Clone BO12340 Report

Search the DGRC for BO12340

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG6295-RA
Protein status:BO12340.pep: validated full length
Sequenced Size:1048

Clone Sequence Records

BO12340.3prime Sequence

711 bp (600 high quality bases) assembled on 2006-04-20

> BO12340.3prime
ATGGTCTAGAAAGCTTGCGTTGCCCATTCCGTAGGGAGCATCGCTACGGA
CGGGTACATAGTAATCTCCAGCGACCATGTAGGCATTGGTGGTGGCTCCC
ATGCGGACGGAGCTGTAGGAGCTACCGCACTCCTTGGCCACAGCCTCCTC
GTAGTCGCCGCAGCGCATGGTGGGGAAGTTGTTCTCGGTCACGGACTCGG
CGTAGTAGATCACTGAGCGGCTGTGGGCGCAGGATCCGGTGAGATCAACA
CCACATCCGGGCTGGCTCTTTCCTCCGTTGGGGTAGAAGGCTCCCTTGCC
GATGGGCTTCAGGAATCCCAGGGTTCCTCCGTTGGTCTGGATGGACTCCA
CGTAGTAAGCATCGGTGGAGCTCAGGCGCTTGTTGGGGGAATCGTAGCTG
AAAAGGGGCAGGGCGGGGTCCAGACCAATGATGGTGTGCAGCTGGCCGTT
CTTCACATTCTTGCCAGCATAGCCCGAGACATGGGCGCCCAGGCTGTGAC
CAATCACCATGGTGTTGTCCAGGTTCAGGCCGTGATTGCTGCGCATAAAG
TTGATCAGGGTAGCCACCTGCTCGCCGACTCCGGGAACAGCCAGAACGGA
GGAGGCGTAATCCACGGAACGAGCACGTCCCCAGTCGACGGCAATCATGT
TCATGTCGCCGTGGGTGAACCAGGAATTCGCGGACACCGTAGTTGATGAA
CTCATCCTTGC

BO12340.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6295-PA 1017 CG6295-RA 359..1014 674..19 3255 99.8 Minus
CG6277-PA 1026 CG6277-RA 691..788 351..254 340 93.8 Minus
CG6271-PA 1026 CG6271-RA 691..785 351..257 300 92.6 Minus
CG6283-PA 1020 CG6283-RA 715..782 321..254 290 97 Minus
CG6277-PA 1026 CG6277-RA 593..648 449..394 230 96.4 Minus
CG6271-PA 1026 CG6271-RA 593..648 449..394 230 96.4 Minus
CG6295-PA 1017 CG6295-RA 323..356 711..678 170 100 Minus
CG6277-PA 1026 CG6277-RA 538..566 507..479 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6295-RA 1091 CG6295-RA 348..1039 711..19 3410 99.6 Minus
CG6277-RA 1085 CG6277-RA 424..1047 651..25 1085 78.5 Minus
CG6271-RA 1072 CG6271-RA 559..1038 507..25 1010 80.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27005951..27006642 19..711 3385 99.6 Plus
3R 32079331 3R 27022109..27022732 25..651 1060 78.3 Plus
3R 32079331 3R 27025002..27025481 25..507 985 80.7 Plus
3R 32079331 3R 27020310..27020934 50..674 785 75 Plus
3R 32079331 3R 27018694..27019070 50..426 190 70 Plus
Blast to na_te.dros performed on 2015-02-08 13:17:47 has no hits.

BO12340.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:01 Download gff for BO12340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6295-PA 323..1017 15..711 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:38 Download gff for BO12340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6295-PA 323..1017 15..711 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:44:40 Download gff for BO12340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6295-RA 348..1043 14..711 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:17 Download gff for BO12340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6295-RA 348..1043 14..711 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:17 Download gff for BO12340.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27005947..27006642 14..711 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:44:40 Download gff for BO12340.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22831669..22832364 14..711 99   Plus

BO12340.5prime Sequence

846 bp (750 high quality bases) assembled on 2006-04-20

> BO12340.5prime
GAAGTTATCAGTCGACATGATGAAACTGTTCCTGGCCTTGGCCTTTTGTG
TCCTGGCGGCTAATGCCGTGGAGGTTCGTGTGAATGGTGAGAACGGATGG
TATGTGCCCCAGGCCGATGGTACCATGGAGTGGATGGACCGCGAGTTCGC
CGAGGCCTATTTGGAGACCAAGAACCGCATGGAAGGACGCAACGTCCTGA
ACCCCGTCACCTTCTACCTGTACACCAACTCGAACCGCAACTCTCCCCAG
GAGATCAAGGCTACGTCAGCATCGATCTCTGGCTCGCACTTCAACCCCAA
CCACCCCACCCGCTTCACTATCCACGGCTGGTCCTCCAGCAAGGATGAGT
TCATCAACTACGGTGTCCGCGATGCCTGGTTCACCCACGGCGACATGAAC
ATGATTGCCGTCGACTGGGGACGTGCTCGTTCCGTGGACTACGCCTCCTC
CGTTCTGGCTGTTCCCGGAGTCGGCGAGCAGGTGGCTACCCTGATCAACT
TTATGCGCAGCAATCACGGCCTGAACCTGGACAACACCATGGTGATTGGT
CACAGCCTGGGCGCCCATGTCTCGGGCTATGCTGGCAAGAATGTGAAGAA
CGGCCAGCTGCACACCATCATTGGTCTGGACCCCGCCCTGCCCCTTTTCA
GCTACGATTCCCCCAACAAGCGCCTGAGCTCCACCGATGCTTACTACGTG
GAGTCCATCCAGACCAACGGAGGAACCCTGGGATTCCTGAAGCCCATCGG
CAAGGGAGCCTTCTACCCCAACGGAGGAAAGAGCCAGCCCGGATGTGGTG
TTGATCTCACCGGATCCTGCGCCCACAGCCGCTCAGTGATCTACTA

BO12340.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6295-PA 1017 CG6295-RA 1..830 17..846 4150 100 Plus
CG6277-PA 1026 CG6277-RA 691..788 698..795 340 93.8 Plus
CG6271-PA 1026 CG6271-RA 691..785 698..792 300 92.6 Plus
CG6283-PA 1020 CG6283-RA 715..782 728..795 290 97 Plus
CG6277-PA 1026 CG6277-RA 593..648 600..655 230 96.4 Plus
CG6271-PA 1026 CG6271-RA 593..648 600..655 230 96.4 Plus
CG6283-PA 1020 CG6283-RA 418..452 431..465 150 97.1 Plus
CG6277-PA 1026 CG6277-RA 538..566 542..570 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6295-RA 1091 CG6295-RA 26..855 17..846 4150 100 Plus
CG6277-RA 1085 CG6277-RA 424..857 398..834 795 79.2 Plus
CG6271-RA 1072 CG6271-RA 559..849 542..835 725 83.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27006135..27006922 846..59 3940 100 Minus
3R 32079331 3R 27022299..27022732 834..398 770 78.9 Minus
3R 32079331 3R 27025191..27025481 835..542 700 83.3 Minus
3R 32079331 3R 27020463..27020935 846..374 595 75.1 Minus
3R 32079331 3R 27006984..27007030 63..17 220 97.9 Minus
Blast to na_te.dros performed on 2015-02-10 22:51:03 has no hits.

BO12340.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:02 Download gff for BO12340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6295-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:39 Download gff for BO12340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6295-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:48 Download gff for BO12340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6295-RA 26..854 17..845 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:21 Download gff for BO12340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6295-RA 26..854 17..845 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:21 Download gff for BO12340.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27006136..27006921 60..845 100 <- Minus
3R 27006988..27007030 17..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:48 Download gff for BO12340.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22831858..22832643 60..845 100 <- Minus
arm_3R 22832710..22832752 17..59 100   Minus

BO12340.complete Sequence

1048 bp assembled on 2006-10-11

GenBank Submission: FJ632409

> BO12340.complete
GAAGTTATCAGTCGACATGATGAAACTGTTCCTGGCCTTGGCCTTTTGTG
TCCTGGCGGCTAATGCCGTGGAGGTTCGTGTGAATGGTGAGAACGGATGG
TATGTGCCCCAGGCCGATGGTACCATGGAGTGGATGGACCGCGAGTTCGC
CGAGGCCTATTTGGAGACCAAGAACCGCATGGAAGGACGCAACGTCCTGA
ACCCCGTCACCTTCTACCTGTACACCAACTCGAACCGCAACTCTCCCCAG
GAGATCAAGGCTACGTCAGCATCGATCTCTGGCTCGCACTTCAACCCCAA
CCACCCCACCCGCTTCACTATCCACGGCTGGTCCTCCAGCAAGGATGAGT
TCATCAACTACGGTGTCCGCGATGCCTGGTTCACCCACGGCGACATGAAC
ATGATTGCCGTCGACTGGGGACGTGCTCGTTCCGTGGACTACGCCTCCTC
CGTTCTGGCTGTTCCCGGAGTCGGCGAGCAGGTGGCTACCCTGATCAACT
TTATGCGCAGCAATCACGGCCTGAACCTGGACAACACCATGGTGATTGGT
CACAGCCTGGGCGCCCATGTCTCGGGCTATGCTGGCAAGAATGTGAAGAA
CGGCCAGCTGCACACCATCATTGGTCTGGACCCCGCCCTGCCCCTTTTCA
GCTACGATTCCCCCAACAAGCGCCTGAGCTCCACCGATGCTTACTACGTG
GAGTCCATCCAGACCAACGGAGGAACCCTGGGATTCCTGAAGCCCATCGG
CAAGGGAGCCTTCTACCCCAACGGAGGAAAGAGCCAGCCCGGATGTGGTG
TTGATCTCACCGGATCCTGCGCCCACAGCCGCTCAGTGATCTACTACGCC
GAGTCCGTGACCGAGAACAACTTCCCCACCATGCGCTGCGGCGACTACGA
GGAGGCTGTGGCCAAGGAGTGCGGTAGCTCCTACAGCTCCGTCCGCATGG
GAGCCACCACCAATGCCTACATGGTCGCTGGAGATTACTATGTACCCGTC
CGTAGCGATGCTCCCTACGGAATGGGCAACGCAAGCTTTCTAGACCAT

BO12340.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6295-RA 1017 CG6295-PA 1..1014 17..1030 5070 100 Plus
CG6277-RA 1026 CG6277-PA 394..1017 398..1024 1045 78.1 Plus
CG6271-RA 1026 CG6271-PA 538..1017 542..1024 985 80.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6295-RA 1091 CG6295-RA 26..1039 17..1030 5070 100 Plus
CG6277-RA 1085 CG6277-RA 424..1047 398..1024 1045 78.1 Plus
CG6271-RA 1072 CG6271-RA 559..1038 542..1024 985 80.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27005951..27006922 1030..59 4860 100 Minus
3R 32079331 3R 27022109..27022732 1024..398 1045 78.1 Minus
3R 32079331 3R 27025002..27025481 1024..542 985 80.7 Minus
3R 32079331 3R 27020310..27020935 999..374 805 75.2 Minus
3R 32079331 3R 27006984..27007030 63..17 220 97.9 Minus
Blast to na_te.dros performed on 2014-11-28 00:58:35 has no hits.

BO12340.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:31 Download gff for BO12340.complete
Subject Subject Range Query Range Percent Splice Strand
CG6295-RA 1..1017 17..1034 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:01 Download gff for BO12340.complete
Subject Subject Range Query Range Percent Splice Strand
CG6295-RA 26..1043 17..1035 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:39 Download gff for BO12340.complete
Subject Subject Range Query Range Percent Splice Strand
CG6295-RA 26..1039 17..1032 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:31 Download gff for BO12340.complete
Subject Subject Range Query Range Percent Splice Strand
CG6295-RA 26..1043 17..1035 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:11 Download gff for BO12340.complete
Subject Subject Range Query Range Percent Splice Strand
CG6295-RA 26..1039 17..1032 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:11 Download gff for BO12340.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27005949..27006921 60..1032 99 <- Minus
3R 27006988..27007030 17..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:39 Download gff for BO12340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22831671..22832643 60..1032 99 <- Minus
arm_3R 22832710..22832752 17..59 100   Minus

BO12340.pep Sequence

Translation from 16 to 1048

> BO12340.pep
MMKLFLALAFCVLAANAVEVRVNGENGWYVPQADGTMEWMDREFAEAYLE
TKNRMEGRNVLNPVTFYLYTNSNRNSPQEIKATSASISGSHFNPNHPTRF
TIHGWSSSKDEFINYGVRDAWFTHGDMNMIAVDWGRARSVDYASSVLAVP
GVGEQVATLINFMRSNHGLNLDNTMVIGHSLGAHVSGYAGKNVKNGQLHT
IIGLDPALPLFSYDSPNKRLSSTDAYYVESIQTNGGTLGFLKPIGKGAFY
PNGGKSQPGCGVDLTGSCAHSRSVIYYAESVTENNFPTMRCGDYEEAVAK
ECGSSYSSVRMGATTNAYMVAGDYYVPVRSDAPYGMGNASFLDH

BO12340.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6295-PA 338 CG6295-PA 1..338 1..338 1806 100 Plus
CG6277-PA 341 CG6277-PA 1..341 2..338 1219 66.7 Plus
CG6271-PA 341 CG6271-PA 1..341 2..338 1202 66.1 Plus
CG6283-PA 339 CG6283-PA 1..336 2..335 1161 63.7 Plus
CG17191-PA 337 CG17191-PA 1..334 2..335 1064 58 Plus