Clone Sequence Records
BO12359.complete Sequence
619 bp assembled on 2010-02-09
GenBank Submission: FJ632414
> BO12359.complete
GAAGTTATCAGTCGACATGGCAGCCTCAATGGATGAGGATATAACCGCCA
ACCCGCCCCCAAGCAGCGAAGAGGACCCCCTGGCCGAGGAGCGCCTAGGC
TTTGTGCGGGAAGTGGGCGCGCAGGCTGTTTGGAGCCTCTCCTCCTGCAA
GCCGGGATTTGGTGTAGAGCGTTTGCGAGACAACATCATGGATACTTATT
GGCAGTCGGACGGTCAGCTTCCCCACCTGGTCAACATTCAATTCCACAAG
CGTACGAACATCAGTCAGATTTACATATACACGGATTACAAGCTGGACGA
GAGTTACACGCCATCAAGGATCTCCATACGATCTGGAACGAACTTCAACG
ACTTGCAGGAGCTGCAGGTGATGGACCTGACCGAACCCACCGGCTGGGTG
CAGATACCCATTAAGGATGGGAACGTCAAGTCCATACGCACCTTCATGCT
TCAGATTGCTGTGATCTCGAACCACCAGAATGGCAGGGACACCCACATGC
GCCAGATCCGCATCCATGCGCCCGTCGAGGGCAAGCACTATCCTCTGGAA
CTGTTTGGCAAGTTTGGAACGGTCGACTTTCAGAAGTTCGCCACCATTCG
TGCAAGCTTTCTAGACCAT
BO12359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC10-RA | 588 | CG11419-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC10-RA | 867 | CG11419-RA | 78..662 | 17..601 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17517466..17517912 | 601..155 | 2235 | 100 | Minus |
| 2R | 25286936 | 2R | 17517970..17518109 | 156..17 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:24:57 has no hits.
BO12359.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:24 Download gff for
BO12359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-RA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:09 Download gff for
BO12359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-RA | 75..659 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:53 Download gff for
BO12359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 78..662 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:08 Download gff for
BO12359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-RA | 75..659 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:14 Download gff for
BO12359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 78..662 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:14 Download gff for
BO12359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17517464..17517911 | 156..603 | 99 | <- | Minus |
| 2R | 17517971..17518109 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:53 Download gff for
BO12359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13404969..13405416 | 156..603 | 99 | <- | Minus |
| arm_2R | 13405476..13405614 | 17..155 | 100 | | Minus |
BO12359.3prime Sequence
617 bp (616 high quality bases) assembled on 2006-04-20
> BO12359.3prime
ATGGTCTAGAAAGCTTGCACGAATGGTGGCGAACTTCTGAAAGTCGACCG
TTCCAAACTTGCCAAACAGTTCCAGAGGATAGTGCTTGCCCTCGACGGGC
GCATGGATGCGGATCTGGCGCATGTGGGTGTCCCTGCCATTCTGGTGGTT
CGAGATCACAGCAATCTGAAGCATGAAGGTGCGTATGGACTTGACGTTCC
CATCCTTAATGGGTATCTGCACCCAGCCGGTGGGTTCGGTCAGGTCCATC
ACCTGCAGCTCCTGCAAGTCGTTGAAGTTCGTTCCAGATCGTATGGAGAT
CCTTGATGGCGTGTAACTCTCGTCCAGCTTGTAATCCGTGTATATGTAAA
TCTGACTGATGTTCGTACGCTTGTGGAATTGAATGTTGACCAGGTGGGGA
AGCTGACCGTCCGACTGCCAATAAGTATCCATGATGTTGTCTCGCAAACG
CTCTACACCAAATCCCGGCTTGCAGGAGGAGAGGCTCCAAACAGCCTGCG
CGCCCACTTCCCGCACAAAGCCTAGGCGCTCCTCGGCCAGGGGGTCCTCT
TCGCTGCTTGGGGGCGGGTTGGCGGTTATATCCTCATCCATTGAGGCTGC
CATGTCGACTGATAACT
BO12359.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11419-PA | 588 | CG11419-RA | 1..585 | 603..19 | 2925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC10-RA | 867 | CG11419-RA | 78..662 | 603..19 | 2925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17517466..17517912 | 19..465 | 2235 | 100 | Plus |
| 2R | 25286936 | 2R | 17517970..17518109 | 464..603 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:01:09 has no hits.
BO12359.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:34 Download gff for
BO12359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-PA | 1..588 | 18..603 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:26 Download gff for
BO12359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-PA | 1..588 | 18..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:28:53 Download gff for
BO12359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 78..662 | 19..603 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:50:02 Download gff for
BO12359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 78..662 | 19..603 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:50:02 Download gff for
BO12359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17517466..17517911 | 19..464 | 100 | <- | Plus |
| 2R | 17517971..17518109 | 465..603 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:28:53 Download gff for
BO12359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13404971..13405416 | 19..464 | 100 | <- | Plus |
| arm_2R | 13405476..13405614 | 465..603 | 100 | | Plus |
BO12359.5prime Sequence
617 bp (616 high quality bases) assembled on 2006-04-20
> BO12359.5prime
GAAGTTATCAGTCGACATGGCAGCCTCAATGGATGAGGATATAACCGCCA
ACCCGCCCCCAAGCAGCGAAGAGGACCCCCTGGCCGAGGAGCGCCTAGGC
TTTGTGCGGGAAGTGGGCGCGCAGGCTGTTTGGAGCCTCTCCTCCTGCAA
GCCGGGATTTGGTGTAGAGCGTTTGCGAGACAACATCATGGATACTTATT
GGCAGTCGGACGGTCAGCTTCCCCACCTGGTCAACATTCAATTCCACAAG
CGTACGAACATCAGTCAGATTTACATATACACGGATTACAAGCTGGACGA
GAGTTACACGCCATCAAGGATCTCCATACGATCTGGAACGAACTTCAACG
ACTTGCAGGAGCTGCAGGTGATGGACCTGACCGAACCCACCGGCTGGGTG
CAGATACCCATTAAGGATGGGAACGTCAAGTCCATACGCACCTTCATGCT
TCAGATTGCTGTGATCTCGAACCACCAGAATGGCAGGGACACCCACATGC
GCCAGATCCGCATCCATGCGCCCGTCGAGGGCAAGCACTATCCTCTGGAA
CTGTTTGGCAAGTTTGGAACGGTCGACTTTCAGAAGTTCGCCACCATTCG
TGCAAGCTTTCTAGACC
BO12359.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11419-PA | 588 | CG11419-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC10-RA | 867 | CG11419-RA | 78..662 | 17..601 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17517466..17517912 | 601..155 | 2235 | 100 | Minus |
| 2R | 25286936 | 2R | 17517970..17518109 | 156..17 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:50:35 has no hits.
BO12359.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:35 Download gff for
BO12359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-PA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:27 Download gff for
BO12359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11419-PA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:42 Download gff for
BO12359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 78..662 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:15:05 Download gff for
BO12359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APC10-RA | 78..662 | 17..601 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:15:05 Download gff for
BO12359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17517466..17517911 | 156..601 | 100 | <- | Minus |
| 2R | 17517971..17518109 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:42 Download gff for
BO12359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13404971..13405416 | 156..601 | 100 | <- | Minus |
| arm_2R | 13405476..13405614 | 17..155 | 100 | | Minus |
BO12359.pep Sequence
Translation from 16 to 619
> BO12359.pep
MAASMDEDITANPPPSSEEDPLAEERLGFVREVGAQAVWSLSSCKPGFGV
ERLRDNIMDTYWQSDGQLPHLVNIQFHKRTNISQIYIYTDYKLDESYTPS
RISIRSGTNFNDLQELQVMDLTEPTGWVQIPIKDGNVKSIRTFMLQIAVI
SNHQNGRDTHMRQIRIHAPVEGKHYPLELFGKFGTVDFQKFATIRASFLD
H
BO12359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APC10-PA | 195 | CG11419-PA | 1..195 | 1..195 | 1029 | 100 | Plus |
