Clone Sequence Records
BO12362.3prime Sequence
404 bp (403 high quality bases) assembled on 2006-04-20
> BO12362.3prime
ATGGTCTAGAAAGCTTGCATTAACGCCCTGGATGAATTTTGAGAGGAAGT
CGGTGGGCTTGGGATCCTGCGATTCTTTCCAGTAGCGCATGATATGGCCC
TTCTGCTTCCAGATCTCCACGGATTCCTTAAGCTCCATTTGGCCCTTGAT
GACCAGCATGTCGATCACCCGGATGTCGGTCACATTGCGATGCTTGACGA
ACTCCTCGCGCAGCTTGTCCCGACACTGCTCCACGGTCATGGGGATGTCG
TAGTCCATGACGATGTAGGGAATCTGGCGGTACCAGGCCTTGTACAGATT
GAGGGCACGCTTACGGGCCTCCTCGCGGTCCACGGACAGGATGGGGCGCA
CCTGCTGTACGGCTCGCTTCACGGCTTCACGTCCGGCCATGTCGACTGAT
AACT
BO12362.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7712-PA | 375 | CG7712-RA | 1..372 | 390..19 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7712-RB | 612 | CG7712-RB | 93..464 | 390..19 | 1860 | 100 | Minus |
CG7712-RA | 542 | CG7712-RA | 93..464 | 390..19 | 1860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10897664..10897793 | 261..390 | 650 | 100 | Plus |
2R | 25286936 | 2R | 10897292..10897419 | 19..146 | 640 | 100 | Plus |
2R | 25286936 | 2R | 10897471..10897588 | 144..261 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:54:27 has no hits.
BO12362.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:40 Download gff for
BO12362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-PA | 1..375 | 18..390 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:34 Download gff for
BO12362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-PA | 1..375 | 18..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:36 Download gff for
BO12362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-RA | 89..469 | 11..395 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:50:28 Download gff for
BO12362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-RA | 89..469 | 11..395 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:50:28 Download gff for
BO12362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10897287..10897417 | 11..144 | 97 | <- | Plus |
2R | 10897472..10897587 | 145..260 | 100 | <- | Plus |
2R | 10897664..10897797 | 261..395 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:36 Download gff for
BO12362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6784792..6784922 | 11..144 | 97 | <- | Plus |
arm_2R | 6784977..6785092 | 145..260 | 100 | <- | Plus |
arm_2R | 6785169..6785302 | 261..395 | 98 | | Plus |
BO12362.5prime Sequence
404 bp (403 high quality bases) assembled on 2006-04-20
> BO12362.5prime
GAAGTTATCAGTCGACATGGCCGGACGTGAAGCCGTGAAGCGAGCCGTAC
AGCAGGTGCGCCCCATCCTGTCCGTGGACCGCGAGGAGGCCCGTAAGCGT
GCCCTCAATCTGTACAAGGCCTGGTACCGCCAGATTCCCTACATCGTCAT
GGACTACGACATCCCCATGACCGTGGAGCAGTGTCGGGACAAGCTGCGCG
AGGAGTTCGTCAAGCATCGCAATGTGACCGACATCCGGGTGATCGACATG
CTGGTCATCAAGGGCCAAATGGAGCTTAAGGAATCCGTGGAGATCTGGAA
GCAGAAGGGCCATATCATGCGCTACTGGAAAGAATCGCAGGATCCCAAGC
CCACCGACTTCCTCTCAAAATTCATCCAGGGCGTTAATGCAAGCTTTCTA
GACC
BO12362.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7712-PA | 375 | CG7712-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7712-RB | 612 | CG7712-RB | 93..464 | 17..388 | 1860 | 100 | Plus |
CG7712-RA | 542 | CG7712-RA | 93..464 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10897664..10897793 | 146..17 | 650 | 100 | Minus |
2R | 25286936 | 2R | 10897292..10897419 | 388..261 | 640 | 100 | Minus |
2R | 25286936 | 2R | 10897471..10897588 | 263..146 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:32:06 has no hits.
BO12362.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:41 Download gff for
BO12362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-PA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:35 Download gff for
BO12362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-PA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:04 Download gff for
BO12362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-RA | 89..469 | 12..396 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:47 Download gff for
BO12362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-RA | 89..469 | 12..396 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:47 Download gff for
BO12362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10897287..10897417 | 263..396 | 97 | <- | Minus |
2R | 10897472..10897587 | 147..262 | 100 | <- | Minus |
2R | 10897664..10897797 | 12..146 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:04 Download gff for
BO12362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6784792..6784922 | 263..396 | 97 | <- | Minus |
arm_2R | 6784977..6785092 | 147..262 | 100 | <- | Minus |
arm_2R | 6785169..6785302 | 12..146 | 98 | | Minus |
BO12362.complete Sequence
406 bp assembled on 2007-10-17
GenBank Submission: FJ632416
> BO12362.complete
GAAGTTATCAGTCGACATGGCCGGACGTGAAGCCGTGAAGCGAGCCGTAC
AGCAGGTGCGCCCCATCCTGTCCGTGGACCGCGAGGAGGCCCGTAAGCGT
GCCCTCAATCTGTACAAGGCCTGGTACCGCCAGATTCCCTACATCGTCAT
GGACTACGACATCCCCATGACCGTGGAGCAGTGTCGGGACAAGCTGCGCG
AGGAGTTCGTCAAGCATCGCAATGTGACCGACATCCGGGTGATCGACATG
CTGGTCATCAAGGGCCAAATGGAGCTTAAGGAATCCGTGGAGATCTGGAA
GCAGAAGGGCCATATCATGCGCTACTGGAAAGAATCGCAGGATCCCAAGC
CCACCGACTTCCTCTCAAAATTCATCCAGGGCGTTAATGCAAGCTTTCTA
GACCAT
BO12362.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7712-RB | 375 | CG7712-PB | 1..372 | 17..388 | 1860 | 100 | Plus |
CG7712-RA | 375 | CG7712-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7712-RB | 612 | CG7712-RB | 93..464 | 17..388 | 1860 | 100 | Plus |
CG7712-RA | 542 | CG7712-RA | 93..464 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10897664..10897793 | 146..17 | 650 | 100 | Minus |
2R | 25286936 | 2R | 10897292..10897419 | 388..261 | 640 | 100 | Minus |
2R | 25286936 | 2R | 10897471..10897588 | 263..146 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:54:21 has no hits.
BO12362.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:24 Download gff for
BO12362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-RA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:34 Download gff for
BO12362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-RA | 87..467 | 12..396 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:12 Download gff for
BO12362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-RA | 93..464 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:32 Download gff for
BO12362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-RA | 91..462 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:52 Download gff for
BO12362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7712-RA | 93..464 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:52 Download gff for
BO12362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10897290..10897417 | 263..390 | 98 | <- | Minus |
2R | 10897472..10897587 | 147..262 | 100 | <- | Minus |
2R | 10897664..10897793 | 17..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:12 Download gff for
BO12362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6784795..6784922 | 263..390 | 98 | <- | Minus |
arm_2R | 6784977..6785092 | 147..262 | 100 | <- | Minus |
arm_2R | 6785169..6785298 | 17..146 | 100 | | Minus |
BO12362.pep Sequence
Translation from 16 to 406
> BO12362.pep
MAGREAVKRAVQQVRPILSVDREEARKRALNLYKAWYRQIPYIVMDYDIP
MTVEQCRDKLREEFVKHRNVTDIRVIDMLVIKGQMELKESVEIWKQKGHI
MRYWKESQDPKPTDFLSKFIQGVNASFLDH
BO12362.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7712-PB | 124 | CG7712-PB | 1..124 | 1..124 | 647 | 100 | Plus |
CG7712-PA | 124 | CG7712-PA | 1..124 | 1..124 | 647 | 100 | Plus |