Clone Sequence Records
BO12375.3prime Sequence
683 bp (682 high quality bases) assembled on 2006-04-20
> BO12375.3prime
ATGGTCTAGAAAGCTTGCGTAGCCGTTGAATTTGCCCTGCTGCGCGTTGC
TATCATAACCGCCACCGTTGCGACCATTGCCATTGCCGTTTCCGTTGCCA
TTGCCGACCTGCTCGTACCGAATGGTTGGGCGGTATCCATTCTGGTCGGC
CTCGTACTCAACAATCTGTTTGCGTCCATCGGGCAGCAGGACGTAGTAGC
GGCCCACAGCAAGATCACCATCGCGGGACTCCATGTGGCCGAAGTCATTG
CCCGACTCGTAGTCCTGTACGTCGTACTTGAACTCGTACTTGGCCGGTCC
ATACTGCTCCTCATCCCGTTGTCCGTAGCCGTTGCCGTTGCCATTACCGC
CGCCATAGCCGCCGTTTCCGTTTCCGTTTCCGCCCTTGAAGATGGCACCA
GTCAGCGCTGGAGCACCATATTGACCCTGGGGAGGAGCGATGGGGGCGCC
ATAGCTGTTGCTGGGCGCTCCTCCATTGCCACCGGCCCGCTGGGGTGGCA
AGTAGTTGCTCGACGGCGACTGGTAGCCCTGCGTGGGCGGCAGGTAGTTG
TTGGACGGCGCCTGAGGCGACTGATTGGGGGGCAGGTACTGGTTCTGGGG
AACTGGTGGTTCCGCATGGGTCCAGGCAGCCAGGCACACGAGCAGGGCAA
TGGATGTAAAAGCCTTCATGTCGACTGATAACT
BO12375.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9036-PA | 654 | CG9036-RA | 1..651 | 669..19 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr56F-RA | 1259 | CG9036-RA | 113..763 | 669..19 | 3255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20288867..20289513 | 19..665 | 3235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:57:41 has no hits.
BO12375.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:04 Download gff for
BO12375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9036-PA | 1..654 | 15..669 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:10 Download gff for
BO12375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9036-PA | 1..654 | 15..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:10:14 Download gff for
BO12375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 107..767 | 14..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:51:01 Download gff for
BO12375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 107..767 | 14..677 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:01 Download gff for
BO12375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20288863..20289513 | 14..665 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:14 Download gff for
BO12375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16176368..16177018 | 14..665 | 99 | | Plus |
BO12375.5prime Sequence
683 bp (682 high quality bases) assembled on 2006-04-20
> BO12375.5prime
GAAGTTATCAGTCGACATGAAGGCTTTTACATCCATTGCCCTGCTCGTGT
GCCTGGCTGCCTGGACCCATGCGGAACCACCAGTTCCCCAGAACCAGTAC
CTGCCCCCCAATCAGTCGCCTCAGGCGCCGTCCAACAACTACCTGCCGCC
CACGCAGGGCTACCAGTCGCCGTCGAGCAACTACTTGCCACCCCAGCGGG
CCGGTGGCAATGGAGGAGCGCCCAGCAACAGCTATGGCGCCCCCATCGCT
CCTCCCCAGGGTCAATATGGTGCTCCAGCGCTGACTGGTGCCATCTTCAA
GGGCGGAAACGGAAACGGAAACGGCGGCTATGGCGGCGGTAATGGCAACG
GCAACGGCTACGGACAACGGGATGAGGAGCAGTATGGACCGGCCAAGTAC
GAGTTCAAGTACGACGTACAGGACTACGAGTCGGGCAATGACTTCGGCCA
CATGGAGTCCCGCGATGGTGATCTTGCTGTGGGCCGCTACTACGTCCTGC
TGCCCGATGGACGCAAACAGATTGTTGAGTACGAGGCCGACCAGAATGGA
TACCGCCCAACCATTCGGTACGAGCAGGTCGGCAATGGCAACGGAAACGG
CAATGGCAATGGTCGCAACGGTGGCGGTTATGATAGCAACGCGCAGCAGG
GCAAATTCAACGGCTACGCAAGCTTTCTAGACC
BO12375.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9036-PA | 654 | CG9036-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr56F-RA | 1259 | CG9036-RA | 113..763 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20288867..20289513 | 667..21 | 3235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:32:16 has no hits.
BO12375.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:05 Download gff for
BO12375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9036-PA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:11 Download gff for
BO12375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9036-PA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:12:37 Download gff for
BO12375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 107..767 | 9..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:40:05 Download gff for
BO12375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 107..767 | 9..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:40:05 Download gff for
BO12375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20288863..20289513 | 21..672 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:12:37 Download gff for
BO12375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16176368..16177018 | 21..672 | 99 | | Minus |
BO12375.complete Sequence
685 bp assembled on 2010-02-09
GenBank Submission: FJ632420
> BO12375.complete
GAAGTTATCAGTCGACATGAAGGCTTTTACATCCATTGCCCTGCTCGTGT
GCCTGGCTGCCTGGACCCATGCGGAACCACCAGTTCCCCAGAACCAGTAC
CTGCCCCCCAATCAGTCGCCTCAGGCGCCGTCCAACAACTACCTGCCGCC
CACGCAGGGCTACCAGTCGCCGTCGAGCAACTACTTGCCACCCCAGCGGG
CCGGTGGCAATGGAGGAGCGCCCAGCAACAGCTATGGCGCCCCCATCGCT
CCTCCCCAGGGTCAATATGGTGCTCCAGCGCTGACTGGTGCCATCTTCAA
GGGCGGAAACGGAAACGGAAACGGCGGCTATGGCGGCGGTAATGGCAACG
GCAACGGCTACGGACAACGGGATGAGGAGCAGTATGGACCGGCCAAGTAC
GAGTTCAAGTACGACGTACAGGACTACGAGTCGGGCAATGACTTCGGCCA
CATGGAGTCCCGCGATGGTGATCTTGCTGTGGGCCGCTACTACGTCCTGC
TGCCCGATGGACGCAAACAGATTGTTGAGTACGAGGCCGACCAGAATGGA
TACCGCCCAACCATTCGGTACGAGCAGGTCGGCAATGGCAACGGAAACGG
CAATGGCAATGGTCGCAACGGTGGCGGTTATGATAGCAACGCGCAGCAGG
GCAAATTCAACGGCTACGCAAGCTTTCTAGACCAT
BO12375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr56F-RA | 654 | CG9036-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr56F-RA | 1259 | CG9036-RA | 113..763 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20288867..20289513 | 667..21 | 3235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:22:53 has no hits.
BO12375.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:26 Download gff for
BO12375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:34 Download gff for
BO12375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 111..761 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:57 Download gff for
BO12375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 113..763 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:56 Download gff for
BO12375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 111..761 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:12 Download gff for
BO12375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr56F-RA | 113..763 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:12 Download gff for
BO12375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20288865..20289513 | 17..669 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:57 Download gff for
BO12375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16176370..16177018 | 17..669 | 99 | | Minus |
BO12375.pep Sequence
Translation from 16 to 685
> BO12375.pep
MKAFTSIALLVCLAAWTHAEPPVPQNQYLPPNQSPQAPSNNYLPPTQGYQ
SPSSNYLPPQRAGGNGGAPSNSYGAPIAPPQGQYGAPALTGAIFKGGNGN
GNGGYGGGNGNGNGYGQRDEEQYGPAKYEFKYDVQDYESGNDFGHMESRD
GDLAVGRYYVLLPDGRKQIVEYEADQNGYRPTIRYEQVGNGNGNGNGNGR
NGGGYDSNAQQGKFNGYASFLDH
BO12375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr56F-PA | 217 | CG9036-PA | 1..217 | 1..217 | 1206 | 100 | Plus |
resilin-PA | 620 | CG15920-PA | 248..460 | 24..218 | 398 | 44.5 | Plus |
resilin-PB | 575 | CG15920-PB | 214..415 | 24..218 | 214 | 34.9 | Plus |
resilin-PA | 620 | CG15920-PA | 7..267 | 7..219 | 209 | 32.7 | Plus |
resilin-PB | 575 | CG15920-PB | 7..267 | 7..219 | 209 | 32.7 | Plus |
Cpr50Cb-PA | 178 | CG6305-PA | 5..175 | 2..203 | 202 | 30.8 | Plus |
Cpr65Az-PA | 239 | CG12330-PA | 31..187 | 14..181 | 183 | 28.8 | Plus |
resilin-PA | 620 | CG15920-PA | 183..345 | 38..214 | 159 | 31.6 | Plus |