Clone BO12360 Report

Search the DGRC for BO12360

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG18507-RA
Protein status:BO12360.pep: validated full length
Sequenced Size:1576

Clone Sequence Records

BO12360.3prime Sequence

930 bp (772 high quality bases) assembled on 2006-04-20

> BO12360.3prime
ATGGTCTAGAAAGCTTGCGAGCCAGCAGCCCATGCAGTTGATGCCGCAGC
AGTGGCGGTGCTGCAGGCTGATCTTGATCTTGTTGCGCAACAACTCCTCC
TCGTATTGGCACGGACAGATGGACGATTGCAGATGGCGGGGCGTCTCGTG
GACGCCGGCCTCCTGGACAGTCCAATCCAGACGGCGGCGCAGGAAGTCCT
TGCCCCAGCGCTGCAGGTAGCTCAGAAACAGCTCCTGGGCCACGGCCTGC
TTGCGGGGCATTCGCACCGGCTGACTGCCCTGGATAACAATATCGTTTAG
GTCAATGTCCAGCTTCGCCTCCCAGCCCGCCTTGATGGCATCGCCACCAG
TTTGCTCCGTATGCTCCAGGAACTCGTTCAGGAAATTAACGCACTGTGTG
GCATCAAAGTACATGAAGCACAGGTTGACCTTGTGGCACGAGATGCGGCC
CCGATCGTCCAGCACCAGCAGGATCTTGTGGCGCATTAGCTGCCGGTTCA
CTCTTGCCAGGCACTTCTCAAGGCCGCGCGACAAGCGCAGCTTCACCCAC
ATGCACAGGAAGATGGCCGCCGCGTTCAGGAATAGCCAGCCCACTCCCAG
GGCGAACAGGGCCACACCCTGCAGTCCGGAAAAGAGCAGGGCCAGCAAAA
CCGTAAATGCGAACAGGATCCAGCAGACCAGGATGCGCTTGTAGCAGATG
TTGTACACGGTGAAGCGGTAGTCGTTTACTAGCGTCTCCATCGCGTTCAC
ATAGTCCTCCACAGTGAGCGTCAGACCCTGAGCCATCAGCTCCTCGGGCA
CCAGTTCCGGACGGAATATGGCTGGGGTTATCCACGGCCACTTCGTGTTG
GCCGGCAGAAGTGTGACAATCACATCGCCATTTGCAAATCCCTCGCGTAT
ACCACCCGTTGACAATTCGATTGTGCGCAT

BO12360.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG18507-PA 1545 CG18507-RA 631..1542 930..19 4485 99.6 Minus
CG18507-PB 1542 CG18507-RB 631..1315 930..246 3350 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG18507-RA 1915 CG18507-RA 932..1843 930..19 4515 99.7 Minus
CG18507-RE 2004 CG18507-RE 932..1645 930..217 3390 98.5 Minus
CG18507-RD 2041 CG18507-RD 932..1645 930..217 3390 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13668863..13669386 769..246 2605 99.8 Minus
2L 23513712 2L 13669543..13669772 248..19 1150 100 Minus
2L 23513712 2L 13668689..13668805 885..769 585 100 Minus
2L 23513712 2L 13668308..13668351 930..887 205 97.7 Minus
Blast to na_te.dros performed on 2015-02-08 13:26:59 has no hits.

BO12360.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:36 Download gff for BO12360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18507-PA 631..1545 15..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:29 Download gff for BO12360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18507-PA 631..1545 15..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:09 Download gff for BO12360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 932..1846 15..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:28:24 Download gff for BO12360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 932..1846 15..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:28:24 Download gff for BO12360.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13668308..13668353 885..930 95 -> Minus
2L 13668690..13668805 769..884 100 -> Minus
2L 13668864..13669385 247..768 99 -> Minus
2L 13669545..13669775 15..246 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:09 Download gff for BO12360.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13668308..13668353 885..930 95 -> Minus
arm_2L 13668690..13668805 769..884 100 -> Minus
arm_2L 13668864..13669385 247..768 99 -> Minus
arm_2L 13669545..13669775 15..246 99   Minus

BO12360.5prime Sequence

736 bp (697 high quality bases) assembled on 2006-04-20

> BO12360.5prime
GAAGTTATCAGTCGACATGGAGGACACAAAAGCTCCAGCGGCAGCGCAGG
CGCAAAGTCATCCTTTGGAGGATGTGTCCCTCAATGGGAACGATGACGAC
AAGCAGACGCCCAAAAATTGGGTTAAATTCGACGACGAAGCGGATAGCGG
TGAAAAAAACAATAACAGTAACGACGGCGATGCCACACAGCAGCAACAAC
AACAAAACAAGTTAACTCTGCCGCCACCGCCGTCGGTGGTTAGTAGCAAC
AACAACAGGAGGGCGCGCTCGCGCAGTCCGTCCGCTACAGTAACAACAAC
CACACCTGTCCAGCGCCCGGCAGTTTCCTCGACCACAGCTGCGACACCGG
GCGAAGTGCAGCCGCATGCCCCTCCGCCGGATGTGGCGCCCGCTGTTCTG
ACAACCGAGAGCACGCACGTTAATCTGAGTGCATCCGGCAGTGGCATCGT
CAGCGGAGCAAGTGCGAATGCAAGTGCGAGTGGATACGCACCTGGCCCGG
TCCGCCATACCCCGCAGCTACCAAACCAAAAAGCCGCCGCCGCCCCCTCT
CTATCGTCCGCTGGCGCGGCATCCTCCGGACATCAGCATAATGGAGGTGG
CGCCAACGGAACTGGAATTAGCCAGCCGGCGGACCAGGGATCCGGGATGC
GCACAATCGAATTGTCAACGGGTCGTATACGCGAGGGATTCGCAAATGGC
GATGTGATTGTCACACTTCTGCCGGCCAACACGAAG

BO12360.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18507-PA 1545 CG18507-RA 1..720 17..736 3600 100 Plus
CG18507-PB 1542 CG18507-RB 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18507-RE 2004 CG18507-RE 302..1021 17..736 3600 100 Plus
CG18507-RD 2041 CG18507-RD 302..1021 17..736 3600 100 Plus
CG18507-RC 2404 CG18507-RC 302..1021 17..736 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13667971..13668353 310..692 1915 100 Plus
2L 23513712 2L 13665826..13666122 17..313 1485 100 Plus
2L 23513712 2L 13668689..13668733 692..736 225 100 Plus
Blast to na_te.dros performed 2015-02-10 22:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1110..1169 158..218 131 72.6 Plus
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 2306..2338 67..99 120 84.8 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4358..4389 68..99 115 84.4 Plus

BO12360.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:37 Download gff for BO12360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18507-PA 1..720 17..736 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:30 Download gff for BO12360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18507-PB 1..720 17..736 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:40 Download gff for BO12360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18507-RC 289..1021 5..736 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:46 Download gff for BO12360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18507-RC 289..1021 5..736 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:46 Download gff for BO12360.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13665813..13666122 5..313 98 -> Plus
2L 13667975..13668353 314..692 100 -> Plus
2L 13668690..13668733 693..736 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:40 Download gff for BO12360.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13665813..13666122 5..313 98 -> Plus
arm_2L 13667975..13668353 314..692 100 -> Plus
arm_2L 13668690..13668733 693..736 100   Plus

BO12360.complete Sequence

1576 bp assembled on 2007-06-22

GenBank Submission: FJ632415

> BO12360.complete
GAAGTTATCAGTCGACATGGAGGACACAAAAGCTCCAGCGGCAGCGCAGG
CGCAAAGTCATCCTTTGGAGGATGTGTCCCTCAATGGGAACGATGACGAC
AAGCAGACGCCCAAAAATTGGGTTAAATTCGACGACGAAGCGGATAGCGG
TGAAAAAAACAATAACAGTAACGACGGCGATGCCACACAGCAGCAACAAC
AACAAAACAAGTTAACTCTGCCGCCACCGCCGTCGGTGGTTAGTAGCAAC
AACAACAGGAGGGCGCGCTCGCGCAGTCCGTCCGCTACAGTAACAACAAC
CACACCTGTCCAGCGCCCGGCAGTTTCCTCGACCACAGCTGCGACACCGG
GCGAAGTGCAGCCGCATGCCCCTCCGCCGGATGTGGCGCCCGCTGTTCTG
ACAACCGAGAGCACGCACGTTAATCTGAGTGCATCCGGCAGTGGCATCGT
CAGCGGAGCAAGTGCGAATGCAAGTGCGAGTGGATACGCACCTGGCCCGG
TCCGCCATACCCCGCAGCTACCAAACCAAAAAGCCGCCGCCGCCCCCTCT
CTATCGTCCGCTGGCGCGGCATCCTCCGGACATCAGCATAATGGAGGTGG
CGCCAACGGAACTGGAATTAGCCAGCCGGCGGACCAGGGATCCGGGATGC
GCACAATCGAATTGTCAACGGGTCGTATACGCGAGGGATTCGCAAATGGC
GATGTGATTGTCACACTTCTGCCGGCCAACACGAAGTGGCCGTGGATAAC
CCCAGCCATATTCCGTCCGGAACTGGTGCCCGAGGAGCTGATGGCTCAGG
GTCTGACGCTCACTGTGGAGGACTATGTGAACGCGATGGAGACGCTAGTA
AACGACTACCGCTTCACCGTGTACAACATCTGCTACAAGCGCATCCTGGT
CTGCTGGATCCTGTTCGCATTTACGGTTTTGCTGGCCCTGCTCTTTTCCG
GACTGCAGGGTGTGGCCCTGTTCGCCCTGGGAGTGGGCTGGCTATTCCTG
AACGCGGCGGCCATCTTCCTGTGCATGTGGGTGAAGCTGCGCTTGTCGCG
CGGCCTTGAGAAGTGCCTGGCAAGAGTGAACCGGCAGCTAATGCGCCACA
AGATCCTGCTGGTGCTGGACGATCGGGGCCGCATCTCGTGCCACAAGGTC
AACCTGTGCTTCATGTACTTTGATGCCACACAGTGCGTTAATTTCCTGAA
CGAGTTCCTGGAGCATACGGAGCAAACTGGTGGCGATGCCATCAAGGCGG
GCTGGGAGGCGAAGCTGGACATTGACCTAAACGATATTGTTATCCAGGGC
AGTCAGCCGGTGCGAATGCCCCGCAAGCAGGCCGTGGCCCAGGAGCTGTT
TCTGAGCTACCTGCAGCGCTGGGGCAAGGACTTCCTGCGCCGCCGTCTGG
ATTGGACTGTCCAGGAGGCCGGCGTCCACGAGACGCCCCGCCATCTGCAA
TCGTCCATCTGTCCGTGCCAATACGAGGAGGAGTTGTTGCGCAACAAGAT
CAAGATCAGCCTGCAGCACCGCCACTGCTGCGGCATCAACTGCATGGGCT
GCTGGCTCGCAAGCTTTCTAGACCAT

BO12360.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18507-RA 1545 CG18507-PA 1..1542 17..1558 7695 99.9 Plus
CG18507-RE 1533 CG18507-PE 1..1315 17..1331 6560 99.9 Plus
CG18507-RD 1533 CG18507-PD 1..1315 17..1331 6560 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG18507-RA 1915 CG18507-RA 302..1843 17..1558 7695 99.9 Plus
CG18507-RE 2004 CG18507-RE 302..1616 17..1331 6560 99.9 Plus
CG18507-RD 2041 CG18507-RD 302..1616 17..1331 6560 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13668863..13669386 808..1331 2605 99.8 Plus
2L 23513712 2L 13667971..13668353 310..692 1915 100 Plus
2L 23513712 2L 13665826..13666122 17..313 1485 100 Plus
2L 23513712 2L 13669543..13669772 1329..1558 1150 100 Plus
2L 23513712 2L 13668689..13668805 692..808 585 100 Plus
Blast to na_te.dros performed 2014-11-27 08:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 2306..2338 67..99 120 84.8 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4358..4389 68..99 115 84.4 Plus

BO12360.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:16 Download gff for BO12360.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 1..1545 17..1562 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:53 Download gff for BO12360.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 286..1843 5..1562 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:55 Download gff for BO12360.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 302..1843 17..1560 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:16 Download gff for BO12360.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 286..1843 5..1562 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:29 Download gff for BO12360.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 302..1843 17..1560 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:29 Download gff for BO12360.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13665826..13666122 17..313 100 -> Plus
2L 13667975..13668353 314..692 100 -> Plus
2L 13668690..13668805 693..808 100 -> Plus
2L 13668864..13669385 809..1330 99 -> Plus
2L 13669545..13669772 1331..1560 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:55 Download gff for BO12360.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13668690..13668805 693..808 100 -> Plus
arm_2L 13665826..13666122 17..313 100 -> Plus
arm_2L 13667975..13668353 314..692 100 -> Plus
arm_2L 13668864..13669385 809..1330 99 -> Plus
arm_2L 13669545..13669772 1331..1560 99   Plus

BO12360.pep Sequence

Translation from 16 to 1576

> BO12360.pep
MEDTKAPAAAQAQSHPLEDVSLNGNDDDKQTPKNWVKFDDEADSGEKNNN
SNDGDATQQQQQQNKLTLPPPPSVVSSNNNRRARSRSPSATVTTTTPVQR
PAVSSTTAATPGEVQPHAPPPDVAPAVLTTESTHVNLSASGSGIVSGASA
NASASGYAPGPVRHTPQLPNQKAAAAPSLSSAGAASSGHQHNGGGANGTG
ISQPADQGSGMRTIELSTGRIREGFANGDVIVTLLPANTKWPWITPAIFR
PELVPEELMAQGLTLTVEDYVNAMETLVNDYRFTVYNICYKRILVCWILF
AFTVLLALLFSGLQGVALFALGVGWLFLNAAAIFLCMWVKLRLSRGLEKC
LARVNRQLMRHKILLVLDDRGRISCHKVNLCFMYFDATQCVNFLNEFLEH
TEQTGGDAIKAGWEAKLDIDLNDIVIQGSQPVRMPRKQAVAQELFLSYLQ
RWGKDFLRRRLDWTVQEAGVHETPRHLQSSICPCQYEEELLRNKIKISLQ
HRHCCGINCMGCWLASFLDH

BO12360.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG18507-PA 514 CG18507-PA 1..514 1..514 2712 100 Plus
CG18507-PE 510 CG18507-PE 1..494 1..499 2375 92.4 Plus
CG18507-PB 513 CG18507-PB 1..499 1..507 2372 91.3 Plus
CG18507-PD 510 CG18507-PD 1..489 1..494 2370 93.3 Plus
CG18507-PC 499 CG18507-PC 1..489 1..494 2370 93.3 Plus