Clone Sequence Records
BO12355.3prime Sequence
654 bp (594 high quality bases) assembled on 2006-04-20
> BO12355.3prime
ATGGTCTAGAAAGCTTGCACGGCCAGGCGGCTTAGCCTTGCCTTGTTTGC
GTGCATGCCGCGTGGCATTGCGCACAATAAGTGGAAAGATGTTGTTGTCC
GCCGGAGCACGATAATCTCGATAATAGAGCAGGTATGGCGATTTGTTATT
CACGAAAGGCGGTGGAATACCGCCGCCGGTATTCGAAACGATCGCCACAT
CCGCACAATTGCGGAATGTCTCTGCCTTGCCGCAGCCAACGGCTTCGGTG
CCATTGGCACAGGTGCCCCACATATTGGCCGTATAGTAGGTCCATTGGAG
TACGCACTGTGTGCAGGTGACATATGGCGGCAAACGTACCTTGTATCGGA
ATATATCCTTCTTTTTCGCATCACGCGGTATCAGATACCGATGCTCTCGA
CTGCCCGAAATGAGCAACGGATAACGATCGAAGCACTGCTGTGTCGCCTC
CTGTCGCGGATTGTTGTTCGGACAGAGGAACATCTCGAAACGGCCATAAT
GATTGGCAGTCAGTTCCACCTCAACATCGATCGTCTGACCGGCGGTATAG
TAGCGTGAGATGATGCCCTTGGCGTATTGACCACCAGCCTCGTGCGGCCT
GGGCGATTTGACGTGGTAGGCATCGCCGCAGATTCCGCAACGTCCCTTAT
TTTG
BO12355.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15786-PA | 858 | CG15786-RA | 220..855 | 654..19 | 3155 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42749-RB | 1407 | CG42749-RB | 500..1135 | 654..19 | 3165 | 99.8 | Minus |
CG42749-RC | 1412 | CG42749-RC | 500..1083 | 654..71 | 2905 | 99.8 | Minus |
CG42749-RD | 1488 | CG42749-RD | 576..1159 | 654..71 | 2905 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5301627..5302059 | 654..222 | 2150 | 99.8 | Minus |
X | 23542271 | X | 5302118..5302271 | 224..71 | 770 | 100 | Minus |
X | 23542271 | X | 5302570..5302622 | 71..19 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:36:08 has no hits.
BO12355.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:26 Download gff for
BO12355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15786-PA | 220..858 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:15 Download gff for
BO12355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15786-PA | 220..858 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:20:25 Download gff for
BO12355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42749-RB | 500..1138 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:32 Download gff for
BO12355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42749-RB | 500..1138 | 15..654 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:32 Download gff for
BO12355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5301627..5302059 | 222..654 | 99 | -> | Minus |
X | 5302121..5302271 | 71..221 | 100 | -> | Minus |
X | 5302571..5302625 | 15..70 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:20:25 Download gff for
BO12355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5195660..5196092 | 222..654 | 99 | -> | Minus |
arm_X | 5196154..5196304 | 71..221 | 100 | -> | Minus |
arm_X | 5196604..5196658 | 15..70 | 96 | | Minus |
BO12355.5prime Sequence
895 bp (821 high quality bases) assembled on 2006-04-20
> BO12355.5prime
GAAGTTATCAGTCGACATGCAGCGTAAATTACACAAAAATATTCAGGCAA
CTGGACATCTGAGGCAATCTGGCATGGCGATGCGACACTTGACAGCTGCC
ACAATGGGCGTATTGCTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGAT
GCAATTGATGGCATCGGTGCGTGGACATGGTCGACTAATGGATCCACCGG
CCAGGAATGCCATGTGGCGTTTTGGCTATCCCAATCCGGTGAACTACAAT
GACAATGAGCTCTTCTGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAA
GGGACGTTGCGGTATCTGCGGCGATGCCTACCACGTCAAATCGCCCAGGC
CGCACGAGGCTGGTGGTCAATACGCCAAGGGCATCATCTCACGCTACTAT
ACCGCCGGTCAGACGATCGATGTTGAGGTGGAACTGACTGCCAATCATTA
TGGCCGTTTCGAGATGTTCCTCTGTCCGAACAACAATCCGCGACAGGAGG
CGACACAGCAGTGCTTCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGA
GAGCATCGGTATCTGATACCGCGTGATGCGAAAAAGAAGGATATATTCCG
ATACAAGGTACGTTTGCCGCCATATGTCACCTGCACACAGTGCGTACTCC
AATGGACCTACTATACGGCCAATATGTGGGGCACCTGTGCCAATGGCACC
GAAGCCGTTGGCTGCGGCAAGGCAGAGACATTCCGCAATTGTGCGGATGT
GGCGATCGTTTCGAATACCGGCGGCGGTATTCCACCGCCTTTCGTGAATA
ACAAATCGCCATACCTGCTCTATTATCGAGATTATCGTGCTCCGGCGGGA
CACAACATCTTTCCACTTATTGTGCGCAATGCCACGCGGCATGCA
BO12355.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15786-PA | 858 | CG15786-RA | 1..775 | 74..848 | 3875 | 100 | Plus |
CG15786-PA | 858 | CG15786-RA | 779..822 | 852..895 | 220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42749-RB | 1407 | CG42749-RB | 225..1102 | 18..895 | 4345 | 99.8 | Plus |
CG42749-RC | 1412 | CG42749-RC | 225..1083 | 18..876 | 4250 | 99.8 | Plus |
CG42749-RD | 1488 | CG42749-RD | 301..1159 | 18..876 | 4250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5301464..5302059 | 130..725 | 2980 | 100 | Plus |
X | 23542271 | X | 5302118..5302271 | 723..876 | 725 | 98.1 | Plus |
X | 23542271 | X | 5301319..5301404 | 45..130 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:32:32 has no hits.
BO12355.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:26 Download gff for
BO12355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15786-PA | 1..821 | 74..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:16 Download gff for
BO12355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15786-PA | 1..821 | 74..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:10 Download gff for
BO12355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42749-RB | 216..1101 | 10..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:33 Download gff for
BO12355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42749-RB | 216..1101 | 10..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:33 Download gff for
BO12355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5301321..5301404 | 47..130 | 100 | -> | Plus |
X | 5301465..5302059 | 131..725 | 100 | -> | Plus |
X | 5302121..5302271 | 726..876 | 98 | -> | Plus |
X | 5302571..5302588 | 877..894 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:10 Download gff for
BO12355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5195354..5195437 | 47..130 | 100 | -> | Plus |
arm_X | 5195498..5196092 | 131..725 | 100 | -> | Plus |
arm_X | 5196154..5196304 | 726..876 | 98 | -> | Plus |
arm_X | 5196604..5196621 | 877..894 | 100 | | Plus |
BO12355.complete Sequence
946 bp assembled on 2006-10-11
GenBank Submission: FJ632412
> BO12355.complete
GAAGTTATCAGTCGACATGCAGCGTAAATTACACAAAAATATTCAGGCAA
CTGGACATCTGAGGCAATCTGGCATGGCGATGCGACACTTGACAGCTGCC
ACAATGGGCGTATTGCTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGAT
GCAATTGATGGCATCGGTGCGTGGACATGGTCGACTAATGGATCCACCGG
CCAGGAATGCCATGTGGCGTTTTGGCTATCCCAATCCGGTGAACTACAAT
GACAATGAGCTCTTCTGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAA
GGGACGTTGCGGTATCTGCGGCGATGCCTACCACGTCAAATCGCCCAGGC
CGCACGAGGCTGGTGGTCAATACGCCAAGGGCATCATCTCACGCTACTAT
ACCGCCGGTCAGACGATCGATGTTGAGGTGGAACTGACTGCCAATCATTA
TGGCCGTTTCGAGATGTTCCTCTGTCCGAACAACAATCCGCGACAGGAGG
CGACACAGCAGTGCTTCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGA
GAGCATCGGTATCTGATACCGCGTGATGCGAAAAAGAAGGATATATTCCG
ATACAAGGTACGTTTGCCGCCATATGTCACCTGCACACAGTGCGTACTCC
AATGGACCTACTATACGGCCAATATGTGGGGCACCTGTGCCAATGGCACC
GAAGCCGTTGGCTGCGGCAAGGCAGAGACATTCCGCAATTGTGCGGATGT
GGCGATCGTTTCGAATACCGGCGGCGGTATTCCACCGCCTTTCGTGAATA
ACAAATCGCCATACCTGCTCTATTATCGAGATTATCGTGCTCCGGCGGAC
AACAACATCTTTCCACTTATTGTGCGCAATGCCACGCGGCATGCACGCAA
ACAAGGCAAGGCTAAGCCGCCTGGCCGTGCAAGCTTTCTAGACCAT
BO12355.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42749-RB | 858 | CG42749-PB | 1..855 | 74..928 | 4275 | 100 | Plus |
CG42749-RC | 1038 | CG42749-PC | 1..803 | 74..876 | 4015 | 100 | Plus |
CG42749-RD | 1038 | CG42749-PD | 1..803 | 74..876 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42749-RB | 1407 | CG42749-RB | 225..1135 | 18..928 | 4555 | 100 | Plus |
CG42749-RC | 1412 | CG42749-RC | 225..1083 | 18..876 | 4295 | 100 | Plus |
CG42749-RD | 1488 | CG42749-RD | 301..1159 | 18..876 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5301464..5302059 | 130..725 | 2980 | 100 | Plus |
X | 23542271 | X | 5302118..5302271 | 723..876 | 770 | 100 | Plus |
X | 23542271 | X | 5301319..5301404 | 45..130 | 430 | 100 | Plus |
X | 23542271 | X | 5302570..5302622 | 876..928 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:41:11 has no hits.
BO12355.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:14 Download gff for
BO12355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15786-RA | 1..858 | 74..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:37 Download gff for
BO12355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15786-RA | 201..1123 | 10..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:16 Download gff for
BO12355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42749-RB | 223..1135 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:15 Download gff for
BO12355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15786-RA | 201..1123 | 10..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:18 Download gff for
BO12355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42749-RB | 223..1135 | 17..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:18 Download gff for
BO12355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5296364..5296394 | 17..46 | 96 | -> | Plus |
X | 5301321..5301404 | 47..130 | 100 | -> | Plus |
X | 5301465..5302059 | 131..725 | 100 | -> | Plus |
X | 5302121..5302271 | 726..876 | 100 | -> | Plus |
X | 5302571..5302622 | 877..930 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:16 Download gff for
BO12355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5190397..5190427 | 17..46 | 96 | -> | Plus |
arm_X | 5195354..5195437 | 47..130 | 100 | -> | Plus |
arm_X | 5195498..5196092 | 131..725 | 100 | -> | Plus |
arm_X | 5196154..5196304 | 726..876 | 100 | -> | Plus |
arm_X | 5196604..5196655 | 877..930 | 96 | | Plus |
BO12355.pep Sequence
Translation from 16 to 946
> BO12355.pep
MQRKLHKNIQATGHLRQSGMAMRHLTAATMGVLLPVGVLGFVVLMQLMAS
VRGHGRLMDPPARNAMWRFGYPNPVNYNDNELFCGGYAVQWEQNKGRCGI
CGDAYHVKSPRPHEAGGQYAKGIISRYYTAGQTIDVEVELTANHYGRFEM
FLCPNNNPRQEATQQCFDRYPLLISGSREHRYLIPRDAKKKDIFRYKVRL
PPYVTCTQCVLQWTYYTANMWGTCANGTEAVGCGKAETFRNCADVAIVSN
TGGGIPPPFVNNKSPYLLYYRDYRAPADNNIFPLIVRNATRHARKQGKAK
PPGRASFLDH
BO12355.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42749-PB | 285 | CG15786-PA | 1..285 | 20..304 | 1573 | 100 | Plus |
CG42749-PC | 345 | CG42749-PC | 1..269 | 20..288 | 1482 | 99.6 | Plus |
CG42749-PD | 345 | CG42749-PD | 1..269 | 20..288 | 1482 | 99.6 | Plus |
CG42598-PB | 340 | CG42598-PB | 1..226 | 25..249 | 489 | 41.6 | Plus |
CG41284-PC | 340 | CG41284-PC | 1..226 | 25..249 | 481 | 41.1 | Plus |