Clone BO12362 Report

Search the DGRC for BO12362

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG7712-RA
Protein status:BO12362.pep: validated full length
Sequenced Size:406

Clone Sequence Records

BO12362.3prime Sequence

404 bp (403 high quality bases) assembled on 2006-04-20

> BO12362.3prime
ATGGTCTAGAAAGCTTGCATTAACGCCCTGGATGAATTTTGAGAGGAAGT
CGGTGGGCTTGGGATCCTGCGATTCTTTCCAGTAGCGCATGATATGGCCC
TTCTGCTTCCAGATCTCCACGGATTCCTTAAGCTCCATTTGGCCCTTGAT
GACCAGCATGTCGATCACCCGGATGTCGGTCACATTGCGATGCTTGACGA
ACTCCTCGCGCAGCTTGTCCCGACACTGCTCCACGGTCATGGGGATGTCG
TAGTCCATGACGATGTAGGGAATCTGGCGGTACCAGGCCTTGTACAGATT
GAGGGCACGCTTACGGGCCTCCTCGCGGTCCACGGACAGGATGGGGCGCA
CCTGCTGTACGGCTCGCTTCACGGCTTCACGTCCGGCCATGTCGACTGAT
AACT

BO12362.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7712-PA 375 CG7712-RA 1..372 390..19 1860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7712-RB 612 CG7712-RB 93..464 390..19 1860 100 Minus
CG7712-RA 542 CG7712-RA 93..464 390..19 1860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10897664..10897793 261..390 650 100 Plus
2R 25286936 2R 10897292..10897419 19..146 640 100 Plus
2R 25286936 2R 10897471..10897588 144..261 590 100 Plus
Blast to na_te.dros performed on 2015-02-01 04:54:27 has no hits.

BO12362.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:40 Download gff for BO12362.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7712-PA 1..375 18..390 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:34 Download gff for BO12362.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7712-PA 1..375 18..390 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:36 Download gff for BO12362.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7712-RA 89..469 11..395 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:50:28 Download gff for BO12362.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7712-RA 89..469 11..395 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:50:28 Download gff for BO12362.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10897287..10897417 11..144 97 <- Plus
2R 10897472..10897587 145..260 100 <- Plus
2R 10897664..10897797 261..395 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:36 Download gff for BO12362.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6784792..6784922 11..144 97 <- Plus
arm_2R 6784977..6785092 145..260 100 <- Plus
arm_2R 6785169..6785302 261..395 98   Plus

BO12362.5prime Sequence

404 bp (403 high quality bases) assembled on 2006-04-20

> BO12362.5prime
GAAGTTATCAGTCGACATGGCCGGACGTGAAGCCGTGAAGCGAGCCGTAC
AGCAGGTGCGCCCCATCCTGTCCGTGGACCGCGAGGAGGCCCGTAAGCGT
GCCCTCAATCTGTACAAGGCCTGGTACCGCCAGATTCCCTACATCGTCAT
GGACTACGACATCCCCATGACCGTGGAGCAGTGTCGGGACAAGCTGCGCG
AGGAGTTCGTCAAGCATCGCAATGTGACCGACATCCGGGTGATCGACATG
CTGGTCATCAAGGGCCAAATGGAGCTTAAGGAATCCGTGGAGATCTGGAA
GCAGAAGGGCCATATCATGCGCTACTGGAAAGAATCGCAGGATCCCAAGC
CCACCGACTTCCTCTCAAAATTCATCCAGGGCGTTAATGCAAGCTTTCTA
GACC

BO12362.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7712-PA 375 CG7712-RA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7712-RB 612 CG7712-RB 93..464 17..388 1860 100 Plus
CG7712-RA 542 CG7712-RA 93..464 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10897664..10897793 146..17 650 100 Minus
2R 25286936 2R 10897292..10897419 388..261 640 100 Minus
2R 25286936 2R 10897471..10897588 263..146 590 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:32:06 has no hits.

BO12362.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:41 Download gff for BO12362.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7712-PA 1..375 17..389 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:35 Download gff for BO12362.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7712-PA 1..375 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:04 Download gff for BO12362.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7712-RA 89..469 12..396 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:47 Download gff for BO12362.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7712-RA 89..469 12..396 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:47 Download gff for BO12362.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10897287..10897417 263..396 97 <- Minus
2R 10897472..10897587 147..262 100 <- Minus
2R 10897664..10897797 12..146 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:04 Download gff for BO12362.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6784792..6784922 263..396 97 <- Minus
arm_2R 6784977..6785092 147..262 100 <- Minus
arm_2R 6785169..6785302 12..146 98   Minus

BO12362.complete Sequence

406 bp assembled on 2007-10-17

GenBank Submission: FJ632416

> BO12362.complete
GAAGTTATCAGTCGACATGGCCGGACGTGAAGCCGTGAAGCGAGCCGTAC
AGCAGGTGCGCCCCATCCTGTCCGTGGACCGCGAGGAGGCCCGTAAGCGT
GCCCTCAATCTGTACAAGGCCTGGTACCGCCAGATTCCCTACATCGTCAT
GGACTACGACATCCCCATGACCGTGGAGCAGTGTCGGGACAAGCTGCGCG
AGGAGTTCGTCAAGCATCGCAATGTGACCGACATCCGGGTGATCGACATG
CTGGTCATCAAGGGCCAAATGGAGCTTAAGGAATCCGTGGAGATCTGGAA
GCAGAAGGGCCATATCATGCGCTACTGGAAAGAATCGCAGGATCCCAAGC
CCACCGACTTCCTCTCAAAATTCATCCAGGGCGTTAATGCAAGCTTTCTA
GACCAT

BO12362.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7712-RB 375 CG7712-PB 1..372 17..388 1860 100 Plus
CG7712-RA 375 CG7712-PA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7712-RB 612 CG7712-RB 93..464 17..388 1860 100 Plus
CG7712-RA 542 CG7712-RA 93..464 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10897664..10897793 146..17 650 100 Minus
2R 25286936 2R 10897292..10897419 388..261 640 100 Minus
2R 25286936 2R 10897471..10897588 263..146 590 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:54:21 has no hits.

BO12362.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:24 Download gff for BO12362.complete
Subject Subject Range Query Range Percent Splice Strand
CG7712-RA 1..375 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:34 Download gff for BO12362.complete
Subject Subject Range Query Range Percent Splice Strand
CG7712-RA 87..467 12..396 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:12 Download gff for BO12362.complete
Subject Subject Range Query Range Percent Splice Strand
CG7712-RA 93..464 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:32 Download gff for BO12362.complete
Subject Subject Range Query Range Percent Splice Strand
CG7712-RA 91..462 17..390 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:52 Download gff for BO12362.complete
Subject Subject Range Query Range Percent Splice Strand
CG7712-RA 93..464 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:52 Download gff for BO12362.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10897290..10897417 263..390 98 <- Minus
2R 10897472..10897587 147..262 100 <- Minus
2R 10897664..10897793 17..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:12 Download gff for BO12362.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6784795..6784922 263..390 98 <- Minus
arm_2R 6784977..6785092 147..262 100 <- Minus
arm_2R 6785169..6785298 17..146 100   Minus

BO12362.pep Sequence

Translation from 16 to 406

> BO12362.pep
MAGREAVKRAVQQVRPILSVDREEARKRALNLYKAWYRQIPYIVMDYDIP
MTVEQCRDKLREEFVKHRNVTDIRVIDMLVIKGQMELKESVEIWKQKGHI
MRYWKESQDPKPTDFLSKFIQGVNASFLDH

BO12362.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7712-PB 124 CG7712-PB 1..124 1..124 647 100 Plus
CG7712-PA 124 CG7712-PA 1..124 1..124 647 100 Plus