Clone Sequence Records
BO12371.3prime Sequence
752 bp (751 high quality bases) assembled on 2006-04-20
> BO12371.3prime
ATGGTCTAGAAAGCTTGCTGATTGCCGGCACTGATCCTGCTCCTCGCGCA
GATAGTCGCCGATGTGCTGCACCACCATGGCACTGCACAGCTGAGCCTGC
ACCACTTGATCCTCGGCGGTCTGGTGGGTCTGCACCAGGATTAGGGATGC
ATTGTGCATGGATTGGGCCATCCCCAGATTGATTTCCGCCATCGCGTTAA
TGAAACAGACACTTCCGCCAGCTGAAGCTAGAGGATTAAGCGGGGAAGCC
CCCAGCAATTGGCACTTGGCCGGCAAGTGGGCAATCTGCTGTACGAATTC
CTGTACTCTGGCCAAAGCCAGTTGACTCTCCAGACGGAAGTCTTCCAAAA
GGCTTCCCAAGTCTTCCGTACACCCACCCAGCTGATGGGTCACATTTTCA
TTGAGCTCATCCAGGCTCCAGGCTGGGTTGCAATCGGGATTGGACACCAC
TAACTGGTTTGTCTCATAGATCACATCACTTAGTTCGGCCATAGCATTGG
CGGTCAGGACCTCAATGTTACCGGCAATATTTTGCCGAGTGCGATTTATT
TTCTCCTCCAACTGAATGGAGGTGTCGTCGCTGACACTTACGGCAATCTC
TGCCAGATTGTCCACAACCATGGTAACAGGTCCATAGTTTGTAGTCTCTG
TCTCCATCTTTGTTTCATAGCCGACTTCTTGGCAGTCTGCCAAAGTCAGC
AAAAGCAGAGCAAGTACTCCCAGAGTTTGACTCATCATGTCGACTGATAA
CT
BO12371.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-PA | 723 | CG11672-RA | 1..720 | 738..19 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-RB | 969 | CG11672-RB | 31..750 | 738..19 | 3600 | 100 | Minus |
CG11672-RA | 1122 | CG11672-RA | 31..750 | 738..19 | 3600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8289767..8290435 | 19..687 | 3345 | 100 | Plus |
3R | 32079331 | 3R | 8290497..8290548 | 687..738 | 260 | 100 | Plus |
Blast to na_te.dros performed 2015-02-08 13:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 2543..2567 | 414..390 | 107 | 92 | Minus |
BO12371.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:56 Download gff for
BO12371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-PA | 1..723 | 18..738 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:59 Download gff for
BO12371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-PA | 1..723 | 18..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:06 Download gff for
BO12371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 24..750 | 19..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:28:23 Download gff for
BO12371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 24..750 | 19..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:28:23 Download gff for
BO12371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8289767..8290435 | 19..687 | 100 | <- | Plus |
3R | 8290498..8290555 | 688..746 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:06 Download gff for
BO12371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4115489..4116157 | 19..687 | 100 | <- | Plus |
arm_3R | 4116220..4116277 | 688..746 | 93 | | Plus |
BO12371.5prime Sequence
752 bp (751 high quality bases) assembled on 2006-04-20
> BO12371.5prime
GAAGTTATCAGTCGACATGATGAGTCAAACTCTGGGAGTACTTGCTCTGC
TTTTGCTGACTTTGGCAGACTGCCAAGAAGTCGGCTATGAAACAAAGATG
GAGACAGAGACTACAAACTATGGACCTGTTACCATGGTTGTGGACAATCT
GGCAGAGATTGCCGTAAGTGTCAGCGACGACACCTCCATTCAGTTGGAGG
AGAAAATAAATCGCACTCGGCAAAATATTGCCGGTAACATTGAGGTCCTG
ACCGCCAATGCTATGGCCGAACTAAGTGATGTGATCTATGAGACAAACCA
GTTAGTGGTGTCCAATCCCGATTGCAACCCAGCCTGGAGCCTGGATGAGC
TCAATGAAAATGTGACCCATCAGCTGGGTGGGTGTACGGAAGACTTGGGA
AGCCTTTTGGAAGACTTCCGTCTGGAGAGTCAACTGGCTTTGGCCAGAGT
ACAGGAATTCGTACAGCAGATTGCCCACTTGCCGGCCAAGTGCCAATTGC
TGGGGGCTTCCCCGCTTAATCCTCTAGCTTCAGCTGGCGGAAGTGTCTGT
TTCATTAACGCGATGGCGGAAATCAATCTGGGGATGGCCCAATCCATGCA
CAATGCATCCCTAATCCTGGTGCAGACCCACCAGACCGCCGAGGATCAAG
TGGTGCAGGCTCAGCTGTGCAGTGCCATGGTGGTGCAGCACATCGGCGAC
TATCTGCGCGAGGAGCAGGATCAGTGCCGGCAATCAGCAAGCTTTCTAGA
CC
BO12371.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-PA | 723 | CG11672-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-RB | 969 | CG11672-RB | 31..750 | 17..736 | 3600 | 100 | Plus |
CG11672-RA | 1122 | CG11672-RA | 31..750 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:41:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8289767..8290435 | 736..68 | 3345 | 100 | Minus |
3R | 32079331 | 3R | 8290497..8290548 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 12:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 2543..2567 | 341..365 | 107 | 92 | Plus |
BO12371.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:57 Download gff for
BO12371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-PA | 1..723 | 17..737 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:00 Download gff for
BO12371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-PA | 1..723 | 17..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:12:01 Download gff for
BO12371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 24..750 | 9..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:41 Download gff for
BO12371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 24..750 | 9..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:41 Download gff for
BO12371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8289767..8290435 | 68..736 | 100 | <- | Minus |
3R | 8290498..8290555 | 9..67 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:12:01 Download gff for
BO12371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4115489..4116157 | 68..736 | 100 | <- | Minus |
arm_3R | 4116220..4116277 | 9..67 | 93 | | Minus |
BO12371.complete Sequence
754 bp assembled on 2006-10-11
GenBank Submission: FJ632419
> BO12371.complete
GAAGTTATCAGTCGACATGATGAGTCAAACTCTGGGAGTACTTGCTCTGC
TTTTGCTGACTTTGGCAGACTGCCAAGAAGTCGGCTATGAAACAAAGATG
GAGACAGAGACTACAAACTATGGACCTGTTACCATGGTTGTGGACAATCT
GGCAGAGATTGCCGTAAGTGTCAGCGACGACACCTCCATTCAGTTGGAGG
AGAAAATAAATCGCACTCGGCAAAATATTGCCGGTAACATTGAGGTCCTG
ACCGCCAATGCTATGGCCGAACTAAGTGATGTGATCTATGAGACAAACCA
GTTAGTGGTGTCCAATCCCGATTGCAACCCAGCCTGGAGCCTGGATGAGC
TCAATGAAAATGTGACCCATCAGCTGGGTGGGTGTACGGAAGACTTGGGA
AGCCTTTTGGAAGACTTCCGTCTGGAGAGTCAACTGGCTTTGGCCAGAGT
ACAGGAATTCGTACAGCAGATTGCCCACTTGCCGGCCAAGTGCCAATTGC
TGGGGGCTTCCCCGCTTAATCCTCTAGCTTCAGCTGGCGGAAGTGTCTGT
TTCATTAACGCGATGGCGGAAATCAATCTGGGGATGGCCCAATCCATGCA
CAATGCATCCCTAATCCTGGTGCAGACCCACCAGACCGCCGAGGATCAAG
TGGTGCAGGCTCAGCTGTGCAGTGCCATGGTGGTGCAGCACATCGGCGAC
TATCTGCGCGAGGAGCAGGATCAGTGCCGGCAATCAGCAAGCTTTCTAGA
CCAT
BO12371.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-RB | 723 | CG11672-PB | 1..720 | 17..736 | 3600 | 100 | Plus |
CG11672-RA | 723 | CG11672-PA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-RB | 969 | CG11672-RB | 31..750 | 17..736 | 3600 | 100 | Plus |
CG11672-RA | 1122 | CG11672-RA | 31..750 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8289767..8290435 | 736..68 | 3345 | 100 | Minus |
3R | 32079331 | 3R | 8290497..8290548 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 2543..2567 | 341..365 | 107 | 92 | Plus |
BO12371.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:19 Download gff for
BO12371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 1..723 | 17..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:43 Download gff for
BO12371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 11..737 | 9..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:08 Download gff for
BO12371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 31..750 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:19 Download gff for
BO12371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 11..737 | 9..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:05 Download gff for
BO12371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11672-RA | 31..750 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:05 Download gff for
BO12371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8289765..8290435 | 68..738 | 99 | <- | Minus |
3R | 8290498..8290548 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:08 Download gff for
BO12371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4115487..4116157 | 68..738 | 99 | <- | Minus |
arm_3R | 4116220..4116270 | 17..67 | 100 | | Minus |
BO12371.pep Sequence
Translation from 16 to 754
> BO12371.pep
MMSQTLGVLALLLLTLADCQEVGYETKMETETTNYGPVTMVVDNLAEIAV
SVSDDTSIQLEEKINRTRQNIAGNIEVLTANAMAELSDVIYETNQLVVSN
PDCNPAWSLDELNENVTHQLGGCTEDLGSLLEDFRLESQLALARVQEFVQ
QIAHLPAKCQLLGASPLNPLASAGGSVCFINAMAEINLGMAQSMHNASLI
LVQTHQTAEDQVVQAQLCSAMVVQHIGDYLREEQDQCRQSASFLDH
BO12371.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11672-PB | 240 | CG11672-PB | 1..240 | 1..240 | 1210 | 100 | Plus |
CG11672-PA | 240 | CG11672-PA | 1..240 | 1..240 | 1210 | 100 | Plus |