Clone Sequence Records
BO12345.3prime Sequence
563 bp (562 high quality bases) assembled on 2006-04-20
> BO12345.3prime
ATGGTCTAGAAAGCTTGCTTTCCCTACTGCATTTCCCGTTTTGTGACCGT
TTGAATTAAATTTTTTCTTGCGCATTTTGGCAGGACCAACTTCCTCTGCT
GGGTTCATTATATTTTTCTCGATGTCCTCTTCGTCTAAGAGATCTTTATA
TAGATCCGGGATTATTGTTTCCTTCATGAACTGCGGCGTACGACCGGTAA
GCACCGACTGTCGCACATCGTCCTCTTTTTGTTCTAGCGTCTGTGTGGTG
GTGTGCAGCTTGCTCCGGATCTTGTAGTAGTTAGCAGTGCTGCGAAGCTT
GGCAGTAGCTTCCAAGAATTTCTCGTCTGCTTGACTAAGAGATGTGGAAA
TCATCTTCGGTAATTGGATGCGTTGCTTGTAGCTGCGCCCGAACAACGGA
TGTCGTTCTCGTAATAGGTACTTGGGTAGCGTTAGATCAGCTTGAATTGT
ATGTTCCTTCTGACCTGGTAGCGGTTGTTTATCATATAGACGCTTGCTGA
TTACCACATAGCCGACAAAGGGAATTTTCCGGAGGGCATAGGGACCCATG
TCGACTGATAACT
BO12345.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11076-PB | 534 | CG11076-RB | 1..531 | 549..19 | 2655 | 100 | Minus |
| CG11076-PA | 840 | CG11076-RA | 307..837 | 549..19 | 2655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11076-RE | 1230 | CG11076-RE | 437..967 | 549..19 | 2655 | 100 | Minus |
| CG11076-RD | 1192 | CG11076-RD | 399..929 | 549..19 | 2655 | 100 | Minus |
| CG11076-RA | 1265 | CG11076-RA | 472..1002 | 549..19 | 2655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1029974..1030504 | 19..549 | 2655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:53:28 has no hits.
BO12345.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:09 Download gff for
BO12345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-PB | 1..534 | 18..549 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:48 Download gff for
BO12345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-PA | 307..840 | 18..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:49:54 Download gff for
BO12345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-RB | 399..929 | 19..549 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:15 Download gff for
BO12345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-RA | 472..1002 | 19..549 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:15 Download gff for
BO12345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1029974..1030504 | 19..549 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:49:54 Download gff for
BO12345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1050600..1051130 | 19..549 | 100 | | Plus |
BO12345.5prime Sequence
563 bp (562 high quality bases) assembled on 2006-04-20
> BO12345.5prime
GAAGTTATCAGTCGACATGGGTCCCTATGCCCTCCGGAAAATTCCCTTTG
TCGGCTATGTGGTAATCAGCAAGCGTCTATATGATAAACAACCGCTACCA
GGTCAGAAGGAACATACAATTCAAGCTGATCTAACGCTACCCAAGTACCT
ATTACGAGAACGACATCCGTTGTTCGGGCGCAGCTACAAGCAACGCATCC
AATTACCGAAGATGATTTCCACATCTCTTAGTCAAGCAGACGAGAAATTC
TTGGAAGCTACTGCCAAGCTTCGCAGCACTGCTAACTACTACAAGATCCG
GAGCAAGCTGCACACCACCACACAGACGCTAGAACAAAAAGAGGACGATG
TGCGACAGTCGGTGCTTACCGGTCGTACGCCGCAGTTCATGAAGGAAACA
ATAATCCCGGATCTATATAAAGATCTCTTAGACGAAGAGGACATCGAGAA
AAATATAATGAACCCAGCAGAGGAAGTTGGTCCTGCCAAAATGCGCAAGA
AAAAATTTAATTCAAACGGTCACAAAACGGGAAATGCAGTAGGGAAAGCA
AGCTTTCTAGACC
BO12345.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11076-PB | 534 | CG11076-RB | 1..531 | 17..547 | 2655 | 100 | Plus |
| CG11076-PA | 840 | CG11076-RA | 307..837 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11076-RE | 1230 | CG11076-RE | 437..967 | 17..547 | 2655 | 100 | Plus |
| CG11076-RD | 1192 | CG11076-RD | 399..929 | 17..547 | 2655 | 100 | Plus |
| CG11076-RA | 1265 | CG11076-RA | 472..1002 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1029974..1030504 | 547..17 | 2655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:10:24 has no hits.
BO12345.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:10 Download gff for
BO12345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-PB | 1..534 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:50 Download gff for
BO12345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-PA | 307..840 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:52:57 Download gff for
BO12345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-RB | 399..929 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:39 Download gff for
BO12345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-RA | 472..1002 | 17..547 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:39 Download gff for
BO12345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1029974..1030504 | 17..547 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:52:57 Download gff for
BO12345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1050600..1051130 | 17..547 | 100 | | Minus |
BO12345.complete Sequence
565 bp assembled on 2006-10-11
GenBank Submission: FJ632410
> BO12345.complete
GAAGTTATCAGTCGACATGGGTCCCTATGCCCTCCGGAAAATTCCCTTTG
TCGGCTATGTGGTAATCAGCAAGCGTCTATATGATAAACAACCGCTACCA
GGTCAGAAGGAACATACAATTCAAGCTGATCTAACGCTACCCAAGTACCT
ATTACGAGAACGACATCCGTTGTTCGGGCGCAGCTACAAGCAACGCATCC
AATTACCGAAGATGATTTCCACATCTCTTAGTCAAGCAGACGAGAAATTC
TTGGAAGCTACTGCCAAGCTTCGCAGCACTGCTAACTACTACAAGATCCG
GAGCAAGCTGCACACCACCACACAGACGCTAGAACAAAAAGAGGACGATG
TGCGACAGTCGGTGCTTACCGGTCGTACGCCGCAGTTCATGAAGGAAACA
ATAATCCCGGATCTATATAAAGATCTCTTAGACGAAGAGGACATCGAGAA
AAATATAATGAACCCAGCAGAGGAAGTTGGTCCTGCCAAAATGCGCAAGA
AAAAATTTAATTCAAACGGTCACAAAACGGGAAATGCAGTAGGGAAAGCA
AGCTTTCTAGACCAT
BO12345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11076-RE | 783 | CG11076-PE | 250..780 | 17..547 | 2655 | 100 | Plus |
| CG11076-RD | 783 | CG11076-PD | 250..780 | 17..547 | 2655 | 100 | Plus |
| CG11076-RA | 840 | CG11076-PA | 307..837 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11076-RE | 1230 | CG11076-RE | 437..967 | 17..547 | 2655 | 100 | Plus |
| CG11076-RD | 1192 | CG11076-RD | 399..929 | 17..547 | 2655 | 100 | Plus |
| CG11076-RA | 1265 | CG11076-RA | 472..1002 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1029974..1030504 | 547..17 | 2655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:52:52 has no hits.
BO12345.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:00 Download gff for
BO12345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-RA | 307..840 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:05 Download gff for
BO12345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-RA | 468..998 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:25 Download gff for
BO12345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-RB | 399..929 | 17..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:00 Download gff for
BO12345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-RA | 468..998 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:44 Download gff for
BO12345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11076-RA | 472..1002 | 17..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:44 Download gff for
BO12345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1029972..1030504 | 17..549 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:25 Download gff for
BO12345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1050598..1051130 | 17..549 | 99 | | Minus |
BO12345.pep Sequence
Translation from 16 to 565
> BO12345.pep
MGPYALRKIPFVGYVVISKRLYDKQPLPGQKEHTIQADLTLPKYLLRERH
PLFGRSYKQRIQLPKMISTSLSQADEKFLEATAKLRSTANYYKIRSKLHT
TTQTLEQKEDDVRQSVLTGRTPQFMKETIIPDLYKDLLDEEDIEKNIMNP
AEEVGPAKMRKKKFNSNGHKTGNAVGKASFLDH
BO12345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11076-PE | 260 | CG11076-PE | 84..260 | 1..177 | 911 | 100 | Plus |
| CG11076-PD | 260 | CG11076-PD | 84..260 | 1..177 | 911 | 100 | Plus |
| CG11076-PA | 279 | CG11076-PA | 103..279 | 1..177 | 911 | 100 | Plus |
