Clone Sequence Records
BO12351.3prime Sequence
641 bp (640 high quality bases) assembled on 2006-04-20
> BO12351.3prime
ATGGTCTAGAAAGCTTGCCTTTGAGTTGCCCGCCACGGAACCGGGTCCGG
AACCCGCCAGATCATTCACCCGCTGGTAGCGCGGTTTATTGCGGGTAAAC
GGCAAGTACTTGTACTTGATCATATGCTTGATCTGGCGCTTCATCGTGAT
GCAGAAGAGCGTGATAAAGTACATGACCAGGATGGGCCAGAATACCGGCA
CGTTGAAGAAATCGAAGAATGTACAAATCAGACCGATGAGCGTGCTCTTC
GCCACCGACAGCCAGAACTTGAACTCCGGCAGGCGGCGAATGAATGGCCG
GAACTCTTCGTTGCTGCGAGTTGGCAGATTGGGTCCCTCGTCCTCGTCAT
CCTGCGAATACGGATCGAACTCCGGGTCGATCTTGGGCGTTAAAAAAGCG
ATAAACAGGTTCAAGTGGTAAATGCCAAGCGCATAGCACACGATGTACCA
GCCCTGATAGATGAAGATGCGCAGCACAAAGAGCAGGAGCAGAAAGCCGG
CGAACACCCAGCGCATTCGTGTGTGCGGTGTGCTACGGTCCAAGGCGGAT
TGGTAGGTCTGTGAGAGGCGCTGAAAGAACTTCTTAACCCCGCCGCCGCC
GGCAGCACTGCTGTCCTCGTTCATCATGTCGACTGATAACT
BO12351.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-PA | 612 | CG11857-RA | 1..609 | 627..19 | 3020 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-RA | 1801 | CG11857-RA | 466..1075 | 628..19 | 3035 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25259491..25260033 | 561..19 | 2700 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25259363..25259432 | 628..559 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:47:29 has no hits.
BO12351.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:18 Download gff for
BO12351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-PA | 1..612 | 16..627 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:02 Download gff for
BO12351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-PA | 1..612 | 16..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:48:35 Download gff for
BO12351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 462..1083 | 11..631 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:10 Download gff for
BO12351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 462..1083 | 11..631 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:10 Download gff for
BO12351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25259359..25259432 | 559..631 | 98 | -> | Minus |
| 3R | 25259494..25260041 | 11..558 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:48:35 Download gff for
BO12351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21085081..21085154 | 559..631 | 98 | -> | Minus |
| arm_3R | 21085216..21085763 | 11..558 | 99 | | Minus |
BO12351.5prime Sequence
641 bp (640 high quality bases) assembled on 2006-04-20
> BO12351.5prime
GAAGTTATCAGTCGACATGATGAACGAGGACAGCAGTGCTGCCGGCGGCG
GCGGGGTTAAGAAGTTCTTTCAGCGCCTCTCACAGACCTACCAATCCGCC
TTGGACCGTAGCACACCGCACACACGAATGCGCTGGGTGTTCGCCGGCTT
TCTGCTCCTGCTCTTTGTGCTGCGCATCTTCATCTATCAGGGCTGGTACA
TCGTGTGCTATGCGCTTGGCATTTACCACTTGAACCTGTTTATCGCTTTT
TTAACGCCCAAGATCGACCCGGAGTTCGATCCGTATTCGCAGGATGACGA
GGACGAGGGACCCAATCTGCCAACTCGCAGCAACGAAGAGTTCCGGCCAT
TCATTCGCCGCCTGCCGGAGTTCAAGTTCTGGCTGTCGGTGGCGAAGAGC
ACGCTCATCGGTCTGATTTGTACATTCTTCGATTTCTTCAACGTGCCGGT
ATTCTGGCCCATCCTGGTCATGTACTTTATCACGCTCTTCTGCATCACGA
TGAAGCGCCAGATCAAGCATATGATCAAGTACAAGTACTTGCCGTTTACC
CGCAATAAACCGCGCTACCAGCGGGTGAATGATCTGGCGGGTTCCGGACC
CGGTTCCGTGGCGGGCAACTCAAAGGCAAGCTTTCTAGACC
BO12351.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-PA | 612 | CG11857-RA | 1..609 | 17..625 | 3020 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-RA | 1801 | CG11857-RA | 466..1075 | 16..625 | 3035 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25259491..25260033 | 83..625 | 2700 | 99.8 | Plus |
| 3R | 32079331 | 3R | 25259363..25259432 | 16..85 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:21:51 has no hits.
BO12351.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:19 Download gff for
BO12351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-PA | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:03 Download gff for
BO12351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-PA | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:22:37 Download gff for
BO12351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 462..1083 | 13..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:48 Download gff for
BO12351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 462..1083 | 13..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:48 Download gff for
BO12351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25259494..25260041 | 86..633 | 99 | | Plus |
| 3R | 25259359..25259432 | 13..85 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:22:37 Download gff for
BO12351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21085081..21085154 | 13..85 | 98 | -> | Plus |
| arm_3R | 21085216..21085763 | 86..633 | 99 | | Plus |
BO12351.complete Sequence
643 bp assembled on 2006-10-11
GenBank Submission: FJ632411
> BO12351.complete
GAAGTTATCAGTCGACATGATGAACGAGGACAGCAGTGCTGCCGGCGGCG
GCGGGGTTAAGAAGTTCTTTCAGCGCCTCTCACAGACCTACCAATCCGCC
TTGGACCGTAGCACACCGCACACACGAATGCGCTGGGTGTTCGCCGGCTT
TCTGCTCCTGCTCTTTGTGCTGCGCATCTTCATCTATCAGGGCTGGTACA
TCGTGTGCTATGCGCTTGGCATTTACCACTTGAACCTGTTTATCGCTTTT
TTAACGCCCAAGATCGACCCGGAGTTCGATCCGTATTCGCAGGATGACGA
GGACGAGGGACCCAATCTGCCAACTCGCAGCAACGAAGAGTTCCGGCCAT
TCATTCGCCGCCTGCCGGAGTTCAAGTTCTGGCTGTCGGTGGCGAAGAGC
ACGCTCATCGGTCTGATTTGTACATTCTTCGATTTCTTCAACGTGCCGGT
ATTCTGGCCCATCCTGGTCATGTACTTTATCACGCTCTTCTGCATCACGA
TGAAGCGCCAGATCAAGCATATGATCAAGTACAAGTACTTGCCGTTTACC
CGCAATAAACCGCGCTACCAGCGGGTGAATGATCTGGCGGGTTCCGGACC
CGGTTCCGTGGCGGGCAACTCAAAGGCAAGCTTTCTAGACCAT
BO12351.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-RA | 612 | CG11857-PA | 1..609 | 17..625 | 3030 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-RA | 1801 | CG11857-RA | 466..1075 | 16..625 | 3035 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25259491..25260033 | 83..625 | 2700 | 99.8 | Plus |
| 3R | 32079331 | 3R | 25259363..25259432 | 16..85 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:50:19 has no hits.
BO12351.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:34 Download gff for
BO12351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:02:03 Download gff for
BO12351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 463..1084 | 13..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:37 Download gff for
BO12351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 467..1075 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:34 Download gff for
BO12351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 463..1084 | 13..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:50 Download gff for
BO12351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11857-RA | 467..1075 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:50 Download gff for
BO12351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25259364..25259432 | 17..85 | 100 | -> | Plus |
| 3R | 25259494..25260033 | 86..627 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:37 Download gff for
BO12351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21085086..21085154 | 17..85 | 100 | -> | Plus |
| arm_3R | 21085216..21085755 | 86..627 | 99 | | Plus |
BO12351.pep Sequence
Translation from 16 to 643
> BO12351.pep
MMNEDSSAAGGGGVKKFFQRLSQTYQSALDRSTPHTRMRWVFAGFLLLLF
VLRIFIYQGWYIVCYALGIYHLNLFIAFLTPKIDPEFDPYSQDDEDEGPN
LPTRSNEEFRPFIRRLPEFKFWLSVAKSTLIGLICTFFDFFNVPVFWPIL
VMYFITLFCITMKRQIKHMIKYKYLPFTRNKPRYQRVNDLAGSGPGSVAG
NSKASFLDH
BO12351.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11857-PA | 203 | CG11857-PA | 1..203 | 1..203 | 1092 | 100 | Plus |
