Clone BO12355 Report

Search the DGRC for BO12355

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:55
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO12355.pep: validated full length
Sequenced Size:946

Clone Sequence Records

BO12355.3prime Sequence

654 bp (594 high quality bases) assembled on 2006-04-20

> BO12355.3prime
ATGGTCTAGAAAGCTTGCACGGCCAGGCGGCTTAGCCTTGCCTTGTTTGC
GTGCATGCCGCGTGGCATTGCGCACAATAAGTGGAAAGATGTTGTTGTCC
GCCGGAGCACGATAATCTCGATAATAGAGCAGGTATGGCGATTTGTTATT
CACGAAAGGCGGTGGAATACCGCCGCCGGTATTCGAAACGATCGCCACAT
CCGCACAATTGCGGAATGTCTCTGCCTTGCCGCAGCCAACGGCTTCGGTG
CCATTGGCACAGGTGCCCCACATATTGGCCGTATAGTAGGTCCATTGGAG
TACGCACTGTGTGCAGGTGACATATGGCGGCAAACGTACCTTGTATCGGA
ATATATCCTTCTTTTTCGCATCACGCGGTATCAGATACCGATGCTCTCGA
CTGCCCGAAATGAGCAACGGATAACGATCGAAGCACTGCTGTGTCGCCTC
CTGTCGCGGATTGTTGTTCGGACAGAGGAACATCTCGAAACGGCCATAAT
GATTGGCAGTCAGTTCCACCTCAACATCGATCGTCTGACCGGCGGTATAG
TAGCGTGAGATGATGCCCTTGGCGTATTGACCACCAGCCTCGTGCGGCCT
GGGCGATTTGACGTGGTAGGCATCGCCGCAGATTCCGCAACGTCCCTTAT
TTTG

BO12355.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15786-PA 858 CG15786-RA 220..855 654..19 3155 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-RB 1407 CG42749-RB 500..1135 654..19 3165 99.8 Minus
CG42749-RC 1412 CG42749-RC 500..1083 654..71 2905 99.8 Minus
CG42749-RD 1488 CG42749-RD 576..1159 654..71 2905 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5301627..5302059 654..222 2150 99.8 Minus
X 23542271 X 5302118..5302271 224..71 770 100 Minus
X 23542271 X 5302570..5302622 71..19 265 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:36:08 has no hits.

BO12355.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:26 Download gff for BO12355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15786-PA 220..858 15..654 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:15 Download gff for BO12355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15786-PA 220..858 15..654 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:20:25 Download gff for BO12355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 500..1138 15..654 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:32 Download gff for BO12355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 500..1138 15..654 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:32 Download gff for BO12355.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5301627..5302059 222..654 99 -> Minus
X 5302121..5302271 71..221 100 -> Minus
X 5302571..5302625 15..70 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:20:25 Download gff for BO12355.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5195660..5196092 222..654 99 -> Minus
arm_X 5196154..5196304 71..221 100 -> Minus
arm_X 5196604..5196658 15..70 96   Minus

BO12355.5prime Sequence

895 bp (821 high quality bases) assembled on 2006-04-20

> BO12355.5prime
GAAGTTATCAGTCGACATGCAGCGTAAATTACACAAAAATATTCAGGCAA
CTGGACATCTGAGGCAATCTGGCATGGCGATGCGACACTTGACAGCTGCC
ACAATGGGCGTATTGCTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGAT
GCAATTGATGGCATCGGTGCGTGGACATGGTCGACTAATGGATCCACCGG
CCAGGAATGCCATGTGGCGTTTTGGCTATCCCAATCCGGTGAACTACAAT
GACAATGAGCTCTTCTGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAA
GGGACGTTGCGGTATCTGCGGCGATGCCTACCACGTCAAATCGCCCAGGC
CGCACGAGGCTGGTGGTCAATACGCCAAGGGCATCATCTCACGCTACTAT
ACCGCCGGTCAGACGATCGATGTTGAGGTGGAACTGACTGCCAATCATTA
TGGCCGTTTCGAGATGTTCCTCTGTCCGAACAACAATCCGCGACAGGAGG
CGACACAGCAGTGCTTCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGA
GAGCATCGGTATCTGATACCGCGTGATGCGAAAAAGAAGGATATATTCCG
ATACAAGGTACGTTTGCCGCCATATGTCACCTGCACACAGTGCGTACTCC
AATGGACCTACTATACGGCCAATATGTGGGGCACCTGTGCCAATGGCACC
GAAGCCGTTGGCTGCGGCAAGGCAGAGACATTCCGCAATTGTGCGGATGT
GGCGATCGTTTCGAATACCGGCGGCGGTATTCCACCGCCTTTCGTGAATA
ACAAATCGCCATACCTGCTCTATTATCGAGATTATCGTGCTCCGGCGGGA
CACAACATCTTTCCACTTATTGTGCGCAATGCCACGCGGCATGCA

BO12355.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15786-PA 858 CG15786-RA 1..775 74..848 3875 100 Plus
CG15786-PA 858 CG15786-RA 779..822 852..895 220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-RB 1407 CG42749-RB 225..1102 18..895 4345 99.8 Plus
CG42749-RC 1412 CG42749-RC 225..1083 18..876 4250 99.8 Plus
CG42749-RD 1488 CG42749-RD 301..1159 18..876 4250 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5301464..5302059 130..725 2980 100 Plus
X 23542271 X 5302118..5302271 723..876 725 98.1 Plus
X 23542271 X 5301319..5301404 45..130 430 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:32:32 has no hits.

BO12355.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:26 Download gff for BO12355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15786-PA 1..821 74..894 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:16 Download gff for BO12355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15786-PA 1..821 74..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:10 Download gff for BO12355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 216..1101 10..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:33 Download gff for BO12355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 216..1101 10..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:33 Download gff for BO12355.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5301321..5301404 47..130 100 -> Plus
X 5301465..5302059 131..725 100 -> Plus
X 5302121..5302271 726..876 98 -> Plus
X 5302571..5302588 877..894 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:10 Download gff for BO12355.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5195354..5195437 47..130 100 -> Plus
arm_X 5195498..5196092 131..725 100 -> Plus
arm_X 5196154..5196304 726..876 98 -> Plus
arm_X 5196604..5196621 877..894 100   Plus

BO12355.complete Sequence

946 bp assembled on 2006-10-11

GenBank Submission: FJ632412

> BO12355.complete
GAAGTTATCAGTCGACATGCAGCGTAAATTACACAAAAATATTCAGGCAA
CTGGACATCTGAGGCAATCTGGCATGGCGATGCGACACTTGACAGCTGCC
ACAATGGGCGTATTGCTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGAT
GCAATTGATGGCATCGGTGCGTGGACATGGTCGACTAATGGATCCACCGG
CCAGGAATGCCATGTGGCGTTTTGGCTATCCCAATCCGGTGAACTACAAT
GACAATGAGCTCTTCTGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAA
GGGACGTTGCGGTATCTGCGGCGATGCCTACCACGTCAAATCGCCCAGGC
CGCACGAGGCTGGTGGTCAATACGCCAAGGGCATCATCTCACGCTACTAT
ACCGCCGGTCAGACGATCGATGTTGAGGTGGAACTGACTGCCAATCATTA
TGGCCGTTTCGAGATGTTCCTCTGTCCGAACAACAATCCGCGACAGGAGG
CGACACAGCAGTGCTTCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGA
GAGCATCGGTATCTGATACCGCGTGATGCGAAAAAGAAGGATATATTCCG
ATACAAGGTACGTTTGCCGCCATATGTCACCTGCACACAGTGCGTACTCC
AATGGACCTACTATACGGCCAATATGTGGGGCACCTGTGCCAATGGCACC
GAAGCCGTTGGCTGCGGCAAGGCAGAGACATTCCGCAATTGTGCGGATGT
GGCGATCGTTTCGAATACCGGCGGCGGTATTCCACCGCCTTTCGTGAATA
ACAAATCGCCATACCTGCTCTATTATCGAGATTATCGTGCTCCGGCGGAC
AACAACATCTTTCCACTTATTGTGCGCAATGCCACGCGGCATGCACGCAA
ACAAGGCAAGGCTAAGCCGCCTGGCCGTGCAAGCTTTCTAGACCAT

BO12355.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-RB 858 CG42749-PB 1..855 74..928 4275 100 Plus
CG42749-RC 1038 CG42749-PC 1..803 74..876 4015 100 Plus
CG42749-RD 1038 CG42749-PD 1..803 74..876 4015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-RB 1407 CG42749-RB 225..1135 18..928 4555 100 Plus
CG42749-RC 1412 CG42749-RC 225..1083 18..876 4295 100 Plus
CG42749-RD 1488 CG42749-RD 301..1159 18..876 4295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5301464..5302059 130..725 2980 100 Plus
X 23542271 X 5302118..5302271 723..876 770 100 Plus
X 23542271 X 5301319..5301404 45..130 430 100 Plus
X 23542271 X 5302570..5302622 876..928 265 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:41:11 has no hits.

BO12355.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:14 Download gff for BO12355.complete
Subject Subject Range Query Range Percent Splice Strand
CG15786-RA 1..858 74..932 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:37 Download gff for BO12355.complete
Subject Subject Range Query Range Percent Splice Strand
CG15786-RA 201..1123 10..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:16 Download gff for BO12355.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 223..1135 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:15 Download gff for BO12355.complete
Subject Subject Range Query Range Percent Splice Strand
CG15786-RA 201..1123 10..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:18 Download gff for BO12355.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 223..1135 17..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:18 Download gff for BO12355.complete
Subject Subject Range Query Range Percent Splice Strand
X 5296364..5296394 17..46 96 -> Plus
X 5301321..5301404 47..130 100 -> Plus
X 5301465..5302059 131..725 100 -> Plus
X 5302121..5302271 726..876 100 -> Plus
X 5302571..5302622 877..930 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:16 Download gff for BO12355.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5190397..5190427 17..46 96 -> Plus
arm_X 5195354..5195437 47..130 100 -> Plus
arm_X 5195498..5196092 131..725 100 -> Plus
arm_X 5196154..5196304 726..876 100 -> Plus
arm_X 5196604..5196655 877..930 96   Plus

BO12355.pep Sequence

Translation from 16 to 946

> BO12355.pep
MQRKLHKNIQATGHLRQSGMAMRHLTAATMGVLLPVGVLGFVVLMQLMAS
VRGHGRLMDPPARNAMWRFGYPNPVNYNDNELFCGGYAVQWEQNKGRCGI
CGDAYHVKSPRPHEAGGQYAKGIISRYYTAGQTIDVEVELTANHYGRFEM
FLCPNNNPRQEATQQCFDRYPLLISGSREHRYLIPRDAKKKDIFRYKVRL
PPYVTCTQCVLQWTYYTANMWGTCANGTEAVGCGKAETFRNCADVAIVSN
TGGGIPPPFVNNKSPYLLYYRDYRAPADNNIFPLIVRNATRHARKQGKAK
PPGRASFLDH

BO12355.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-PB 285 CG15786-PA 1..285 20..304 1573 100 Plus
CG42749-PC 345 CG42749-PC 1..269 20..288 1482 99.6 Plus
CG42749-PD 345 CG42749-PD 1..269 20..288 1482 99.6 Plus
CG42598-PB 340 CG42598-PB 1..226 25..249 489 41.6 Plus
CG41284-PC 340 CG41284-PC 1..226 25..249 481 41.1 Plus