Clone BO12371 Report

Search the DGRC for BO12371

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG11672-RA
Protein status:BO12371.pep: validated full length
Sequenced Size:754

Clone Sequence Records

BO12371.3prime Sequence

752 bp (751 high quality bases) assembled on 2006-04-20

> BO12371.3prime
ATGGTCTAGAAAGCTTGCTGATTGCCGGCACTGATCCTGCTCCTCGCGCA
GATAGTCGCCGATGTGCTGCACCACCATGGCACTGCACAGCTGAGCCTGC
ACCACTTGATCCTCGGCGGTCTGGTGGGTCTGCACCAGGATTAGGGATGC
ATTGTGCATGGATTGGGCCATCCCCAGATTGATTTCCGCCATCGCGTTAA
TGAAACAGACACTTCCGCCAGCTGAAGCTAGAGGATTAAGCGGGGAAGCC
CCCAGCAATTGGCACTTGGCCGGCAAGTGGGCAATCTGCTGTACGAATTC
CTGTACTCTGGCCAAAGCCAGTTGACTCTCCAGACGGAAGTCTTCCAAAA
GGCTTCCCAAGTCTTCCGTACACCCACCCAGCTGATGGGTCACATTTTCA
TTGAGCTCATCCAGGCTCCAGGCTGGGTTGCAATCGGGATTGGACACCAC
TAACTGGTTTGTCTCATAGATCACATCACTTAGTTCGGCCATAGCATTGG
CGGTCAGGACCTCAATGTTACCGGCAATATTTTGCCGAGTGCGATTTATT
TTCTCCTCCAACTGAATGGAGGTGTCGTCGCTGACACTTACGGCAATCTC
TGCCAGATTGTCCACAACCATGGTAACAGGTCCATAGTTTGTAGTCTCTG
TCTCCATCTTTGTTTCATAGCCGACTTCTTGGCAGTCTGCCAAAGTCAGC
AAAAGCAGAGCAAGTACTCCCAGAGTTTGACTCATCATGTCGACTGATAA
CT

BO12371.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-PA 723 CG11672-RA 1..720 738..19 3600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-RB 969 CG11672-RB 31..750 738..19 3600 100 Minus
CG11672-RA 1122 CG11672-RA 31..750 738..19 3600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8289767..8290435 19..687 3345 100 Plus
3R 32079331 3R 8290497..8290548 687..738 260 100 Plus
Blast to na_te.dros performed 2015-02-08 13:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 2543..2567 414..390 107 92 Minus

BO12371.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:56 Download gff for BO12371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-PA 1..723 18..738 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:59 Download gff for BO12371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-PA 1..723 18..738 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:06 Download gff for BO12371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 24..750 19..746 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:28:23 Download gff for BO12371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 24..750 19..746 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:28:23 Download gff for BO12371.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8289767..8290435 19..687 100 <- Plus
3R 8290498..8290555 688..746 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:06 Download gff for BO12371.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4115489..4116157 19..687 100 <- Plus
arm_3R 4116220..4116277 688..746 93   Plus

BO12371.5prime Sequence

752 bp (751 high quality bases) assembled on 2006-04-20

> BO12371.5prime
GAAGTTATCAGTCGACATGATGAGTCAAACTCTGGGAGTACTTGCTCTGC
TTTTGCTGACTTTGGCAGACTGCCAAGAAGTCGGCTATGAAACAAAGATG
GAGACAGAGACTACAAACTATGGACCTGTTACCATGGTTGTGGACAATCT
GGCAGAGATTGCCGTAAGTGTCAGCGACGACACCTCCATTCAGTTGGAGG
AGAAAATAAATCGCACTCGGCAAAATATTGCCGGTAACATTGAGGTCCTG
ACCGCCAATGCTATGGCCGAACTAAGTGATGTGATCTATGAGACAAACCA
GTTAGTGGTGTCCAATCCCGATTGCAACCCAGCCTGGAGCCTGGATGAGC
TCAATGAAAATGTGACCCATCAGCTGGGTGGGTGTACGGAAGACTTGGGA
AGCCTTTTGGAAGACTTCCGTCTGGAGAGTCAACTGGCTTTGGCCAGAGT
ACAGGAATTCGTACAGCAGATTGCCCACTTGCCGGCCAAGTGCCAATTGC
TGGGGGCTTCCCCGCTTAATCCTCTAGCTTCAGCTGGCGGAAGTGTCTGT
TTCATTAACGCGATGGCGGAAATCAATCTGGGGATGGCCCAATCCATGCA
CAATGCATCCCTAATCCTGGTGCAGACCCACCAGACCGCCGAGGATCAAG
TGGTGCAGGCTCAGCTGTGCAGTGCCATGGTGGTGCAGCACATCGGCGAC
TATCTGCGCGAGGAGCAGGATCAGTGCCGGCAATCAGCAAGCTTTCTAGA
CC

BO12371.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-PA 723 CG11672-RA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-RB 969 CG11672-RB 31..750 17..736 3600 100 Plus
CG11672-RA 1122 CG11672-RA 31..750 17..736 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8289767..8290435 736..68 3345 100 Minus
3R 32079331 3R 8290497..8290548 68..17 260 100 Minus
Blast to na_te.dros performed 2015-02-13 12:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 2543..2567 341..365 107 92 Plus

BO12371.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:33:57 Download gff for BO12371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-PA 1..723 17..737 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:00 Download gff for BO12371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-PA 1..723 17..737 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:12:01 Download gff for BO12371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 24..750 9..736 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:41 Download gff for BO12371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 24..750 9..736 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:41 Download gff for BO12371.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8289767..8290435 68..736 100 <- Minus
3R 8290498..8290555 9..67 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:12:01 Download gff for BO12371.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4115489..4116157 68..736 100 <- Minus
arm_3R 4116220..4116277 9..67 93   Minus

BO12371.complete Sequence

754 bp assembled on 2006-10-11

GenBank Submission: FJ632419

> BO12371.complete
GAAGTTATCAGTCGACATGATGAGTCAAACTCTGGGAGTACTTGCTCTGC
TTTTGCTGACTTTGGCAGACTGCCAAGAAGTCGGCTATGAAACAAAGATG
GAGACAGAGACTACAAACTATGGACCTGTTACCATGGTTGTGGACAATCT
GGCAGAGATTGCCGTAAGTGTCAGCGACGACACCTCCATTCAGTTGGAGG
AGAAAATAAATCGCACTCGGCAAAATATTGCCGGTAACATTGAGGTCCTG
ACCGCCAATGCTATGGCCGAACTAAGTGATGTGATCTATGAGACAAACCA
GTTAGTGGTGTCCAATCCCGATTGCAACCCAGCCTGGAGCCTGGATGAGC
TCAATGAAAATGTGACCCATCAGCTGGGTGGGTGTACGGAAGACTTGGGA
AGCCTTTTGGAAGACTTCCGTCTGGAGAGTCAACTGGCTTTGGCCAGAGT
ACAGGAATTCGTACAGCAGATTGCCCACTTGCCGGCCAAGTGCCAATTGC
TGGGGGCTTCCCCGCTTAATCCTCTAGCTTCAGCTGGCGGAAGTGTCTGT
TTCATTAACGCGATGGCGGAAATCAATCTGGGGATGGCCCAATCCATGCA
CAATGCATCCCTAATCCTGGTGCAGACCCACCAGACCGCCGAGGATCAAG
TGGTGCAGGCTCAGCTGTGCAGTGCCATGGTGGTGCAGCACATCGGCGAC
TATCTGCGCGAGGAGCAGGATCAGTGCCGGCAATCAGCAAGCTTTCTAGA
CCAT

BO12371.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-RB 723 CG11672-PB 1..720 17..736 3600 100 Plus
CG11672-RA 723 CG11672-PA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-RB 969 CG11672-RB 31..750 17..736 3600 100 Plus
CG11672-RA 1122 CG11672-RA 31..750 17..736 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8289767..8290435 736..68 3345 100 Minus
3R 32079331 3R 8290497..8290548 68..17 260 100 Minus
Blast to na_te.dros performed 2014-11-28 00:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 2543..2567 341..365 107 92 Plus

BO12371.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:19 Download gff for BO12371.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 1..723 17..737 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:43 Download gff for BO12371.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 11..737 9..736 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:08 Download gff for BO12371.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 31..750 17..738 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:19 Download gff for BO12371.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 11..737 9..736 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:05 Download gff for BO12371.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 31..750 17..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:05 Download gff for BO12371.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8289765..8290435 68..738 99 <- Minus
3R 8290498..8290548 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:08 Download gff for BO12371.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4115487..4116157 68..738 99 <- Minus
arm_3R 4116220..4116270 17..67 100   Minus

BO12371.pep Sequence

Translation from 16 to 754

> BO12371.pep
MMSQTLGVLALLLLTLADCQEVGYETKMETETTNYGPVTMVVDNLAEIAV
SVSDDTSIQLEEKINRTRQNIAGNIEVLTANAMAELSDVIYETNQLVVSN
PDCNPAWSLDELNENVTHQLGGCTEDLGSLLEDFRLESQLALARVQEFVQ
QIAHLPAKCQLLGASPLNPLASAGGSVCFINAMAEINLGMAQSMHNASLI
LVQTHQTAEDQVVQAQLCSAMVVQHIGDYLREEQDQCRQSASFLDH

BO12371.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-PB 240 CG11672-PB 1..240 1..240 1210 100 Plus
CG11672-PA 240 CG11672-PA 1..240 1..240 1210 100 Plus