Clone BO12357 Report

Search the DGRC for BO12357

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCyp304a1-RA
Protein status:BO12357.pep: validated full length
Sequenced Size:1564

Clone Sequence Records

BO12357.3prime Sequence

867 bp (806 high quality bases) assembled on 2006-04-20

> BO12357.3prime
ATGGTCTAGAAAGCTTGCATGCCGATCCTGTAGTTGCAGCCAGAAATCTG
GTGGCGAAATAATCAGTCCATTGAGGTTCTGGGAGAGATCGGGCAACCGA
TCATTGGGGCCCAGGACGAAGTCAAAGTGCTGGCACATGGTCGCTGTCAC
CAGGAAGAGCATGTTGCGCGCAAATGTCTCGCCGGCACAGAGCCGTTTTC
CCGCTCCAAAGGGCAGCGAGACATCCAGTTTCAGGCAGAGCTTGCCATCC
GCGTCCAGGAATCTCTCCGGCCGGAACTGCTCCGGATCCGACCAAATACG
GGCGTCCGAGTGGAAGGCATACAGGCTGGGCACGACAATGGTGTCCTTGG
GTATCCGGTAGCCCAGCAATTCGGTGTCCTCCAGCGCCTTGTGCGGGACA
TCCGAGGGAACCAGCGTCTCGATGCGCAGACCTTCGCGAATGGTGGCCTC
CGTGAAGGGCAAGTTCTTGCGATCCTCCAGGTTGGGCAATCGTCCGCATC
CCACCACCTCGTCGATCTCGTTCTGAACCCGCCGCAGAACTGCCGGATAT
AGCATGAGATACTGGACGAGTAGCGATAGCTGCACTCCGATGGCAGTGAA
GGCCGGAAAGGAGAAGTCCACCAGGCCCATGATCAATTGATCCCGATTGA
AACCGTAGCCCGGACCTCGGCGCATTTCAGCTATGTAGACATCCATGAAG
TTGCGCTCCACACCCTCTTCGTAGCTGTCCAAATACTTATCCACAAAGTC
GGCAAAGAACTGCCGCACGAATAGGTTGGACTCGTTTAGCTTGTTGTAGC
CACTCCATTCGGGCCAAATGTGCCGAATCCACGGTATAATGCTCAACATT
TTGCCGTAGTCGTCCGC

BO12357.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7241-PA 1533 Cyp304a1-RA 682..1530 867..19 4245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp304a1-RA 1716 CG7241-RA 714..1562 867..19 4245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12964855..12965377 867..345 2615 100 Minus
3R 32079331 3R 12965441..12965769 347..19 1645 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:51:45 has no hits.

BO12357.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:29 Download gff for BO12357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7241-PA 682..1533 16..867 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:20 Download gff for BO12357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7241-PA 682..1533 16..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:04:49 Download gff for BO12357.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 714..1568 14..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:44:35 Download gff for BO12357.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 714..1568 14..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:44:35 Download gff for BO12357.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12964855..12965376 346..867 100 -> Minus
3R 12965443..12965775 14..345 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:04:49 Download gff for BO12357.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8790577..8791098 346..867 100 -> Minus
arm_3R 8791165..8791497 14..345 99   Minus

BO12357.5prime Sequence

878 bp (822 high quality bases) assembled on 2006-04-20

> BO12357.5prime
GAAGTTATCAGTCGACATGATCACGGAAACTCTCCTGACGATCTGCGCGG
CGGTGTTCCTCTGCCTTTCGTATCGATATGCAGTGGGTCGACCCTCCGGT
TTTCCACCCGGTCCTCCAAAGATTCCGCTTTTCGGCAGCTACCTCTTCAT
GTTGATCATCAACTTTAAGTATCTGCACAAGGCGGCTCTGACCCTCAGTC
GGTGGTACAAGTCGGATATCATTGGACTGCATGTGGGTCCTTTTCCGGTG
GCCGTTGTCCACAGTGCGGATGGAGTGCGCGAGATCCTCAATAATCAGGT
GTTCGATGGACGGCCGCAGCTTTTCGTGGCCGCCATGCGCGATCCCGGCC
AAGATGTGCGAGGGATCTTTTTCCAGGATGGCCCCCTGTGGAAGGAGCAA
CGTCGCTTCATCCTGCGCTACTTAAGAGACTTTGGTTTCGGACGACGATT
CGACCAACTGGAGCTGGTCATCCAGGAGCAGTTGAACGACATGCTGGATC
TGATCCGCAACGGTCCAAAGTATCCGCATGAGCACGAGATGGTGAAATCC
GGAGGATATCGCGTGCTTCTGCCGCTGCTCTTTAATCCCTTCTCGGCCAA
CGCTCACTTTTACATTGTCTACAATGAGTGCCTGAGTCGCGAGGAAATGG
GCAAATTGGTGAAGCTCTGCCAGATGGGCATACAGTTCCAGCGGAATGCG
GACGACTACGGCAAAATGTTGAGCATTATACCGTGGATTCGGCACATTTG
GCCCGAATGGAGTGGCTACAACAAGCTAAACGAGTCCAACCTATTCGTGC
GGCAGTTCTTTGCCGACTTTGTGGATAAGTATTTGGACAGCTACGAAGAG
GGTGTGGAGCGCAACTTCATGGATGTCT

BO12357.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7241-PA 1533 Cyp304a1-RA 1..862 17..878 4285 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp304a1-RA 1716 CG7241-RA 33..894 17..878 4295 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12964518..12965035 361..878 2590 100 Plus
3R 32079331 3R 12963977..12964230 110..363 1270 100 Plus
3R 32079331 3R 12963823..12963918 17..112 465 99 Plus
Blast to na_te.dros performed on 2015-02-02 11:20:09 has no hits.

BO12357.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:31 Download gff for BO12357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7241-PA 1..862 17..878 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:22 Download gff for BO12357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7241-PA 1..862 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:18:20 Download gff for BO12357.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 27..894 12..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:56 Download gff for BO12357.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 27..894 12..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:56 Download gff for BO12357.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12963817..12963916 11..110 96 -> Plus
3R 12963978..12964229 111..362 100 -> Plus
3R 12964520..12965035 363..878 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:18:20 Download gff for BO12357.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8789539..8789638 11..110 96 -> Plus
arm_3R 8789700..8789951 111..362 100 -> Plus
arm_3R 8790242..8790757 363..878 100   Plus

BO12357.complete Sequence

1564 bp assembled on 2006-10-11

GenBank Submission: FJ632413

> BO12357.complete
GAAGTTATCAGTCGACATGATCACGGAAACTCTCCTGACGATCTGCGCGG
CGGTGTTCCTCTGCCTTTCGTATCGATATGCAGTGGGTCGACCCTCCGGT
TTTCCACCCGGTCCTCCAAAGATTCCGCTTTTCGGCAGCTACCTCTTCAT
GTTGATCATCAACTTTAAGTATCTGCACAAGGCGGCTCTGACCCTCAGTC
GGTGGTACAAGTCGGATATCATTGGACTGCATGTGGGTCCTTTTCCGGTG
GCCGTTGTCCACAGTGCGGATGGAGTGCGCGAGATCCTCAATAATCAGGT
GTTCGATGGACGGCCGCAGCTTTTCGTGGCCGCCATGCGCGATCCCGGCC
AAGATGTGCGAGGGATCTTTTTCCAGGATGGCCCCCTGTGGAAGGAGCAA
CGTCGCTTCATCCTGCGCTACTTAAGAGACTTTGGTTTCGGACGACGATT
CGACCAACTGGAGCTGGTCATCCAGGAGCAGTTGAACGACATGCTGGATC
TGATCCGCAACGGTCCAAAGTATCCGCATGAGCACGAGATGGTGAAATCC
GGAGGATATCGCGTGCTTCTGCCGCTGCTCTTTAATCCCTTCTCGGCCAA
CGCTCACTTTTACATTGTCTACAATGAGTGCCTGAGTCGCGAGGAAATGG
GCAAATTGGTGAAGCTCTGCCAGATGGGCATACAGTTCCAGCGGAATGCG
GACGACTACGGCAAAATGTTGAGCATTATACCGTGGATTCGGCACATTTG
GCCCGAATGGAGTGGCTACAACAAGCTAAACGAGTCCAACCTATTCGTGC
GGCAGTTCTTTGCCGACTTTGTGGATAAGTATTTGGACAGCTACGAAGAG
GGTGTGGAGCGCAACTTCATGGATGTCTACATAGCTGAAATGCGCCGAGG
TCCGGGCTACGGTTTCAATCGGGATCAATTGATCATGGGCCTGGTGGACT
TCTCCTTTCCGGCCTTCACTGCCATCGGAGTGCAGCTATCGCTACTCGTC
CAGTATCTCATGCTATATCCGGCAGTTCTGCGGCGGGTTCAGAACGAGAT
CGACGAGGTGGTGGGATGCGGACGATTGCCCAACCTGGAGGATCGCAAGA
ACTTGCCCTTCACGGAGGCCACCATTCGCGAAGGTCTGCGCATCGAGACG
CTGGTTCCCTCGGATGTCCCGCACAAGGCGCTGGAGGACACCGAATTGCT
GGGCTACCGGATACCCAAGGACACCATTGTCGTGCCCAGCCTGTATGCCT
TCCACTCGGACGCCCGTATTTGGTCGGATCCGGAGCAGTTCCGGCCGGAG
AGATTCCTGGACGCGGATGGCAAGCTCTGCCTGAAACTGGATGTCTCGCT
GCCCTTTGGAGCGGGAAAACGGCTCTGTGCCGGCGAGACATTTGCGCGCA
ACATGCTCTTCCTGGTGACAGCGACCATGTGCCAGCACTTTGACTTCGTC
CTGGGCCCCAATGATCGGTTGCCCGATCTCTCCCAGAACCTCAATGGACT
GATTATTTCGCCACCAGATTTCTGGCTGCAACTACAGGATCGGCATGCAA
GCTTTCTAGACCAT

BO12357.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp304a1-RA 1533 CG7241-PA 1..1530 17..1546 7635 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp304a1-RA 1716 CG7241-RA 33..1562 17..1546 7635 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12964518..12965377 361..1220 4300 100 Plus
3R 32079331 3R 12965441..12965769 1218..1546 1645 100 Plus
3R 32079331 3R 12963977..12964230 110..363 1270 100 Plus
3R 32079331 3R 12963823..12963918 17..112 465 99 Plus
Blast to na_te.dros performed on 2014-11-28 00:28:39 has no hits.

BO12357.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:16 Download gff for BO12357.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 1..1533 17..1549 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:38 Download gff for BO12357.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 21..1562 12..1551 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:59 Download gff for BO12357.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 33..1562 17..1548 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:16 Download gff for BO12357.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 21..1562 12..1551 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:11 Download gff for BO12357.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 33..1562 17..1548 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:11 Download gff for BO12357.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12963823..12963916 17..110 98 -> Plus
3R 12963978..12964229 111..362 100 -> Plus
3R 12964520..12965376 363..1219 100 -> Plus
3R 12965443..12965769 1220..1548 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:59 Download gff for BO12357.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8789545..8789638 17..110 98 -> Plus
arm_3R 8789700..8789951 111..362 100 -> Plus
arm_3R 8790242..8791098 363..1219 100 -> Plus
arm_3R 8791165..8791491 1220..1548 99   Plus

BO12357.pep Sequence

Translation from 16 to 1564

> BO12357.pep
MITETLLTICAAVFLCLSYRYAVGRPSGFPPGPPKIPLFGSYLFMLIINF
KYLHKAALTLSRWYKSDIIGLHVGPFPVAVVHSADGVREILNNQVFDGRP
QLFVAAMRDPGQDVRGIFFQDGPLWKEQRRFILRYLRDFGFGRRFDQLEL
VIQEQLNDMLDLIRNGPKYPHEHEMVKSGGYRVLLPLLFNPFSANAHFYI
VYNECLSREEMGKLVKLCQMGIQFQRNADDYGKMLSIIPWIRHIWPEWSG
YNKLNESNLFVRQFFADFVDKYLDSYEEGVERNFMDVYIAEMRRGPGYGF
NRDQLIMGLVDFSFPAFTAIGVQLSLLVQYLMLYPAVLRRVQNEIDEVVG
CGRLPNLEDRKNLPFTEATIREGLRIETLVPSDVPHKALEDTELLGYRIP
KDTIVVPSLYAFHSDARIWSDPEQFRPERFLDADGKLCLKLDVSLPFGAG
KRLCAGETFARNMLFLVTATMCQHFDFVLGPNDRLPDLSQNLNGLIISPP
DFWLQLQDRHASFLDH

BO12357.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp304a1-PA 510 CG7241-PA 1..510 1..510 2716 100 Plus
Cyp305a1-PA 504 CG8733-PA 4..503 6..509 543 29.4 Plus
Cyp18a1-PB 538 CG6816-PB 54..520 30..509 496 28.9 Plus
Cyp18a1-PA 538 CG6816-PA 54..520 30..509 496 28.9 Plus
Cyp303a1-PB 503 CG4163-PB 4..475 5..481 490 30.7 Plus