Clone Sequence Records
BO12369.3prime Sequence
563 bp (562 high quality bases) assembled on 2006-04-20
> BO12369.3prime
ATGGTCTAGAAAGCTTGCCTGGAAGTAGGTCCTGGGCTTCCTGAACGAGA
ACAGTTTCCTGTTGCCCTTGTGGTGGACACGCTGGACCAGAGGGAACTTG
ATCTTTGAATCGTGGAACTGCTTCACGTGCACGCGGCGGGTCTTGGCGGC
AGGGATCGAGTCCACCTTAATGATCTGGATGGAGTGGGCACGGGCACGGT
GGCGGGCTCCCATGTCGCGGTAGCACTGAGTGACGGCACCGCCGACAGTC
AGGTCACGGTACTCGCGGTACATGTTGTGGGTGCCCGAGCGGGAATCGTA
ACGCAGCCAGATGCCGAAGTTCTTGATCTTCACGGGCGACGTCTCGTACA
CCTGCTTGATGGACACGATCTCGCCGGTGGTCTTCTTGAACTTCTTCAGT
TGGCGCAGGAAGTACCAGAAGCGGGATTTGGCCACGATGTTGTCGGGGGC
AAAGATGCGCATCTTGTAGAGGGGAGTCTGGGGCTCCTTCTCGCTGGGCA
GCTTGCGGCCCACGACCTCGTACTCCTTCAACAATCCCTTGGCTCTCATG
TCGACTGATAACT
BO12369.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6510-PA | 534 | RpL18A-RA | 1..531 | 549..19 | 2655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18A-RA | 635 | CG6510-RA | 35..567 | 551..19 | 2665 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17546474..17546987 | 19..532 | 2570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:15:42 has no hits.
BO12369.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:52 Download gff for
BO12369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6510-PA | 1..534 | 18..549 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:53 Download gff for
BO12369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6510-PA | 1..534 | 18..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:44:18 Download gff for
BO12369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 35..574 | 11..551 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:00 Download gff for
BO12369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 35..574 | 11..551 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:00 Download gff for
BO12369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17546467..17546986 | 11..531 | 99 | <- | Plus |
| 2R | 17547409..17547428 | 532..551 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:44:18 Download gff for
BO12369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13433972..13434491 | 11..531 | 99 | <- | Plus |
| arm_2R | 13434914..13434933 | 532..551 | 100 | | Plus |
BO12369.5prime Sequence
563 bp (562 high quality bases) assembled on 2006-04-20
> BO12369.5prime
GAAGTTATCAGTCGACATGAGAGCCAAGGGATTGTTGAAGGAGTACGAGG
TCGTGGGCCGCAAGCTGCCCAGCGAGAAGGAGCCCCAGACTCCCCTCTAC
AAGATGCGCATCTTTGCCCCCGACAACATCGTGGCCAAATCCCGCTTCTG
GTACTTCCTGCGCCAACTGAAGAAGTTCAAGAAGACCACCGGCGAGATCG
TGTCCATCAAGCAGGTGTACGAGACGTCGCCCGTGAAGATCAAGAACTTC
GGCATCTGGCTGCGTTACGATTCCCGCTCGGGCACCCACAACATGTACCG
CGAGTACCGTGACCTGACTGTCGGCGGTGCCGTCACTCAGTGCTACCGCG
ACATGGGAGCCCGCCACCGTGCCCGTGCCCACTCCATCCAGATCATTAAG
GTGGACTCGATCCCTGCCGCCAAGACCCGCCGCGTGCACGTGAAGCAGTT
CCACGATTCAAAGATCAAGTTCCCTCTGGTCCAGCGTGTCCACCACAAGG
GCAACAGGAAACTGTTCTCGTTCAGGAAGCCCAGGACCTACTTCCAGGCA
AGCTTTCTAGACC
BO12369.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6510-PA | 534 | RpL18A-RA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18A-RA | 635 | CG6510-RA | 35..567 | 15..547 | 2665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17546474..17546987 | 547..34 | 2570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:38:21 has no hits.
BO12369.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:53 Download gff for
BO12369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6510-PA | 1..534 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:54 Download gff for
BO12369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6510-PA | 1..534 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:46:56 Download gff for
BO12369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 35..574 | 15..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:27 Download gff for
BO12369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 35..574 | 15..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:27 Download gff for
BO12369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17546467..17546986 | 35..555 | 99 | <- | Minus |
| 2R | 17547409..17547428 | 15..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:46:56 Download gff for
BO12369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13433972..13434491 | 35..555 | 99 | <- | Minus |
| arm_2R | 13434914..13434933 | 15..34 | 100 | | Minus |
BO12369.complete Sequence
565 bp assembled on 2006-10-11
GenBank Submission: FJ632417
> BO12369.complete
GAAGTTATCAGTCGACATGAGAGCCAAGGGATTGTTGAAGGAGTACGAGG
TCGTGGGCCGCAAGCTGCCCAGCGAGAAGGAGCCCCAGACTCCCCTCTAC
AAGATGCGCATCTTTGCCCCCGACAACATCGTGGCCAAATCCCGCTTCTG
GTACTTCCTGCGCCAACTGAAGAAGTTCAAGAAGACCACCGGCGAGATCG
TGTCCATCAAGCAGGTGTACGAGACGTCGCCCGTGAAGATCAAGAACTTC
GGCATCTGGCTGCGTTACGATTCCCGCTCGGGCACCCACAACATGTACCG
CGAGTACCGTGACCTGACTGTCGGCGGTGCCGTCACTCAGTGCTACCGCG
ACATGGGAGCCCGCCACCGTGCCCGTGCCCACTCCATCCAGATCATTAAG
GTGGACTCGATCCCTGCCGCCAAGACCCGCCGCGTGCACGTGAAGCAGTT
CCACGATTCAAAGATCAAGTTCCCTCTGGTCCAGCGTGTCCACCACAAGG
GCAACAGGAAACTGTTCTCGTTCAGGAAGCCCAGGACCTACTTCCAGGCA
AGCTTTCTAGACCAT
BO12369.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18A-RA | 534 | CG6510-PA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18A-RA | 635 | CG6510-RA | 35..567 | 15..547 | 2665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17546474..17546987 | 547..34 | 2570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:58:14 has no hits.
BO12369.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:17 Download gff for
BO12369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 1..534 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:40 Download gff for
BO12369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 67..606 | 15..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:13 Download gff for
BO12369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 37..567 | 17..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:17 Download gff for
BO12369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 67..606 | 15..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:13 Download gff for
BO12369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18A-RA | 37..567 | 17..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:13 Download gff for
BO12369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17546472..17546986 | 35..549 | 99 | <- | Minus |
| 2R | 17547409..17547426 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:13 Download gff for
BO12369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13433977..13434491 | 35..549 | 99 | <- | Minus |
| arm_2R | 13434914..13434931 | 17..34 | 100 | | Minus |
BO12369.pep Sequence
Translation from 16 to 565
> BO12369.pep
MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQ
LKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDL
TVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKI
KFPLVQRVHHKGNRKLFSFRKPRTYFQASFLDH
BO12369.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18A-PA | 177 | CG6510-PA | 1..177 | 1..177 | 932 | 100 | Plus |
