Clone BO12375 Report

Search the DGRC for BO12375

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCpr56F-RA
Protein status:BO12375.pep: Imported from assembly
Sequenced Size:685

Clone Sequence Records

BO12375.3prime Sequence

683 bp (682 high quality bases) assembled on 2006-04-20

> BO12375.3prime
ATGGTCTAGAAAGCTTGCGTAGCCGTTGAATTTGCCCTGCTGCGCGTTGC
TATCATAACCGCCACCGTTGCGACCATTGCCATTGCCGTTTCCGTTGCCA
TTGCCGACCTGCTCGTACCGAATGGTTGGGCGGTATCCATTCTGGTCGGC
CTCGTACTCAACAATCTGTTTGCGTCCATCGGGCAGCAGGACGTAGTAGC
GGCCCACAGCAAGATCACCATCGCGGGACTCCATGTGGCCGAAGTCATTG
CCCGACTCGTAGTCCTGTACGTCGTACTTGAACTCGTACTTGGCCGGTCC
ATACTGCTCCTCATCCCGTTGTCCGTAGCCGTTGCCGTTGCCATTACCGC
CGCCATAGCCGCCGTTTCCGTTTCCGTTTCCGCCCTTGAAGATGGCACCA
GTCAGCGCTGGAGCACCATATTGACCCTGGGGAGGAGCGATGGGGGCGCC
ATAGCTGTTGCTGGGCGCTCCTCCATTGCCACCGGCCCGCTGGGGTGGCA
AGTAGTTGCTCGACGGCGACTGGTAGCCCTGCGTGGGCGGCAGGTAGTTG
TTGGACGGCGCCTGAGGCGACTGATTGGGGGGCAGGTACTGGTTCTGGGG
AACTGGTGGTTCCGCATGGGTCCAGGCAGCCAGGCACACGAGCAGGGCAA
TGGATGTAAAAGCCTTCATGTCGACTGATAACT

BO12375.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9036-PA 654 CG9036-RA 1..651 669..19 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr56F-RA 1259 CG9036-RA 113..763 669..19 3255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20288867..20289513 19..665 3235 100 Plus
Blast to na_te.dros performed on 2015-02-01 04:57:41 has no hits.

BO12375.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:04 Download gff for BO12375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9036-PA 1..654 15..669 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:10 Download gff for BO12375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9036-PA 1..654 15..669 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:10:14 Download gff for BO12375.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 107..767 14..677 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:51:01 Download gff for BO12375.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 107..767 14..677 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:01 Download gff for BO12375.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20288863..20289513 14..665 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:14 Download gff for BO12375.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16176368..16177018 14..665 99   Plus

BO12375.5prime Sequence

683 bp (682 high quality bases) assembled on 2006-04-20

> BO12375.5prime
GAAGTTATCAGTCGACATGAAGGCTTTTACATCCATTGCCCTGCTCGTGT
GCCTGGCTGCCTGGACCCATGCGGAACCACCAGTTCCCCAGAACCAGTAC
CTGCCCCCCAATCAGTCGCCTCAGGCGCCGTCCAACAACTACCTGCCGCC
CACGCAGGGCTACCAGTCGCCGTCGAGCAACTACTTGCCACCCCAGCGGG
CCGGTGGCAATGGAGGAGCGCCCAGCAACAGCTATGGCGCCCCCATCGCT
CCTCCCCAGGGTCAATATGGTGCTCCAGCGCTGACTGGTGCCATCTTCAA
GGGCGGAAACGGAAACGGAAACGGCGGCTATGGCGGCGGTAATGGCAACG
GCAACGGCTACGGACAACGGGATGAGGAGCAGTATGGACCGGCCAAGTAC
GAGTTCAAGTACGACGTACAGGACTACGAGTCGGGCAATGACTTCGGCCA
CATGGAGTCCCGCGATGGTGATCTTGCTGTGGGCCGCTACTACGTCCTGC
TGCCCGATGGACGCAAACAGATTGTTGAGTACGAGGCCGACCAGAATGGA
TACCGCCCAACCATTCGGTACGAGCAGGTCGGCAATGGCAACGGAAACGG
CAATGGCAATGGTCGCAACGGTGGCGGTTATGATAGCAACGCGCAGCAGG
GCAAATTCAACGGCTACGCAAGCTTTCTAGACC

BO12375.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9036-PA 654 CG9036-RA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr56F-RA 1259 CG9036-RA 113..763 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20288867..20289513 667..21 3235 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:32:16 has no hits.

BO12375.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:05 Download gff for BO12375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9036-PA 1..654 17..671 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:11 Download gff for BO12375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9036-PA 1..654 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:12:37 Download gff for BO12375.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 107..767 9..672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:40:05 Download gff for BO12375.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 107..767 9..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:40:05 Download gff for BO12375.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20288863..20289513 21..672 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:12:37 Download gff for BO12375.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16176368..16177018 21..672 99   Minus

BO12375.complete Sequence

685 bp assembled on 2010-02-09

GenBank Submission: FJ632420

> BO12375.complete
GAAGTTATCAGTCGACATGAAGGCTTTTACATCCATTGCCCTGCTCGTGT
GCCTGGCTGCCTGGACCCATGCGGAACCACCAGTTCCCCAGAACCAGTAC
CTGCCCCCCAATCAGTCGCCTCAGGCGCCGTCCAACAACTACCTGCCGCC
CACGCAGGGCTACCAGTCGCCGTCGAGCAACTACTTGCCACCCCAGCGGG
CCGGTGGCAATGGAGGAGCGCCCAGCAACAGCTATGGCGCCCCCATCGCT
CCTCCCCAGGGTCAATATGGTGCTCCAGCGCTGACTGGTGCCATCTTCAA
GGGCGGAAACGGAAACGGAAACGGCGGCTATGGCGGCGGTAATGGCAACG
GCAACGGCTACGGACAACGGGATGAGGAGCAGTATGGACCGGCCAAGTAC
GAGTTCAAGTACGACGTACAGGACTACGAGTCGGGCAATGACTTCGGCCA
CATGGAGTCCCGCGATGGTGATCTTGCTGTGGGCCGCTACTACGTCCTGC
TGCCCGATGGACGCAAACAGATTGTTGAGTACGAGGCCGACCAGAATGGA
TACCGCCCAACCATTCGGTACGAGCAGGTCGGCAATGGCAACGGAAACGG
CAATGGCAATGGTCGCAACGGTGGCGGTTATGATAGCAACGCGCAGCAGG
GCAAATTCAACGGCTACGCAAGCTTTCTAGACCAT

BO12375.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr56F-RA 654 CG9036-PA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr56F-RA 1259 CG9036-RA 113..763 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20288867..20289513 667..21 3235 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:22:53 has no hits.

BO12375.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:26 Download gff for BO12375.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 1..654 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:34 Download gff for BO12375.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 111..761 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:57 Download gff for BO12375.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 113..763 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:56 Download gff for BO12375.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 111..761 17..669 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:12 Download gff for BO12375.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr56F-RA 113..763 17..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:12 Download gff for BO12375.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20288865..20289513 17..669 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:57 Download gff for BO12375.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16176370..16177018 17..669 99   Minus

BO12375.pep Sequence

Translation from 16 to 685

> BO12375.pep
MKAFTSIALLVCLAAWTHAEPPVPQNQYLPPNQSPQAPSNNYLPPTQGYQ
SPSSNYLPPQRAGGNGGAPSNSYGAPIAPPQGQYGAPALTGAIFKGGNGN
GNGGYGGGNGNGNGYGQRDEEQYGPAKYEFKYDVQDYESGNDFGHMESRD
GDLAVGRYYVLLPDGRKQIVEYEADQNGYRPTIRYEQVGNGNGNGNGNGR
NGGGYDSNAQQGKFNGYASFLDH

BO12375.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr56F-PA 217 CG9036-PA 1..217 1..217 1206 100 Plus
resilin-PA 620 CG15920-PA 248..460 24..218 398 44.5 Plus
resilin-PB 575 CG15920-PB 214..415 24..218 214 34.9 Plus
resilin-PA 620 CG15920-PA 7..267 7..219 209 32.7 Plus
resilin-PB 575 CG15920-PB 7..267 7..219 209 32.7 Plus
Cpr50Cb-PA 178 CG6305-PA 5..175 2..203 202 30.8 Plus
Cpr65Az-PA 239 CG12330-PA 31..187 14..181 183 28.8 Plus
resilin-PA 620 CG15920-PA 183..345 38..214 159 31.6 Plus