCCCTTTTCA
GCTACGATTCCCCCAACAAGCGCCTGAGCTCCACCGATGCTTACTACGTG
GAGTCCATCCAGACCAACGGAGGAACCCTGGGATTCCTGAAGCCCATCGG
CAAGGGAGCCTTCTACCCCAACGGAGGAAAGAGCCAGCCCGGATGTGGTG
TTGATCTCACCGGATCCTGCGCCCACAGCCGCTCAGTGATCTACTA
BO12340.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6295-PA | 1017 | CG6295-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
CG6277-PA | 1026 | CG6277-RA | 691..788 | 698..795 | 340 | 93.8 | Plus |
CG6271-PA | 1026 | CG6271-RA | 691..785 | 698..792 | 300 | 92.6 | Plus |
CG6283-PA | 1020 | CG6283-RA | 715..782 | 728..795 | 290 | 97 | Plus |
CG6277-PA | 1026 | CG6277-RA | 593..648 | 600..655 | 230 | 96.4 | Plus |
CG6271-PA | 1026 | CG6271-RA | 593..648 | 600..655 | 230 | 96.4 | Plus |
CG6283-PA | 1020 | CG6283-RA | 418..452 | 431..465 | 150 | 97.1 | Plus |
CG6277-PA | 1026 | CG6277-RA | 538..566 | 542..570 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6295-RA | 1091 | CG6295-RA | 26..855 | 17..846 | 4150 | 100 | Plus |
CG6277-RA | 1085 | CG6277-RA | 424..857 | 398..834 | 795 | 79.2 | Plus |
CG6271-RA | 1072 | CG6271-RA | 559..849 | 542..835 | 725 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27006135..27006922 | 846..59 | 3940 | 100 | Minus |
3R | 32079331 | 3R | 27022299..27022732 | 834..398 | 770 | 78.9 | Minus |
3R | 32079331 | 3R | 27025191..27025481 | 835..542 | 700 | 83.3 | Minus |
3R | 32079331 | 3R | 27020463..27020935 | 846..374 | 595 | 75.1 | Minus |
3R | 32079331 | 3R | 27006984..27007030 | 63..17 | 220 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:51:03 has no hits.
BO12340.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:02 Download gff for
BO12340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:39 Download gff for
BO12340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:48 Download gff for
BO12340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-RA | 26..854 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:21 Download gff for
BO12340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-RA | 26..854 | 17..845 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:21 Download gff for
BO12340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27006136..27006921 | 60..845 | 100 | <- | Minus |
3R | 27006988..27007030 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:48 Download gff for
BO12340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22831858..22832643 | 60..845 | 100 | <- | Minus |
arm_3R | 22832710..22832752 | 17..59 | 100 | | Minus |
BO12340.complete Sequence
1048 bp assembled on 2006-10-11
GenBank Submission: FJ632409
> BO12340.complete
GAAGTTATCAGTCGACATGATGAAACTGTTCCTGGCCTTGGCCTTTTGTG
TCCTGGCGGCTAATGCCGTGGAGGTTCGTGTGAATGGTGAGAACGGATGG
TATGTGCCCCAGGCCGATGGTACCATGGAGTGGATGGACCGCGAGTTCGC
CGAGGCCTATTTGGAGACCAAGAACCGCATGGAAGGACGCAACGTCCTGA
ACCCCGTCACCTTCTACCTGTACACCAACTCGAACCGCAACTCTCCCCAG
GAGATCAAGGCTACGTCAGCATCGATCTCTGGCTCGCACTTCAACCCCAA
CCACCCCACCCGCTTCACTATCCACGGCTGGTCCTCCAGCAAGGATGAGT
TCATCAACTACGGTGTCCGCGATGCCTGGTTCACCCACGGCGACATGAAC
ATGATTGCCGTCGACTGGGGACGTGCTCGTTCCGTGGACTACGCCTCCTC
CGTTCTGGCTGTTCCCGGAGTCGGCGAGCAGGTGGCTACCCTGATCAACT
TTATGCGCAGCAATCACGGCCTGAACCTGGACAACACCATGGTGATTGGT
CACAGCCTGGGCGCCCATGTCTCGGGCTATGCTGGCAAGAATGTGAAGAA
CGGCCAGCTGCACACCATCATTGGTCTGGACCCCGCCCTGCCCCTTTTCA
GCTACGATTCCCCCAACAAGCGCCTGAGCTCCACCGATGCTTACTACGTG
GAGTCCATCCAGACCAACGGAGGAACCCTGGGATTCCTGAAGCCCATCGG
CAAGGGAGCCTTCTACCCCAACGGAGGAAAGAGCCAGCCCGGATGTGGTG
TTGATCTCACCGGATCCTGCGCCCACAGCCGCTCAGTGATCTACTACGCC
GAGTCCGTGACCGAGAACAACTTCCCCACCATGCGCTGCGGCGACTACGA
GGAGGCTGTGGCCAAGGAGTGCGGTAGCTCCTACAGCTCCGTCCGCATGG
GAGCCACCACCAATGCCTACATGGTCGCTGGAGATTACTATGTACCCGTC
CGTAGCGATGCTCCCTACGGAATGGGCAACGCAAGCTTTCTAGACCAT
BO12340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6295-RA | 1017 | CG6295-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
CG6277-RA | 1026 | CG6277-PA | 394..1017 | 398..1024 | 1045 | 78.1 | Plus |
CG6271-RA | 1026 | CG6271-PA | 538..1017 | 542..1024 | 985 | 80.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6295-RA | 1091 | CG6295-RA | 26..1039 | 17..1030 | 5070 | 100 | Plus |
CG6277-RA | 1085 | CG6277-RA | 424..1047 | 398..1024 | 1045 | 78.1 | Plus |
CG6271-RA | 1072 | CG6271-RA | 559..1038 | 542..1024 | 985 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27005951..27006922 | 1030..59 | 4860 | 100 | Minus |
3R | 32079331 | 3R | 27022109..27022732 | 1024..398 | 1045 | 78.1 | Minus |
3R | 32079331 | 3R | 27025002..27025481 | 1024..542 | 985 | 80.7 | Minus |
3R | 32079331 | 3R | 27020310..27020935 | 999..374 | 805 | 75.2 | Minus |
3R | 32079331 | 3R | 27006984..27007030 | 63..17 | 220 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:58:35 has no hits.
BO12340.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:31 Download gff for
BO12340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-RA | 1..1017 | 17..1034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:01 Download gff for
BO12340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-RA | 26..1043 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:39 Download gff for
BO12340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-RA | 26..1039 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:31 Download gff for
BO12340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-RA | 26..1043 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:11 Download gff for
BO12340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6295-RA | 26..1039 | 17..1032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:11 Download gff for
BO12340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27005949..27006921 | 60..1032 | 99 | <- | Minus |
3R | 27006988..27007030 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:39 Download gff for
BO12340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22831671..22832643 | 60..1032 | 99 | <- | Minus |
arm_3R | 22832710..22832752 | 17..59 | 100 | | Minus |
BO12340.pep Sequence
Translation from 16 to 1048
> BO12340.pep
MMKLFLALAFCVLAANAVEVRVNGENGWYVPQADGTMEWMDREFAEAYLE
TKNRMEGRNVLNPVTFYLYTNSNRNSPQEIKATSASISGSHFNPNHPTRF
TIHGWSSSKDEFINYGVRDAWFTHGDMNMIAVDWGRARSVDYASSVLAVP
GVGEQVATLINFMRSNHGLNLDNTMVIGHSLGAHVSGYAGKNVKNGQLHT
IIGLDPALPLFSYDSPNKRLSSTDAYYVESIQTNGGTLGFLKPIGKGAFY
PNGGKSQPGCGVDLTGSCAHSRSVIYYAESVTENNFPTMRCGDYEEAVAK
ECGSSYSSVRMGATTNAYMVAGDYYVPVRSDAPYGMGNASFLDH
BO12340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6295-PA | 338 | CG6295-PA | 1..338 | 1..338 | 1806 | 100 | Plus |
CG6277-PA | 341 | CG6277-PA | 1..341 | 2..338 | 1219 | 66.7 | Plus |
CG6271-PA | 341 | CG6271-PA | 1..341 | 2..338 | 1202 | 66.1 | Plus |
CG6283-PA | 339 | CG6283-PA | 1..336 | 2..335 | 1161 | 63.7 | Plus |
CG17191-PA | 337 | CG17191-PA | 1..334 | 2..335 | 1064 | 58 | Plus |