Clone BO12380 Report

Search the DGRC for BO12380

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptAtg7-RA
Protein status:BO12380.pep:
Sequenced Size:2086

Clone Sequence Records

BO12380.3prime Sequence

877 bp (834 high quality bases) assembled on 2006-04-20

> BO12380.3prime
ATGGTCTAGAAAGCTTGCATCCTCGTCGCTATCGGACATGTCAAATTCTT
CATCATCAAAATCGATAATCTCGCTGTTTAACCGCTTGAATTCGGAGATT
CCCGTCAAATCCTCCAGAAACTTGGCTGTTTCAAAAGTTTTAAACAGGAA
AGCATGACCCTCTTTTTTATATTCATTTAGGACGGCCGCTGAACAGGCTA
TGCACTGAGCAAACTTTTGAGTGGCGGGCAGAATATTCTCGTAGTTGCAC
AGCATTCCACGGATGGAGTGAGGCAAAATTCCTAGCAGACCCTCCGGCAC
CTTTTCTTCCGTCTCCTCCGACCTGCCACGCCCACTCTGTGCATAGTAGG
CGGGTGCCAGCTCCTTACGAGGATGCTGCAGCAAAGCCACCAACAATTCC
ACCGCATAGCTGGCCGCAATGTTGGATACTCCGGGTCGTGTCACTGTGCA
CTGTTGATCCAAAGTTCGGTCTTTGAGCGAATTTCCAGGGGCCGTAACAT
CGTTACAAAAGTAGCAACCTAATTGATCGCCATTAATGCACTTAAGTCCT
TCGATTTCTTGGCCATCGTCGCCTGCTTCCTTACGCGTAGTGCCATGTCG
CATTACCAGATAACTGTCAAAGCCTAAAGCTGCGTTGATGACAATTTTTT
CCTTTGCCGCTCCAAGCAGGGTGGGCAGCCAGCGGCTTTCGCGCGAATCT
GTGAGCAGAAAGATGACATCATGGTCCTGCACAAGCTTTTCGATAACCTT
CAAATGCTCCTTCGTCTGGGCTAGAAGCGATTCTCCAATAGTATGCCCAG
GCATGGGAATCTCCAGCACATAACCCGCCGTTTCCGCAGACGGATTGATC
TCTTTTCATCTCTGAGCAGCTGTAGTC

BO12380.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5489-PB 1533 Atg7-RB 672..1530 877..19 4245 99.7 Minus
CG5489-PA 2055 Atg7-RA 1194..2052 877..19 4245 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
Atg7-RA 2395 CG5489-RA 1279..2137 877..19 4265 99.8 Minus
Atg7-RB 1873 CG5489-RB 757..1615 877..19 4265 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18621038..18621332 186..480 1475 100 Plus
2R 25286936 2R 18623230..18623461 646..877 1130 99.1 Plus
2R 25286936 2R 18623005..18623169 481..645 825 100 Plus
2R 25286936 2R 18620839..18620956 70..187 590 100 Plus
2R 25286936 2R 18620724..18620776 19..71 265 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:34:47 has no hits.

BO12380.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:14 Download gff for BO12380.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg7-PA 1194..2055 18..877 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:23 Download gff for BO12380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5489-PA 1194..2055 18..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:12 Download gff for BO12380.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg7-RB 757..1621 11..877 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:16 Download gff for BO12380.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg7-RB 757..1621 11..877 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:16 Download gff for BO12380.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18621039..18621332 187..480 100 <- Plus
2R 18623005..18623169 481..645 100 <- Plus
2R 18623230..18623461 646..877 99   Plus
2R 18620718..18620774 11..69 93 <- Plus
2R 18620839..18620955 70..186 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:12 Download gff for BO12380.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14510510..14510674 481..645 100 <- Plus
arm_2R 14508223..14508279 11..69 93 <- Plus
arm_2R 14508344..14508460 70..186 100 <- Plus
arm_2R 14508544..14508837 187..480 100 <- Plus
arm_2R 14510735..14510966 646..877 99   Plus

BO12380.5prime Sequence

884 bp (747 high quality bases) assembled on 2006-04-20

> BO12380.5prime
GAAGTTATCAGTCGACATGAGCACGGAAAAAGAGATAATTTTGCAATTTG
CTCCGTGGGAATCTTTTGTGTCGCCCACTTTCTGGCACAAGCTAGCGGAG
CTTAAGCTCGACCACGATCGCCTGTCCGACTCGAAACGCTCCATTACTGG
ACACTACACAAATCGTAATGCAAGTGGATGCCTTTTGGAAGTAGACTACA
CGGCCTACAACAGAATGGCAAAGCCTCCAAAATTCAGCCATTCCGCTATA
GGCACCATCTACAATAAGAACACAATCGAAGAGTTCAAGGCCCTGGACAA
ATTACAACTGCTGGCCGATGAGGGCAAGGAACTGCTGGCTGATATGTGCA
GTGGTGGCGCCTTGAGAGATCCCAGTCTATTGACCCGGTTCTTTGTTCTC
TCCTTTGCCGATTTAAAGTGTCACAGCTACTACTATTGGTTCGCCTTTCC
GTGCCCGCTGACGCCCACCTTAAAGCTTCAGGGAGCCGTCCAAAAACTGC
GGGACTTGCCCAATAGTAGTAGCTATATAATGGCTCTAAAGGCCTTACCC
ACTGAGTCACAGAACTTCTTCATTCTGTATGCTAATGTGGAGAAGAACAT
TTTCGAAGCCCGTAGTTTAAGTTCCCTTGACGATAAAAATGTTGAGTTCT
GTTATTTTGGTTTTGCTGATCCCAGCGAGTATGAGCATCCAGCTTGGATA
ATGCGAAACTATGCTGCCTTTCTGCTTCAGCAATGTCCCTCTTTTGTTGG
AAAACCATTGAAGTTTCTTGGCCTGCGACACAATCAACAAATGAACATCG
ATGACAGCCTTGTATGGAAGGTGATTCAGACTGAAGCTTGCGATCTTAGC
CAAAGCGAAAATATAAAGTTCGTGGGCTGGGAGC

BO12380.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5489-PA 2055 Atg7-RA 1..868 17..884 4340 100 Plus
CG5489-PB 1533 Atg7-RB 1..197 17..213 985 100 Plus
CG5489-PB 1533 Atg7-RB 197..346 735..884 750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Atg7-RA 2395 CG5489-RA 84..953 15..884 4350 100 Plus
Atg7-RB 1873 CG5489-RB 84..282 15..213 995 100 Plus
Atg7-RB 1873 CG5489-RB 282..431 735..884 750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18624185..18624709 735..211 2625 100 Minus
2R 25286936 2R 18624763..18624961 213..15 995 100 Minus
2R 25286936 2R 18623979..18624128 884..735 750 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:05:55 has no hits.

BO12380.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:15 Download gff for BO12380.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg7-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:25 Download gff for BO12380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5489-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:05 Download gff for BO12380.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 80..953 9..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:51 Download gff for BO12380.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 80..953 9..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:51 Download gff for BO12380.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18623979..18624127 736..884 100 <- Minus
2R 18624185..18624706 214..735 100 <- Minus
2R 18624763..18624965 9..213 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:05 Download gff for BO12380.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14511484..14511632 736..884 100 <- Minus
arm_2R 14511690..14512211 214..735 100 <- Minus
arm_2R 14512268..14512470 9..213 98   Minus

BO12380.complete Sequence

2086 bp assembled on 2008-01-17

GenBank Submission: FJ632423

> BO12380.complete
GAAGTTATCAGTCGACATGAGCACGGAAAAAGAGATAATTTTGCAATTTG
CTCCGTGGGAATCTTTTGTGTCGCCCACTTTCTGGCACAAGCTAGCGGAG
CTTAAGCTCGACCACGATCGCCTGTCCGACTCGAAACGCTCCATTACTGG
ACACTACACAAATCGTAATGCAAGTGGATGCCTTTTGGAAGTAGACTACA
CGGCCTACAACAGAATGGCAAAGCCTCCAAAATTCAGCCATTCCGCTATA
GGCACCATCTACAATAAGAACACAATCGAAGAGTTCAAGGCCCTGGACAA
ATTACAACTGCTGGCCGATGAGGGCAAGGAACTGCTGGCTGATATGTGCA
GTGGTGGCGCCTTGAGAGATCCCAGTCTATTGACCCGGTTCTTTGTTCTC
TCCTTTGCCGATTTAAAGTGTCACAGCTACTACTATTGGTTCGCCTTTCC
GTGCCCGCTGACGCCCACCTTAAAGCTTCAGGGAGCCGTCCAAAAACTGC
GGGACTTGCCCAATAGTAGTAGCTATATAATGGCTCTAAAGGCCTTACCC
ACTGAGTCACAGAACTTCTTCATTCTGTATGCTAATGTGGAGAAGAACAT
TTTCGAAGCCCGTAGTTTAAGTTCCCTTGACGATAAAAATGTTGAGTTCT
GTTATTTTGGTTTTGCTGATCCCAGCGAGTATGAGCATCCAGCTTGGATA
ATGCGAAACTATGCTGCCTTTCTGCTTCAGCAATGTCCCTCTTTTGTTGG
AAAACCATTGAAGTTTCTTGGCCTGCGACACAATCAACAAATGAACATCG
ATGACAGCCTTGTATGGAAGGTGATTCAGACTGAAGCTTGCGATCTTAGC
CAAAGCGAAAATATAAAGTTCGTGGGCTGGGAGCTAAATAAAAATGGCAA
AATGGGGCCAAGAATGGTGTGCATGAGGGACAGCATGGATCCAGCCAAAC
TCGCTGAGAACTCTGTAAACCTGAACCTGAAACTAATGAAGTGGCGCCTT
GTTCCCGATCTCAATCTCGAAATCATCTCCCAAACAAAATGCCTGCTCTT
TGGAGCTGGTACTTTAGGATGCGCTGTAGCTAGAAATCTGCTGTCCTGGG
GATTTAAGCACATAACCCTTTTGGACAGCGGCAAGGTTGGGTTCTCTAAT
CCAGTGCGTCAGAATCTCTACACGCATGCAGATGCTGTGGCAGGCAATCG
GATGAAGGCGACTACAGCTGCTCAGAGATTGAAAGAGATCAATCCGTCTG
CGGAAACGGCGGGTTATGTGCTGGAGATTCCCATGCCTGGGCATACTATT
GGAGAATCGCTTCTAGCCCAGACGAAGGAGCATTTGAAGGTTATCGAAAA
GCTTGTGCAGGACCATGATGTCATCTTTCTGCTCACAGATTCGCGCGAAA
GCCGCTGGCTGCCCACCCTGCTTGGAGCGGCAAAGGAAAAAATTGTCATC
AACGCAGCTTTAGGCTTTGACAGTTATCTGGTAATGCGACATGGCACTAC
GCGTAAGGAAGCAGGCGACGATGGCCAAGAAATCGAAGGACTTAAGTGCA
TTAATGGCGATCAATTAGGTTGCTACTTTTGTAACGATGTTACGGCCCCT
GGAAATTCGCTCAAAGACCGAACTTTGGATCAACAGTGCACAGTGACACG
ACCCGGAGTATCCAACATTGCGGCCAGCTATGCGGTGGAATTGTTGGTGG
CTTTGCTGCAGCATCCTCGTAAGGAGCTGGCACCCGCCTACTATGCACAG
AGTGGGCGTGGCAGGTCGGAGGAGACGGAAGAAAAGGTGCCGGAGGGTCT
GCTAGGAATTTTGCCTCACTCCATCCGTGGAATGCTGTGCAACTACGAGA
ATATTCTGCCCGCCACTCAAAAGTTTGCTCAGTGCATAGCCTGTTCAGCG
GCCGTCCTAAATGAATATAAAAAAGAGGGTCATGCTTTCCTGTTTAAAAC
TTTTGAAACAGCCAAGTTTCTGGAGGATTTGACGGGAATCTCCGAATTCA
AGCGGTTAAACAGCGAGATTATCGATTTTGATGATGAAGAATTTGACATG
TCCGATAGCGACGAGGATGCAAGCTTTCTAGACCAT

BO12380.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Atg7-RA 2055 CG5489-PA 1..2052 17..2068 10260 100 Plus
Atg7-RB 1533 CG5489-PB 197..1530 735..2068 6670 100 Plus
Atg7-RB 1533 CG5489-PB 1..197 17..213 985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Atg7-RA 2395 CG5489-RA 84..2137 15..2068 10270 100 Plus
Atg7-RB 1873 CG5489-RB 282..1615 735..2068 6670 100 Plus
Atg7-RB 1873 CG5489-RB 84..282 15..213 995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18624185..18624709 735..211 2625 100 Minus
2R 25286936 2R 18623230..18623578 1441..1093 1745 100 Minus
2R 25286936 2R 18621038..18621332 1901..1607 1475 100 Minus
2R 25286936 2R 18623915..18624128 948..735 1070 100 Minus
2R 25286936 2R 18624763..18624961 213..15 995 100 Minus
2R 25286936 2R 18623005..18623169 1606..1442 825 100 Minus
2R 25286936 2R 18623639..18623783 1093..949 725 100 Minus
2R 25286936 2R 18620839..18620956 2017..1900 590 100 Minus
2R 25286936 2R 18620724..18620776 2068..2016 265 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:54:06 has no hits.

BO12380.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:26 Download gff for BO12380.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 1..2055 17..2069 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:08 Download gff for BO12380.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 90..2141 17..2070 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:16 Download gff for BO12380.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 86..2137 17..2070 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:27 Download gff for BO12380.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 84..2147 9..2076 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:24 Download gff for BO12380.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 86..2137 17..2070 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:24 Download gff for BO12380.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18623639..18623783 949..1093 100 <- Minus
2R 18623915..18624127 736..948 100 <- Minus
2R 18620722..18620774 2018..2070 96 <- Minus
2R 18620839..18620955 1901..2017 100 <- Minus
2R 18621039..18621332 1607..1900 100 <- Minus
2R 18623005..18623169 1442..1606 100 <- Minus
2R 18623230..18623577 1094..1441 100 <- Minus
2R 18624185..18624706 214..735 100 <- Minus
2R 18624763..18624959 17..213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:16 Download gff for BO12380.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14511420..14511632 736..948 100 <- Minus
arm_2R 14512268..14512464 17..213 100   Minus
arm_2R 14511144..14511288 949..1093 100 <- Minus
arm_2R 14508227..14508279 2018..2070 96 <- Minus
arm_2R 14508344..14508460 1901..2017 100 <- Minus
arm_2R 14508544..14508837 1607..1900 100 <- Minus
arm_2R 14510510..14510674 1442..1606 100 <- Minus
arm_2R 14510735..14511082 1094..1441 100 <- Minus
arm_2R 14511690..14512211 214..735 100 <- Minus

BO12380.pep Sequence

Translation from 16 to 2086

> BO12380.pep
MSTEKEIILQFAPWESFVSPTFWHKLAELKLDHDRLSDSKRSITGHYTNR
NASGCLLEVDYTAYNRMAKPPKFSHSAIGTIYNKNTIEEFKALDKLQLLA
DEGKELLADMCSGGALRDPSLLTRFFVLSFADLKCHSYYYWFAFPCPLTP
TLKLQGAVQKLRDLPNSSSYIMALKALPTESQNFFILYANVEKNIFEARS
LSSLDDKNVEFCYFGFADPSEYEHPAWIMRNYAAFLLQQCPSFVGKPLKF
LGLRHNQQMNIDDSLVWKVIQTEACDLSQSENIKFVGWELNKNGKMGPRM
VCMRDSMDPAKLAENSVNLNLKLMKWRLVPDLNLEIISQTKCLLFGAGTL
GCAVARNLLSWGFKHITLLDSGKVGFSNPVRQNLYTHADAVAGNRMKATT
AAQRLKEINPSAETAGYVLEIPMPGHTIGESLLAQTKEHLKVIEKLVQDH
DVIFLLTDSRESRWLPTLLGAAKEKIVINAALGFDSYLVMRHGTTRKEAG
DDGQEIEGLKCINGDQLGCYFCNDVTAPGNSLKDRTLDQQCTVTRPGVSN
IAASYAVELLVALLQHPRKELAPAYYAQSGRGRSEETEEKVPEGLLGILP
HSIRGMLCNYENILPATQKFAQCIACSAAVLNEYKKEGHAFLFKTFETAK
FLEDLTGISEFKRLNSEIIDFDDEEFDMSDSDEDASFLDH

BO12380.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Atg7-PA 684 CG5489-PA 1..684 1..684 3588 100 Plus
Atg7-PB 510 CG5489-PB 67..510 241..684 2313 100 Plus
Atg7-PB 510 CG5489-PB 1..76 1..73 355 90.8 Plus