Clone Sequence Records
BO12350.3prime Sequence
564 bp (470 high quality bases) assembled on 2006-04-20
> BO12350.3prime
ATGGTCTAGAAAGCTTGCTTTGCTGAATGCGTTGGCGACGGCATTGGCGT
TAGCATTAGCACTGCCACCTCGGGTGTTGGCATTGGCATTGGCGTTTGCA
TTGGCATTACCACCGCCAAATCCTCCGTCAGAGTTGGCGACAGCATTGGC
ATTGGCGTTAGCTTCGGAGTTACCACCGAATCCTCCTGGTCCTCCTGGTC
CTCCGAATCCTCCTGGACCTCCGAATCCACCCTGTCCTCCGAATCCACCC
TGTCCTCCGAATCCACCCTGTCCGCCGAATCCACCTTGTCCTTCAAAGCC
ACCTGGTCCTCCGAATCCACCTTGTCCTGGCCCTCCGAATCCACCCTGTC
CTCCGAATCCAGGGCCTCGTTCCCCGAATCCTCCTCCGAATCCGCCTTCC
TTCTGGAAACCAGGTCCGCTGAATCCTGGTCTTCCACCGCCCTCACTCTC
AGCATTTGCGTTGGCATTTGCGTTAGCATTGCCATTATTAAACTGCGGGG
CGGCACTGGACACGGCCAGGATTACGGTGAGAACGACAAAGACCTTCATG
TCGACTGATAACTT
BO12350.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7299-PA | 534 | CG7299-RA | 1..531 | 549..19 | 2580 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7299-RC | 983 | CG7299-RC | 37..568 | 550..19 | 2615 | 99.4 | Minus |
| CG7299-RA | 643 | CG7299-RA | 37..568 | 550..19 | 2615 | 99.4 | Minus |
| CG7299-RC | 983 | CG7299-RC | 265..389 | 385..252 | 220 | 79.1 | Minus |
| CG7299-RA | 643 | CG7299-RA | 265..389 | 385..252 | 220 | 79.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10683842..10684373 | 19..550 | 2615 | 99.4 | Plus |
| 2L | 23513712 | 2L | 10684021..10684115 | 234..328 | 310 | 88.4 | Plus |
| 2L | 23513712 | 2L | 10684057..10684151 | 198..292 | 295 | 87.4 | Plus |
| 2L | 23513712 | 2L | 10684021..10684096 | 252..327 | 215 | 85.5 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:54:38 has no hits.
BO12350.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:17 Download gff for
BO12350.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-PA | 1..534 | 15..549 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:00 Download gff for
BO12350.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-PA | 1..534 | 15..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:39 Download gff for
BO12350.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-RA | 29..573 | 13..557 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:50:29 Download gff for
BO12350.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-RA | 29..573 | 13..557 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:50:29 Download gff for
BO12350.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10683837..10684381 | 13..557 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:39 Download gff for
BO12350.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10683837..10684381 | 13..557 | 98 | | Plus |
BO12350.complete Sequence
565 bp assembled on 2010-07-02
GenBank Submission: KX797878
> BO12350.complete
GAAGTTATCAGTCGACATGAAGGTCTTTGTCGTTCTCGCCGTAATCCTGG
CCGTGTCCAGTGCCGCCCCGCAGTTTAATAATGGCAATGCTAACGCAAAT
GCCAACGCAAATGCTGAGAGTGAGGGCGGTGGAAGACCAGGATTCAGCGG
ACCTGGTTTCCAGAAGGAAGGCGGATTCGGAGGAGGATTCGGGGAACGAG
GCCCTGGATTCGGAGGACAGGGTGGATTCGGAGGGCCAGGACAAGGTGGA
TTCGGAGGACCAGGTGGCTTTGAAGGACAAGGTGGATTCGGCGGACAGGG
TGGATTCGGAGGACAGGGTGGATTCGGAGGACAGGGTGGATTCGGAGGAC
CAGGAGGATTCGGAGGACCAGGAGGACCAGGAGGATTCGGTGGTAACTCC
GAAGCTAACGCCAATGCCAATGCTGTCGCCAACTCTGACGGAGGATTTGG
CGGTGGTAATGCCAATGCAAACGCCAATGCCAATGCCAACACCCGAGGTG
GCAGTGCTAATGCTAACGCCAATGCCGTCGCCAACGCATTCCGCAAAGCA
AGCTTTCTAGACCAT
BO12350.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7299-RC | 534 | CG7299-PC | 1..531 | 17..547 | 2655 | 100 | Plus |
| CG7299-RA | 534 | CG7299-PA | 1..531 | 17..547 | 2655 | 100 | Plus |
| CG7299-RC | 534 | CG7299-PC | 222..316 | 274..368 | 310 | 88.4 | Plus |
| CG7299-RC | 534 | CG7299-PC | 258..352 | 238..332 | 310 | 88.4 | Plus |
| CG7299-RA | 534 | CG7299-PA | 222..316 | 274..368 | 310 | 88.4 | Plus |
| CG7299-RA | 534 | CG7299-PA | 258..352 | 238..332 | 310 | 88.4 | Plus |
| CG7299-RC | 534 | CG7299-PC | 277..352 | 239..314 | 215 | 85.5 | Plus |
| CG7299-RA | 534 | CG7299-PA | 277..352 | 239..314 | 215 | 85.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7299-RC | 983 | CG7299-RC | 37..568 | 16..547 | 2660 | 100 | Plus |
| CG7299-RA | 643 | CG7299-RA | 37..568 | 16..547 | 2660 | 100 | Plus |
| CG7299-RC | 983 | CG7299-RC | 259..353 | 274..368 | 310 | 88.4 | Plus |
| CG7299-RC | 983 | CG7299-RC | 295..389 | 238..332 | 310 | 88.4 | Plus |
| CG7299-RA | 643 | CG7299-RA | 259..353 | 274..368 | 310 | 88.4 | Plus |
| CG7299-RA | 643 | CG7299-RA | 295..389 | 238..332 | 310 | 88.4 | Plus |
| CG7299-RC | 983 | CG7299-RC | 314..389 | 239..314 | 215 | 85.5 | Plus |
| CG7299-RA | 643 | CG7299-RA | 314..389 | 239..314 | 215 | 85.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10683842..10684373 | 547..16 | 2660 | 100 | Minus |
| 2L | 23513712 | 2L | 10684021..10684115 | 332..238 | 310 | 88.4 | Minus |
| 2L | 23513712 | 2L | 10684057..10684151 | 368..274 | 310 | 88.4 | Minus |
| 2L | 23513712 | 2L | 10684021..10684096 | 314..239 | 215 | 85.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:20:04 has no hits.
BO12350.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:47 Download gff for
BO12350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-RA | 36..566 | 17..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:50 Download gff for
BO12350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-RA | 38..568 | 17..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:00 Download gff for
BO12350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-RA | 38..568 | 17..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:00 Download gff for
BO12350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10683840..10684372 | 17..549 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:50 Download gff for
BO12350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10683840..10684372 | 17..549 | 99 | | Minus |
BO12350.pep Sequence
Translation from 16 to 565
> BO12350.pep
MKVFVVLAVILAVSSAAPQFNNGNANANANANAESEGGGRPGFSGPGFQK
EGGFGGGFGERGPGFGGQGGFGGPGQGGFGGPGGFEGQGGFGGQGGFGGQ
GGFGGQGGFGGPGGFGGPGGPGGFGGNSEANANANAVANSDGGFGGGNAN
ANANANANTRGGSANANANAVANAFRKASFLDH
BO12350.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7299-PC | 177 | CG7299-PC | 1..177 | 1..177 | 964 | 100 | Plus |
| CG7299-PA | 177 | CG7299-PA | 1..177 | 1..177 | 964 | 100 | Plus |
| CG7296-PB | 161 | CG7296-PB | 1..158 | 1..161 | 401 | 56 | Plus |
| CG7296-PA | 161 | CG7296-PA | 1..158 | 1..161 | 401 | 56 | Plus |
| CG8157-PB | 113 | CG8157-PB | 1..100 | 1..125 | 277 | 51.9 | Plus |
| CG7296-PB | 161 | CG7296-PB | 18..154 | 63..174 | 223 | 44 | Plus |
| CG7296-PA | 161 | CG7296-PA | 18..154 | 63..174 | 223 | 44 | Plus |
