Clone Sequence Records
BO12357.3prime Sequence
867 bp (806 high quality bases) assembled on 2006-04-20
> BO12357.3prime
ATGGTCTAGAAAGCTTGCATGCCGATCCTGTAGTTGCAGCCAGAAATCTG
GTGGCGAAATAATCAGTCCATTGAGGTTCTGGGAGAGATCGGGCAACCGA
TCATTGGGGCCCAGGACGAAGTCAAAGTGCTGGCACATGGTCGCTGTCAC
CAGGAAGAGCATGTTGCGCGCAAATGTCTCGCCGGCACAGAGCCGTTTTC
CCGCTCCAAAGGGCAGCGAGACATCCAGTTTCAGGCAGAGCTTGCCATCC
GCGTCCAGGAATCTCTCCGGCCGGAACTGCTCCGGATCCGACCAAATACG
GGCGTCCGAGTGGAAGGCATACAGGCTGGGCACGACAATGGTGTCCTTGG
GTATCCGGTAGCCCAGCAATTCGGTGTCCTCCAGCGCCTTGTGCGGGACA
TCCGAGGGAACCAGCGTCTCGATGCGCAGACCTTCGCGAATGGTGGCCTC
CGTGAAGGGCAAGTTCTTGCGATCCTCCAGGTTGGGCAATCGTCCGCATC
CCACCACCTCGTCGATCTCGTTCTGAACCCGCCGCAGAACTGCCGGATAT
AGCATGAGATACTGGACGAGTAGCGATAGCTGCACTCCGATGGCAGTGAA
GGCCGGAAAGGAGAAGTCCACCAGGCCCATGATCAATTGATCCCGATTGA
AACCGTAGCCCGGACCTCGGCGCATTTCAGCTATGTAGACATCCATGAAG
TTGCGCTCCACACCCTCTTCGTAGCTGTCCAAATACTTATCCACAAAGTC
GGCAAAGAACTGCCGCACGAATAGGTTGGACTCGTTTAGCTTGTTGTAGC
CACTCCATTCGGGCCAAATGTGCCGAATCCACGGTATAATGCTCAACATT
TTGCCGTAGTCGTCCGC
BO12357.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7241-PA | 1533 | Cyp304a1-RA | 682..1530 | 867..19 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp304a1-RA | 1716 | CG7241-RA | 714..1562 | 867..19 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12964855..12965377 | 867..345 | 2615 | 100 | Minus |
3R | 32079331 | 3R | 12965441..12965769 | 347..19 | 1645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:51:45 has no hits.
BO12357.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:29 Download gff for
BO12357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7241-PA | 682..1533 | 16..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:20 Download gff for
BO12357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7241-PA | 682..1533 | 16..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:04:49 Download gff for
BO12357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp304a1-RA | 714..1568 | 14..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:44:35 Download gff for
BO12357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp304a1-RA | 714..1568 | 14..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:44:35 Download gff for
BO12357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12964855..12965376 | 346..867 | 100 | -> | Minus |
3R | 12965443..12965775 | 14..345 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:04:49 Download gff for
BO12357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8790577..8791098 | 346..867 | 100 | -> | Minus |
arm_3R | 8791165..8791497 | 14..345 | 99 | | Minus |
BO12357.5prime Sequence
878 bp (822 high quality bases) assembled on 2006-04-20
> BO12357.5prime
GAAGTTATCAGTCGACATGATCACGGAAACTCTCCTGACGATCTGCGCGG
CGGTGTTCCTCTGCCTTTCGTATCGATATGCAGTGGGTCGACCCTCCGGT
TTTCCACCCGGTCCTCCAAAGATTCCGCTTTTCGGCAGCTACCTCTTCAT
GTTGATCATCAACTTTAAGTATCTGCACAAGGCGGCTCTGACCCTCAGTC
GGTGGTACAAGTCGGATATCATTGGACTGCATGTGGGTCCTTTTCCGGTG
GCCGTTGTCCACAGTGCGGATGGAGTGCGCGAGATCCTCAATAATCAGGT
GTTCGATGGACGGCCGCAGCTTTTCGTGGCCGCCATGCGCGATCCCGGCC
AAGATGTGCGAGGGATCTTTTTCCAGGATGGCCCCCTGTGGAAGGAGCAA
CGTCGCTTCATCCTGCGCTACTTAAGAGACTTTGGTTTCGGACGACGATT
CGACCAACTGGAGCTGGTCATCCAGGAGCAGTTGAACGACATGCTGGATC
TGATCCGCAACGGTCCAAAGTATCCGCATGAGCACGAGATGGTGAAATCC
GGAGGATATCGCGTGCTTCTGCCGCTGCTCTTTAATCCCTTCTCGGCCAA
CGCTCACTTTTACATTGTCTACAATGAGTGCCTGAGTCGCGAGGAAATGG
GCAAATTGGTGAAGCTCTGCCAGATGGGCATACAGTTCCAGCGGAATGCG
GACGACTACGGCAAAATGTTGAGCATTATACCGTGGATTCGGCACATTTG
GCCCGAATGGAGTGGCTACAACAAGCTAAACGAGTCCAACCTATTCGTGC
GGCAGTTCTTTGCCGACTTTGTGGATAAGTATTTGGACAGCTACGAAGAG
GGTGTGGAGCGCAACTTCATGGATGTCT
BO12357.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7241-PA | 1533 | Cyp304a1-RA | 1..862 | 17..878 | 4285 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp304a1-RA | 1716 | CG7241-RA | 33..894 | 17..878 | 4295 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12964518..12965035 | 361..878 | 2590 | 100 | Plus |
3R | 32079331 | 3R | 12963977..12964230 | 110..363 | 1270 | 100 | Plus |
3R | 32079331 | 3R | 12963823..12963918 | 17..112 | 465 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:20:09 has no hits.
BO12357.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:31 Download gff for
BO12357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7241-PA | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:22 Download gff for
BO12357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7241-PA | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:18:20 Download gff for
BO12357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp304a1-RA | 27..894 | 12..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:56 Download gff for
BO12357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp304a1-RA | 27..894 | 12..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:56 Download gff for
BO12357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12963817..12963916 | 11..110 | 96 | -> | Plus |
3R | 12963978..12964229 | 111..362 | 100 | -> | Plus |
3R | 12964520..12965035 | 363..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:18:20 Download gff for
BO12357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8789539..8789638 | 11..110 | 96 | -> | Plus |
arm_3R | 8789700..8789951 | 111..362 | 100 | -> | Plus |
arm_3R | 8790242..8790757 | 363..878 | 100 | | Plus |
BO12357.complete Sequence
1564 bp assembled on 2006-10-11
GenBank Submission: FJ632413
> BO12357.complete
GAAGTTATCAGTCGACATGATCACGGAAACTCTCCTGACGATCTGCGCGG
CGGTGTTCCTCTGCCTTTCGTATCGATATGCAGTGGGTCGACCCTCCGGT
TTTCCACCCGGTCCTCCAAAGATTCCGCTTTTCGGCAGCTACCTCTTCAT
GTTGATCATCAACTTTAAGTATCTGCACAAGGCGGCTCTGACCCTCAGTC
GGTGGTACAAGTCGGATATCATTGGACTGCATGTGGGTCCTTTTCCGGTG
GCCGTTGTCCACAGTGCGGATGGAGTGCGCGAGATCCTCAATAATCAGGT
GTTCGATGGACGGCCGCAGCTTTTCGTGGCCGCCATGCGCGATCCCGGCC
AAGATGTGCGAGGGATCTTTTTCCAGGATGGCCCCCTGTGGAAGGAGCAA
CGTCGCTTCATCCTGCGCTACTTAAGAGACTTTGGTTTCGGACGACGATT
CGACCAACTGGAGCTGGTCATCCAGGAGCAGTTGAACGACATGCTGGATC
TGATCCGCAACGGTCCAAAGTATCCGCATGAGCACGAGATGGTGAAATCC
GGAGGATATCGCGTGCTTCTGCCGCTGCTCTTTAATCCCTTCTCGGCCAA
CGCTCACTTTTACATTGTCTACAATGAGTGCCTGAGTCGCGAGGAAATGG
GCAAATTGGTGAAGCTCTGCCAGATGGGCATACAGTTCCAGCGGAATGCG
GACGACTACGGCAAAATGTTGAGCATTATACCGTGGATTCGGCACATTTG
GCCCGAATGGAGTGGCTACAACAAGCTAAACGAGTCCAACCTATTCGTGC
GGCAGTTCTTTGCCGACTTTGTGGATAAGTATTTGGACAGCTACGAAGAG
GGTGTGGAGCGCAACTTCATGGATGTCTACATAGCTGAAATGCGCCGAGG
TCCGGGCTACGGTTTCAATCGGGATCAATTGATCATGGGCCTGGTGGACT
TCTCCTTTCCGGCCTTCACTGCCATCGGAGTGCAGCTATCGCTACTCGTC
CAGTATCTCATGCTATATCCGGCAGTTCTGCGGCGGGTTCAGAACGAGAT
CGACGAGGTGGTGGGATGCGGACGATTGCCCAACCTGGAGGATCGCAAGA
ACTTGCCCTTCACGGAGGCCACCATTCGCGAAGGTCTGCGCATCGAGACG
CTGGTTCCCTCGGATGTCCCGCACAAGGCGCTGGAGGACACCGAATTGCT
GGGCTACCGGATACCCAAGGACACCATTGTCGTGCCCAGCCTGTATGCCT
TCCACTCGGACGCCCGTATTTGGTCGGATCCGGAGCAGTTCCGGCCGGAG
AGATTCCTGGACGCGGATGGCAAGCTCTGCCTGAAACTGGATGTCTCGCT
GCCCTTTGGAGCGGGAAAACGGCTCTGTGCCGGCGAGACATTTGCGCGCA
ACATGCTCTTCCTGGTGACAGCGACCATGTGCCAGCACTTTGACTTCGTC
CTGGGCCCCAATGATCGGTTGCCCGATCTCTCCCAGAACCTCAATGGACT
GATTATTTCGCCACCAGATTTCTGGCTGCAACTACAGGATCGGCATGCAA
GCTTTCTAGACCAT
BO12357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp304a1-RA | 1533 | CG7241-PA | 1..1530 | 17..1546 | 7635 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp304a1-RA | 1716 | CG7241-RA | 33..1562 | 17..1546 | 7635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12964518..12965377 | 361..1220 | 4300 | 100 | Plus |
3R | 32079331 | 3R | 12965441..12965769 | 1218..1546 | 1645 | 100 | Plus |
3R | 32079331 | 3R | 12963977..12964230 | 110..363 | 1270 | 100 | Plus |
3R | 32079331 | 3R | 12963823..12963918 | 17..112 | 465 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:28:39 has no hits.
BO12357.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:16 Download gff for
BO12357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp304a1-RA | 1..1533 | 17..1549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:38 Download gff for
BO12357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp304a1-RA | 21..1562 | 12..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:59 Download gff for
BO12357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp304a1-RA | 33..1562 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:16 Download gff for
BO12357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp304a1-RA | 21..1562 | 12..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:11 Download gff for
BO12357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp304a1-RA | 33..1562 | 17..1548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:11 Download gff for
BO12357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12963823..12963916 | 17..110 | 98 | -> | Plus |
3R | 12963978..12964229 | 111..362 | 100 | -> | Plus |
3R | 12964520..12965376 | 363..1219 | 100 | -> | Plus |
3R | 12965443..12965769 | 1220..1548 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:59 Download gff for
BO12357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8789545..8789638 | 17..110 | 98 | -> | Plus |
arm_3R | 8789700..8789951 | 111..362 | 100 | -> | Plus |
arm_3R | 8790242..8791098 | 363..1219 | 100 | -> | Plus |
arm_3R | 8791165..8791491 | 1220..1548 | 99 | | Plus |
BO12357.pep Sequence
Translation from 16 to 1564
> BO12357.pep
MITETLLTICAAVFLCLSYRYAVGRPSGFPPGPPKIPLFGSYLFMLIINF
KYLHKAALTLSRWYKSDIIGLHVGPFPVAVVHSADGVREILNNQVFDGRP
QLFVAAMRDPGQDVRGIFFQDGPLWKEQRRFILRYLRDFGFGRRFDQLEL
VIQEQLNDMLDLIRNGPKYPHEHEMVKSGGYRVLLPLLFNPFSANAHFYI
VYNECLSREEMGKLVKLCQMGIQFQRNADDYGKMLSIIPWIRHIWPEWSG
YNKLNESNLFVRQFFADFVDKYLDSYEEGVERNFMDVYIAEMRRGPGYGF
NRDQLIMGLVDFSFPAFTAIGVQLSLLVQYLMLYPAVLRRVQNEIDEVVG
CGRLPNLEDRKNLPFTEATIREGLRIETLVPSDVPHKALEDTELLGYRIP
KDTIVVPSLYAFHSDARIWSDPEQFRPERFLDADGKLCLKLDVSLPFGAG
KRLCAGETFARNMLFLVTATMCQHFDFVLGPNDRLPDLSQNLNGLIISPP
DFWLQLQDRHASFLDH
BO12357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp304a1-PA | 510 | CG7241-PA | 1..510 | 1..510 | 2716 | 100 | Plus |
Cyp305a1-PA | 504 | CG8733-PA | 4..503 | 6..509 | 543 | 29.4 | Plus |
Cyp18a1-PB | 538 | CG6816-PB | 54..520 | 30..509 | 496 | 28.9 | Plus |
Cyp18a1-PA | 538 | CG6816-PA | 54..520 | 30..509 | 496 | 28.9 | Plus |
Cyp303a1-PB | 503 | CG4163-PB | 4..475 | 5..481 | 490 | 30.7 | Plus |