Clone Sequence Records
BO12360.3prime Sequence
930 bp (772 high quality bases) assembled on 2006-04-20
> BO12360.3prime
ATGGTCTAGAAAGCTTGCGAGCCAGCAGCCCATGCAGTTGATGCCGCAGC
AGTGGCGGTGCTGCAGGCTGATCTTGATCTTGTTGCGCAACAACTCCTCC
TCGTATTGGCACGGACAGATGGACGATTGCAGATGGCGGGGCGTCTCGTG
GACGCCGGCCTCCTGGACAGTCCAATCCAGACGGCGGCGCAGGAAGTCCT
TGCCCCAGCGCTGCAGGTAGCTCAGAAACAGCTCCTGGGCCACGGCCTGC
TTGCGGGGCATTCGCACCGGCTGACTGCCCTGGATAACAATATCGTTTAG
GTCAATGTCCAGCTTCGCCTCCCAGCCCGCCTTGATGGCATCGCCACCAG
TTTGCTCCGTATGCTCCAGGAACTCGTTCAGGAAATTAACGCACTGTGTG
GCATCAAAGTACATGAAGCACAGGTTGACCTTGTGGCACGAGATGCGGCC
CCGATCGTCCAGCACCAGCAGGATCTTGTGGCGCATTAGCTGCCGGTTCA
CTCTTGCCAGGCACTTCTCAAGGCCGCGCGACAAGCGCAGCTTCACCCAC
ATGCACAGGAAGATGGCCGCCGCGTTCAGGAATAGCCAGCCCACTCCCAG
GGCGAACAGGGCCACACCCTGCAGTCCGGAAAAGAGCAGGGCCAGCAAAA
CCGTAAATGCGAACAGGATCCAGCAGACCAGGATGCGCTTGTAGCAGATG
TTGTACACGGTGAAGCGGTAGTCGTTTACTAGCGTCTCCATCGCGTTCAC
ATAGTCCTCCACAGTGAGCGTCAGACCCTGAGCCATCAGCTCCTCGGGCA
CCAGTTCCGGACGGAATATGGCTGGGGTTATCCACGGCCACTTCGTGTTG
GCCGGCAGAAGTGTGACAATCACATCGCCATTTGCAAATCCCTCGCGTAT
ACCACCCGTTGACAATTCGATTGTGCGCAT
BO12360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18507-PA | 1545 | CG18507-RA | 631..1542 | 930..19 | 4485 | 99.6 | Minus |
CG18507-PB | 1542 | CG18507-RB | 631..1315 | 930..246 | 3350 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18507-RA | 1915 | CG18507-RA | 932..1843 | 930..19 | 4515 | 99.7 | Minus |
CG18507-RE | 2004 | CG18507-RE | 932..1645 | 930..217 | 3390 | 98.5 | Minus |
CG18507-RD | 2041 | CG18507-RD | 932..1645 | 930..217 | 3390 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13668863..13669386 | 769..246 | 2605 | 99.8 | Minus |
2L | 23513712 | 2L | 13669543..13669772 | 248..19 | 1150 | 100 | Minus |
2L | 23513712 | 2L | 13668689..13668805 | 885..769 | 585 | 100 | Minus |
2L | 23513712 | 2L | 13668308..13668351 | 930..887 | 205 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:26:59 has no hits.
BO12360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:36 Download gff for
BO12360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-PA | 631..1545 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:29 Download gff for
BO12360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-PA | 631..1545 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:09 Download gff for
BO12360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-RA | 932..1846 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:28:24 Download gff for
BO12360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-RA | 932..1846 | 15..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:28:24 Download gff for
BO12360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13668308..13668353 | 885..930 | 95 | -> | Minus |
2L | 13668690..13668805 | 769..884 | 100 | -> | Minus |
2L | 13668864..13669385 | 247..768 | 99 | -> | Minus |
2L | 13669545..13669775 | 15..246 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:09 Download gff for
BO12360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13668308..13668353 | 885..930 | 95 | -> | Minus |
arm_2L | 13668690..13668805 | 769..884 | 100 | -> | Minus |
arm_2L | 13668864..13669385 | 247..768 | 99 | -> | Minus |
arm_2L | 13669545..13669775 | 15..246 | 99 | | Minus |
BO12360.5prime Sequence
736 bp (697 high quality bases) assembled on 2006-04-20
> BO12360.5prime
GAAGTTATCAGTCGACATGGAGGACACAAAAGCTCCAGCGGCAGCGCAGG
CGCAAAGTCATCCTTTGGAGGATGTGTCCCTCAATGGGAACGATGACGAC
AAGCAGACGCCCAAAAATTGGGTTAAATTCGACGACGAAGCGGATAGCGG
TGAAAAAAACAATAACAGTAACGACGGCGATGCCACACAGCAGCAACAAC
AACAAAACAAGTTAACTCTGCCGCCACCGCCGTCGGTGGTTAGTAGCAAC
AACAACAGGAGGGCGCGCTCGCGCAGTCCGTCCGCTACAGTAACAACAAC
CACACCTGTCCAGCGCCCGGCAGTTTCCTCGACCACAGCTGCGACACCGG
GCGAAGTGCAGCCGCATGCCCCTCCGCCGGATGTGGCGCCCGCTGTTCTG
ACAACCGAGAGCACGCACGTTAATCTGAGTGCATCCGGCAGTGGCATCGT
CAGCGGAGCAAGTGCGAATGCAAGTGCGAGTGGATACGCACCTGGCCCGG
TCCGCCATACCCCGCAGCTACCAAACCAAAAAGCCGCCGCCGCCCCCTCT
CTATCGTCCGCTGGCGCGGCATCCTCCGGACATCAGCATAATGGAGGTGG
CGCCAACGGAACTGGAATTAGCCAGCCGGCGGACCAGGGATCCGGGATGC
GCACAATCGAATTGTCAACGGGTCGTATACGCGAGGGATTCGCAAATGGC
GATGTGATTGTCACACTTCTGCCGGCCAACACGAAG
BO12360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18507-PA | 1545 | CG18507-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
CG18507-PB | 1542 | CG18507-RB | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18507-RE | 2004 | CG18507-RE | 302..1021 | 17..736 | 3600 | 100 | Plus |
CG18507-RD | 2041 | CG18507-RD | 302..1021 | 17..736 | 3600 | 100 | Plus |
CG18507-RC | 2404 | CG18507-RC | 302..1021 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13667971..13668353 | 310..692 | 1915 | 100 | Plus |
2L | 23513712 | 2L | 13665826..13666122 | 17..313 | 1485 | 100 | Plus |
2L | 23513712 | 2L | 13668689..13668733 | 692..736 | 225 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1110..1169 | 158..218 | 131 | 72.6 | Plus |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2306..2338 | 67..99 | 120 | 84.8 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4358..4389 | 68..99 | 115 | 84.4 | Plus |
BO12360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:37 Download gff for
BO12360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-PA | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:30 Download gff for
BO12360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-PB | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:40 Download gff for
BO12360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-RC | 289..1021 | 5..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:46 Download gff for
BO12360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-RC | 289..1021 | 5..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:46 Download gff for
BO12360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13665813..13666122 | 5..313 | 98 | -> | Plus |
2L | 13667975..13668353 | 314..692 | 100 | -> | Plus |
2L | 13668690..13668733 | 693..736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:40 Download gff for
BO12360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13665813..13666122 | 5..313 | 98 | -> | Plus |
arm_2L | 13667975..13668353 | 314..692 | 100 | -> | Plus |
arm_2L | 13668690..13668733 | 693..736 | 100 | | Plus |
BO12360.complete Sequence
1576 bp assembled on 2007-06-22
GenBank Submission: FJ632415
> BO12360.complete
GAAGTTATCAGTCGACATGGAGGACACAAAAGCTCCAGCGGCAGCGCAGG
CGCAAAGTCATCCTTTGGAGGATGTGTCCCTCAATGGGAACGATGACGAC
AAGCAGACGCCCAAAAATTGGGTTAAATTCGACGACGAAGCGGATAGCGG
TGAAAAAAACAATAACAGTAACGACGGCGATGCCACACAGCAGCAACAAC
AACAAAACAAGTTAACTCTGCCGCCACCGCCGTCGGTGGTTAGTAGCAAC
AACAACAGGAGGGCGCGCTCGCGCAGTCCGTCCGCTACAGTAACAACAAC
CACACCTGTCCAGCGCCCGGCAGTTTCCTCGACCACAGCTGCGACACCGG
GCGAAGTGCAGCCGCATGCCCCTCCGCCGGATGTGGCGCCCGCTGTTCTG
ACAACCGAGAGCACGCACGTTAATCTGAGTGCATCCGGCAGTGGCATCGT
CAGCGGAGCAAGTGCGAATGCAAGTGCGAGTGGATACGCACCTGGCCCGG
TCCGCCATACCCCGCAGCTACCAAACCAAAAAGCCGCCGCCGCCCCCTCT
CTATCGTCCGCTGGCGCGGCATCCTCCGGACATCAGCATAATGGAGGTGG
CGCCAACGGAACTGGAATTAGCCAGCCGGCGGACCAGGGATCCGGGATGC
GCACAATCGAATTGTCAACGGGTCGTATACGCGAGGGATTCGCAAATGGC
GATGTGATTGTCACACTTCTGCCGGCCAACACGAAGTGGCCGTGGATAAC
CCCAGCCATATTCCGTCCGGAACTGGTGCCCGAGGAGCTGATGGCTCAGG
GTCTGACGCTCACTGTGGAGGACTATGTGAACGCGATGGAGACGCTAGTA
AACGACTACCGCTTCACCGTGTACAACATCTGCTACAAGCGCATCCTGGT
CTGCTGGATCCTGTTCGCATTTACGGTTTTGCTGGCCCTGCTCTTTTCCG
GACTGCAGGGTGTGGCCCTGTTCGCCCTGGGAGTGGGCTGGCTATTCCTG
AACGCGGCGGCCATCTTCCTGTGCATGTGGGTGAAGCTGCGCTTGTCGCG
CGGCCTTGAGAAGTGCCTGGCAAGAGTGAACCGGCAGCTAATGCGCCACA
AGATCCTGCTGGTGCTGGACGATCGGGGCCGCATCTCGTGCCACAAGGTC
AACCTGTGCTTCATGTACTTTGATGCCACACAGTGCGTTAATTTCCTGAA
CGAGTTCCTGGAGCATACGGAGCAAACTGGTGGCGATGCCATCAAGGCGG
GCTGGGAGGCGAAGCTGGACATTGACCTAAACGATATTGTTATCCAGGGC
AGTCAGCCGGTGCGAATGCCCCGCAAGCAGGCCGTGGCCCAGGAGCTGTT
TCTGAGCTACCTGCAGCGCTGGGGCAAGGACTTCCTGCGCCGCCGTCTGG
ATTGGACTGTCCAGGAGGCCGGCGTCCACGAGACGCCCCGCCATCTGCAA
TCGTCCATCTGTCCGTGCCAATACGAGGAGGAGTTGTTGCGCAACAAGAT
CAAGATCAGCCTGCAGCACCGCCACTGCTGCGGCATCAACTGCATGGGCT
GCTGGCTCGCAAGCTTTCTAGACCAT
BO12360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18507-RA | 1545 | CG18507-PA | 1..1542 | 17..1558 | 7695 | 99.9 | Plus |
CG18507-RE | 1533 | CG18507-PE | 1..1315 | 17..1331 | 6560 | 99.9 | Plus |
CG18507-RD | 1533 | CG18507-PD | 1..1315 | 17..1331 | 6560 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18507-RA | 1915 | CG18507-RA | 302..1843 | 17..1558 | 7695 | 99.9 | Plus |
CG18507-RE | 2004 | CG18507-RE | 302..1616 | 17..1331 | 6560 | 99.9 | Plus |
CG18507-RD | 2041 | CG18507-RD | 302..1616 | 17..1331 | 6560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13668863..13669386 | 808..1331 | 2605 | 99.8 | Plus |
2L | 23513712 | 2L | 13667971..13668353 | 310..692 | 1915 | 100 | Plus |
2L | 23513712 | 2L | 13665826..13666122 | 17..313 | 1485 | 100 | Plus |
2L | 23513712 | 2L | 13669543..13669772 | 1329..1558 | 1150 | 100 | Plus |
2L | 23513712 | 2L | 13668689..13668805 | 692..808 | 585 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2306..2338 | 67..99 | 120 | 84.8 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4358..4389 | 68..99 | 115 | 84.4 | Plus |
BO12360.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:16 Download gff for
BO12360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-RA | 1..1545 | 17..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:53 Download gff for
BO12360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-RA | 286..1843 | 5..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:55 Download gff for
BO12360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-RA | 302..1843 | 17..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:16 Download gff for
BO12360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-RA | 286..1843 | 5..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:29 Download gff for
BO12360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18507-RA | 302..1843 | 17..1560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:29 Download gff for
BO12360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13665826..13666122 | 17..313 | 100 | -> | Plus |
2L | 13667975..13668353 | 314..692 | 100 | -> | Plus |
2L | 13668690..13668805 | 693..808 | 100 | -> | Plus |
2L | 13668864..13669385 | 809..1330 | 99 | -> | Plus |
2L | 13669545..13669772 | 1331..1560 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:55 Download gff for
BO12360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13668690..13668805 | 693..808 | 100 | -> | Plus |
arm_2L | 13665826..13666122 | 17..313 | 100 | -> | Plus |
arm_2L | 13667975..13668353 | 314..692 | 100 | -> | Plus |
arm_2L | 13668864..13669385 | 809..1330 | 99 | -> | Plus |
arm_2L | 13669545..13669772 | 1331..1560 | 99 | | Plus |
BO12360.pep Sequence
Translation from 16 to 1576
> BO12360.pep
MEDTKAPAAAQAQSHPLEDVSLNGNDDDKQTPKNWVKFDDEADSGEKNNN
SNDGDATQQQQQQNKLTLPPPPSVVSSNNNRRARSRSPSATVTTTTPVQR
PAVSSTTAATPGEVQPHAPPPDVAPAVLTTESTHVNLSASGSGIVSGASA
NASASGYAPGPVRHTPQLPNQKAAAAPSLSSAGAASSGHQHNGGGANGTG
ISQPADQGSGMRTIELSTGRIREGFANGDVIVTLLPANTKWPWITPAIFR
PELVPEELMAQGLTLTVEDYVNAMETLVNDYRFTVYNICYKRILVCWILF
AFTVLLALLFSGLQGVALFALGVGWLFLNAAAIFLCMWVKLRLSRGLEKC
LARVNRQLMRHKILLVLDDRGRISCHKVNLCFMYFDATQCVNFLNEFLEH
TEQTGGDAIKAGWEAKLDIDLNDIVIQGSQPVRMPRKQAVAQELFLSYLQ
RWGKDFLRRRLDWTVQEAGVHETPRHLQSSICPCQYEEELLRNKIKISLQ
HRHCCGINCMGCWLASFLDH
BO12360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18507-PA | 514 | CG18507-PA | 1..514 | 1..514 | 2712 | 100 | Plus |
CG18507-PE | 510 | CG18507-PE | 1..494 | 1..499 | 2375 | 92.4 | Plus |
CG18507-PB | 513 | CG18507-PB | 1..499 | 1..507 | 2372 | 91.3 | Plus |
CG18507-PD | 510 | CG18507-PD | 1..489 | 1..494 | 2370 | 93.3 | Plus |
CG18507-PC | 499 | CG18507-PC | 1..489 | 1..494 | 2370 | 93.3 | Plus |