Clone Sequence Records
BO12378.3prime Sequence
679 bp (660 high quality bases) assembled on 2006-04-20
> BO12378.3prime
ATGGTCTAGAAAGCTTGCCTGAGAAAACAGAGAGTTACTGTTCGGACCCG
AACTGGAGCCTGCCATGGATGCACTTAGCATGGAGGTGTCCCTTTGAGAC
GCAGTGGCCGTGCGCTGGTACCGTGCTATGTGGTCCAGGGAATAGGGCAG
AATGGGTCTCACGCTGTGGATCTCCAGAAGCGTGAGGTTGTCTAGCTTTG
CATATGTGCCCTCTCCCTTGATAAAGGCGTCGATCGAAGTGCGCAGCTTG
GACTCGCGTATGTCGAAGATGTCCTTGATCACAGTGCGCAGCTCCTCGCA
ACGCGGAACGTCATCCGGAGCCGTGCTCATGACCAACTGGGCCACTACCA
TGTAATGCTCACAGGGCATTTTGGTAAAGAACTTTGAGCGCTTTTCCTCC
TCCTTGATTTCCTCCAATATATCCATGTCCATCCATTCTGGAGGTACAAT
TCGGCACTTTTGTTGCTTGCGCAGATGCGTGGCCATCCACAGGGGCACGA
AGACGGGAAAACCGGCTCGGAAAGGGCCCACAGGTCCGTATATCAGGTGC
AGAGGCTCGTTGCTGAAGTTCGGTATTATGCTGATCATGCATTTTTCGCC
AATAAATTCAATAATTGAAGGATCCATAATTGCTATAAACAAACAAAACA
AATGCGGGAACATGTCGACTGATAACTTC
BO12378.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18013-PA | 648 | CG18013-RA | 1..645 | 663..19 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf2-RB | 831 | CG18013-RB | 27..671 | 663..19 | 3225 | 100 | Minus |
| Psf2-RC | 811 | CG18013-RC | 37..651 | 633..19 | 3075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4386342..4386705 | 19..382 | 1820 | 100 | Plus |
| 2L | 23513712 | 2L | 4386762..4387044 | 381..663 | 1415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 05:06:12 has no hits.
BO12378.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:10 Download gff for
BO12378.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18013-PA | 1..648 | 16..663 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:18 Download gff for
BO12378.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18013-PA | 1..648 | 16..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:12:10 Download gff for
BO12378.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 24..671 | 19..667 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:52:30 Download gff for
BO12378.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 24..671 | 19..667 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:52:30 Download gff for
BO12378.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4386342..4386705 | 19..382 | 100 | <- | Plus |
| 2L | 4386764..4387047 | 383..667 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:12:10 Download gff for
BO12378.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4386342..4386705 | 19..382 | 100 | <- | Plus |
| arm_2L | 4386764..4387047 | 383..667 | 99 | | Plus |
BO12378.5prime Sequence
622 bp (543 high quality bases) assembled on 2006-04-20
> BO12378.5prime
GAAGTTATCAGTCGACATGTTCCCGCATTTGTTTTGTTTGTTTATAGCAA
TTATGGATCCTTCAATTATTGAATTTATTGGCGAAAAATGCATGATCAGC
ATAATACCGAACTTCAGCAACGAGCCTCTGCACCTGATATACGGACCTGT
GGGCCCTTTCCGAGCCGGTTTTCCCGTCTTCGTGCCCCTGTGGATGGCCA
CGCATCTGCGCAAGCAACAAAAGTGCCGAATTGTACCTCCAGAATGGATG
GACATGGATATATTGGAGGAAATCAAGGAGGAGGAAAAGCGCTCAAAGTT
CTTTACCAAAATGCCCTGTGAGCATTACATGGTAGTGGCCCAGTTGGTCA
TGAGCACGGCTCCTGATGACGTTCCGCGTTGCGAGGAGCTGCGCACTGTG
ATCAAGGACATCTTCGACATACGCTAGTCCAAGCTGCGCACTTCGATCGA
CGCCTTTATCAAGGGAGAGGGCACATATGCAAAGCTAGACAACCTCACGC
TTCTGGAGATCCACAGCGTGAGACCCATTCTGCCCTATTCCCTGGACCAC
ATAGCACGGTACCAGCCGCACGGCCACTGCGTCTCAAAAGGGACACCTCC
ATGCTAAGTGCATCCATGGTAG
BO12378.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18013-PA | 648 | CG18013-RA | 1..550 | 17..566 | 2700 | 99.6 | Plus |
| CG18013-PA | 648 | CG18013-RA | 569..601 | 587..619 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf2-RB | 831 | CG18013-RB | 27..627 | 17..619 | 2935 | 99.3 | Plus |
| Psf2-RC | 811 | CG18013-RC | 37..607 | 47..619 | 2785 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4386386..4386705 | 619..298 | 1480 | 98.8 | Minus |
| 2L | 23513712 | 2L | 4386762..4387044 | 299..17 | 1415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 00:32:53 has no hits.
BO12378.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:11 Download gff for
BO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18013-PA | 1..604 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:20 Download gff for
BO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18013-PA | 1..604 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:22 Download gff for
BO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 24..630 | 13..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:47 Download gff for
BO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 24..630 | 13..622 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:47 Download gff for
BO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4386383..4386705 | 298..622 | 98 | <- | Minus |
| 2L | 4386764..4387047 | 13..297 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:22 Download gff for
BO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4386383..4386705 | 298..622 | 98 | <- | Minus |
| arm_2L | 4386764..4387047 | 13..297 | 99 | | Minus |
BO12378.complete Sequence
679 bp assembled on 2006-10-11
GenBank Submission: FJ632421
> BO12378.complete
GAAGTTATCAGTCGACATGTTCCCGCATTTGTTTTGTTTGTTTATAGCAA
TTATGGATCCTTCAATTATTGAATTTATTGGCGAAAAATGCATGATCAGC
ATAATACCGAACTTCAGCAACGAGCCTCTGCACCTGATATACGGACCTGT
GGGCCCTTTCCGAGCCGGTTTTCCCGTCTTCGTGCCCCTGTGGATGGCCA
CGCATCTGCGCAAGCAACAAAAGTGCCGAATTGTACCTCCAGAATGGATG
GACATGGATATATTGGAGGAAATCAAGGAGGAGGAAAAGCGCTCAAAGTT
CTTTACCAAAATGCCCTGTGAGCATTACATGGTAGTGGCCCAGTTGGTCA
TGAGCACGGCTCCGGATGACGTTCCGCGTTGCGAGGAGCTGCGCACTGTG
ATCAAGGACATCTTCGACATACGCGAGTCCAAGCTGCGCACTTCGATCGA
CGCCTTTATCAAGGGAGAGGGCACATATGCAAAGCTAGACAACCTCACGC
TTCTGGAGATCCACAGCGTGAGACCCATTCTGCCCTATTCCCTGGACCAC
ATAGCACGGTACCAGCGCACGGCCACTGCGTCTCAAAGGGACACCTCCAT
GCTAAGTGCATCCATGGCAGGCTCCAGTTCGGGTCCGAACAGTAACTCTC
TGTTTTCTCAGGCAAGCTTTCTAGACCAT
BO12378.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf2-RC | 612 | CG18013-PC | 1..609 | 53..661 | 3045 | 100 | Plus |
| Psf2-RB | 612 | CG18013-PB | 1..609 | 53..661 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf2-RB | 831 | CG18013-RB | 27..671 | 17..661 | 3225 | 100 | Plus |
| Psf2-RC | 811 | CG18013-RC | 37..651 | 47..661 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4386342..4386705 | 661..298 | 1820 | 100 | Minus |
| 2L | 23513712 | 2L | 4386762..4387044 | 299..17 | 1415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:52:01 has no hits.
BO12378.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:20 Download gff for
BO12378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RA | 1..648 | 17..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:45 Download gff for
BO12378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RA | 3..647 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:04 Download gff for
BO12378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 32..671 | 22..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:20 Download gff for
BO12378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RA | 3..647 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:39 Download gff for
BO12378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf2-RB | 32..671 | 22..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:39 Download gff for
BO12378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4386764..4387039 | 22..297 | 100 | | Minus |
| 2L | 4386339..4386705 | 298..663 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:04 Download gff for
BO12378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4386339..4386705 | 298..663 | 99 | <- | Minus |
| arm_2L | 4386764..4387039 | 22..297 | 100 | | Minus |
BO12378.pep Sequence
Translation from 16 to 679
> BO12378.pep
MFPHLFCLFIAIMDPSIIEFIGEKCMISIIPNFSNEPLHLIYGPVGPFRA
GFPVFVPLWMATHLRKQQKCRIVPPEWMDMDILEEIKEEEKRSKFFTKMP
CEHYMVVAQLVMSTAPDDVPRCEELRTVIKDIFDIRESKLRTSIDAFIKG
EGTYAKLDNLTLLEIHSVRPILPYSLDHIARYQRTATASQRDTSMLSASM
AGSSSGPNSNSLFSQASFLDH
BO12378.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf2-PC | 203 | CG18013-PC | 1..203 | 13..215 | 1058 | 100 | Plus |
| Psf2-PB | 203 | CG18013-PB | 1..203 | 13..215 | 1058 | 100 | Plus |
