Clone Sequence Records
BO12380.3prime Sequence
877 bp (834 high quality bases) assembled on 2006-04-20
> BO12380.3prime
ATGGTCTAGAAAGCTTGCATCCTCGTCGCTATCGGACATGTCAAATTCTT
CATCATCAAAATCGATAATCTCGCTGTTTAACCGCTTGAATTCGGAGATT
CCCGTCAAATCCTCCAGAAACTTGGCTGTTTCAAAAGTTTTAAACAGGAA
AGCATGACCCTCTTTTTTATATTCATTTAGGACGGCCGCTGAACAGGCTA
TGCACTGAGCAAACTTTTGAGTGGCGGGCAGAATATTCTCGTAGTTGCAC
AGCATTCCACGGATGGAGTGAGGCAAAATTCCTAGCAGACCCTCCGGCAC
CTTTTCTTCCGTCTCCTCCGACCTGCCACGCCCACTCTGTGCATAGTAGG
CGGGTGCCAGCTCCTTACGAGGATGCTGCAGCAAAGCCACCAACAATTCC
ACCGCATAGCTGGCCGCAATGTTGGATACTCCGGGTCGTGTCACTGTGCA
CTGTTGATCCAAAGTTCGGTCTTTGAGCGAATTTCCAGGGGCCGTAACAT
CGTTACAAAAGTAGCAACCTAATTGATCGCCATTAATGCACTTAAGTCCT
TCGATTTCTTGGCCATCGTCGCCTGCTTCCTTACGCGTAGTGCCATGTCG
CATTACCAGATAACTGTCAAAGCCTAAAGCTGCGTTGATGACAATTTTTT
CCTTTGCCGCTCCAAGCAGGGTGGGCAGCCAGCGGCTTTCGCGCGAATCT
GTGAGCAGAAAGATGACATCATGGTCCTGCACAAGCTTTTCGATAACCTT
CAAATGCTCCTTCGTCTGGGCTAGAAGCGATTCTCCAATAGTATGCCCAG
GCATGGGAATCTCCAGCACATAACCCGCCGTTTCCGCAGACGGATTGATC
TCTTTTCATCTCTGAGCAGCTGTAGTC
BO12380.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5489-PB | 1533 | Atg7-RB | 672..1530 | 877..19 | 4245 | 99.7 | Minus |
CG5489-PA | 2055 | Atg7-RA | 1194..2052 | 877..19 | 4245 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg7-RA | 2395 | CG5489-RA | 1279..2137 | 877..19 | 4265 | 99.8 | Minus |
Atg7-RB | 1873 | CG5489-RB | 757..1615 | 877..19 | 4265 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18621038..18621332 | 186..480 | 1475 | 100 | Plus |
2R | 25286936 | 2R | 18623230..18623461 | 646..877 | 1130 | 99.1 | Plus |
2R | 25286936 | 2R | 18623005..18623169 | 481..645 | 825 | 100 | Plus |
2R | 25286936 | 2R | 18620839..18620956 | 70..187 | 590 | 100 | Plus |
2R | 25286936 | 2R | 18620724..18620776 | 19..71 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:34:47 has no hits.
BO12380.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:14 Download gff for
BO12380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg7-PA | 1194..2055 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:23 Download gff for
BO12380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5489-PA | 1194..2055 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:12 Download gff for
BO12380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg7-RB | 757..1621 | 11..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:16 Download gff for
BO12380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg7-RB | 757..1621 | 11..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:16 Download gff for
BO12380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18621039..18621332 | 187..480 | 100 | <- | Plus |
2R | 18623005..18623169 | 481..645 | 100 | <- | Plus |
2R | 18623230..18623461 | 646..877 | 99 | | Plus |
2R | 18620718..18620774 | 11..69 | 93 | <- | Plus |
2R | 18620839..18620955 | 70..186 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:12 Download gff for
BO12380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14510510..14510674 | 481..645 | 100 | <- | Plus |
arm_2R | 14508223..14508279 | 11..69 | 93 | <- | Plus |
arm_2R | 14508344..14508460 | 70..186 | 100 | <- | Plus |
arm_2R | 14508544..14508837 | 187..480 | 100 | <- | Plus |
arm_2R | 14510735..14510966 | 646..877 | 99 | | Plus |
BO12380.5prime Sequence
884 bp (747 high quality bases) assembled on 2006-04-20
> BO12380.5prime
GAAGTTATCAGTCGACATGAGCACGGAAAAAGAGATAATTTTGCAATTTG
CTCCGTGGGAATCTTTTGTGTCGCCCACTTTCTGGCACAAGCTAGCGGAG
CTTAAGCTCGACCACGATCGCCTGTCCGACTCGAAACGCTCCATTACTGG
ACACTACACAAATCGTAATGCAAGTGGATGCCTTTTGGAAGTAGACTACA
CGGCCTACAACAGAATGGCAAAGCCTCCAAAATTCAGCCATTCCGCTATA
GGCACCATCTACAATAAGAACACAATCGAAGAGTTCAAGGCCCTGGACAA
ATTACAACTGCTGGCCGATGAGGGCAAGGAACTGCTGGCTGATATGTGCA
GTGGTGGCGCCTTGAGAGATCCCAGTCTATTGACCCGGTTCTTTGTTCTC
TCCTTTGCCGATTTAAAGTGTCACAGCTACTACTATTGGTTCGCCTTTCC
GTGCCCGCTGACGCCCACCTTAAAGCTTCAGGGAGCCGTCCAAAAACTGC
GGGACTTGCCCAATAGTAGTAGCTATATAATGGCTCTAAAGGCCTTACCC
ACTGAGTCACAGAACTTCTTCATTCTGTATGCTAATGTGGAGAAGAACAT
TTTCGAAGCCCGTAGTTTAAGTTCCCTTGACGATAAAAATGTTGAGTTCT
GTTATTTTGGTTTTGCTGATCCCAGCGAGTATGAGCATCCAGCTTGGATA
ATGCGAAACTATGCTGCCTTTCTGCTTCAGCAATGTCCCTCTTTTGTTGG
AAAACCATTGAAGTTTCTTGGCCTGCGACACAATCAACAAATGAACATCG
ATGACAGCCTTGTATGGAAGGTGATTCAGACTGAAGCTTGCGATCTTAGC
CAAAGCGAAAATATAAAGTTCGTGGGCTGGGAGC
BO12380.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5489-PA | 2055 | Atg7-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
CG5489-PB | 1533 | Atg7-RB | 1..197 | 17..213 | 985 | 100 | Plus |
CG5489-PB | 1533 | Atg7-RB | 197..346 | 735..884 | 750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg7-RA | 2395 | CG5489-RA | 84..953 | 15..884 | 4350 | 100 | Plus |
Atg7-RB | 1873 | CG5489-RB | 84..282 | 15..213 | 995 | 100 | Plus |
Atg7-RB | 1873 | CG5489-RB | 282..431 | 735..884 | 750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18624185..18624709 | 735..211 | 2625 | 100 | Minus |
2R | 25286936 | 2R | 18624763..18624961 | 213..15 | 995 | 100 | Minus |
2R | 25286936 | 2R | 18623979..18624128 | 884..735 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:05:55 has no hits.
BO12380.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:15 Download gff for
BO12380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg7-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:25 Download gff for
BO12380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5489-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:05 Download gff for
BO12380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg7-RA | 80..953 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:51 Download gff for
BO12380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg7-RA | 80..953 | 9..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:51 Download gff for
BO12380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18623979..18624127 | 736..884 | 100 | <- | Minus |
2R | 18624185..18624706 | 214..735 | 100 | <- | Minus |
2R | 18624763..18624965 | 9..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:05 Download gff for
BO12380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14511484..14511632 | 736..884 | 100 | <- | Minus |
arm_2R | 14511690..14512211 | 214..735 | 100 | <- | Minus |
arm_2R | 14512268..14512470 | 9..213 | 98 | | Minus |
BO12380.complete Sequence
2086 bp assembled on 2008-01-17
GenBank Submission: FJ632423
> BO12380.complete
GAAGTTATCAGTCGACATGAGCACGGAAAAAGAGATAATTTTGCAATTTG
CTCCGTGGGAATCTTTTGTGTCGCCCACTTTCTGGCACAAGCTAGCGGAG
CTTAAGCTCGACCACGATCGCCTGTCCGACTCGAAACGCTCCATTACTGG
ACACTACACAAATCGTAATGCAAGTGGATGCCTTTTGGAAGTAGACTACA
CGGCCTACAACAGAATGGCAAAGCCTCCAAAATTCAGCCATTCCGCTATA
GGCACCATCTACAATAAGAACACAATCGAAGAGTTCAAGGCCCTGGACAA
ATTACAACTGCTGGCCGATGAGGGCAAGGAACTGCTGGCTGATATGTGCA
GTGGTGGCGCCTTGAGAGATCCCAGTCTATTGACCCGGTTCTTTGTTCTC
TCCTTTGCCGATTTAAAGTGTCACAGCTACTACTATTGGTTCGCCTTTCC
GTGCCCGCTGACGCCCACCTTAAAGCTTCAGGGAGCCGTCCAAAAACTGC
GGGACTTGCCCAATAGTAGTAGCTATATAATGGCTCTAAAGGCCTTACCC
ACTGAGTCACAGAACTTCTTCATTCTGTATGCTAATGTGGAGAAGAACAT
TTTCGAAGCCCGTAGTTTAAGTTCCCTTGACGATAAAAATGTTGAGTTCT
GTTATTTTGGTTTTGCTGATCCCAGCGAGTATGAGCATCCAGCTTGGATA
ATGCGAAACTATGCTGCCTTTCTGCTTCAGCAATGTCCCTCTTTTGTTGG
AAAACCATTGAAGTTTCTTGGCCTGCGACACAATCAACAAATGAACATCG
ATGACAGCCTTGTATGGAAGGTGATTCAGACTGAAGCTTGCGATCTTAGC
CAAAGCGAAAATATAAAGTTCGTGGGCTGGGAGCTAAATAAAAATGGCAA
AATGGGGCCAAGAATGGTGTGCATGAGGGACAGCATGGATCCAGCCAAAC
TCGCTGAGAACTCTGTAAACCTGAACCTGAAACTAATGAAGTGGCGCCTT
GTTCCCGATCTCAATCTCGAAATCATCTCCCAAACAAAATGCCTGCTCTT
TGGAGCTGGTACTTTAGGATGCGCTGTAGCTAGAAATCTGCTGTCCTGGG
GATTTAAGCACATAACCCTTTTGGACAGCGGCAAGGTTGGGTTCTCTAAT
CCAGTGCGTCAGAATCTCTACACGCATGCAGATGCTGTGGCAGGCAATCG
GATGAAGGCGACTACAGCTGCTCAGAGATTGAAAGAGATCAATCCGTCTG
CGGAAACGGCGGGTTATGTGCTGGAGATTCCCATGCCTGGGCATACTATT
GGAGAATCGCTTCTAGCCCAGACGAAGGAGCATTTGAAGGTTATCGAAAA
GCTTGTGCAGGACCATGATGTCATCTTTCTGCTCACAGATTCGCGCGAAA
GCCGCTGGCTGCCCACCCTGCTTGGAGCGGCAAAGGAAAAAATTGTCATC
AACGCAGCTTTAGGCTTTGACAGTTATCTGGTAATGCGACATGGCACTAC
GCGTAAGGAAGCAGGCGACGATGGCCAAGAAATCGAAGGACTTAAGTGCA
TTAATGGCGATCAATTAGGTTGCTACTTTTGTAACGATGTTACGGCCCCT
GGAAATTCGCTCAAAGACCGAACTTTGGATCAACAGTGCACAGTGACACG
ACCCGGAGTATCCAACATTGCGGCCAGCTATGCGGTGGAATTGTTGGTGG
CTTTGCTGCAGCATCCTCGTAAGGAGCTGGCACCCGCCTACTATGCACAG
AGTGGGCGTGGCAGGTCGGAGGAGACGGAAGAAAAGGTGCCGGAGGGTCT
GCTAGGAATTTTGCCTCACTCCATCCGTGGAATGCTGTGCAACTACGAGA
ATATTCTGCCCGCCACTCAAAAGTTTGCTCAGTGCATAGCCTGTTCAGCG
GCCGTCCTAAATGAATATAAAAAAGAGGGTCATGCTTTCCTGTTTAAAAC
TTTTGAAACAGCCAAGTTTCTGGAGGATTTGACGGGAATCTCCGAATTCA
AGCGGTTAAACAGCGAGATTATCGATTTTGATGATGAAGAATTTGACATG
TCCGATAGCGACGAGGATGCAAGCTTTCTAGACCAT
BO12380.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg7-RA | 2055 | CG5489-PA | 1..2052 | 17..2068 | 10260 | 100 | Plus |
Atg7-RB | 1533 | CG5489-PB | 197..1530 | 735..2068 | 6670 | 100 | Plus |
Atg7-RB | 1533 | CG5489-PB | 1..197 | 17..213 | 985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg7-RA | 2395 | CG5489-RA | 84..2137 | 15..2068 | 10270 | 100 | Plus |
Atg7-RB | 1873 | CG5489-RB | 282..1615 | 735..2068 | 6670 | 100 | Plus |
Atg7-RB | 1873 | CG5489-RB | 84..282 | 15..213 | 995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18624185..18624709 | 735..211 | 2625 | 100 | Minus |
2R | 25286936 | 2R | 18623230..18623578 | 1441..1093 | 1745 | 100 | Minus |
2R | 25286936 | 2R | 18621038..18621332 | 1901..1607 | 1475 | 100 | Minus |
2R | 25286936 | 2R | 18623915..18624128 | 948..735 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 18624763..18624961 | 213..15 | 995 | 100 | Minus |
2R | 25286936 | 2R | 18623005..18623169 | 1606..1442 | 825 | 100 | Minus |
2R | 25286936 | 2R | 18623639..18623783 | 1093..949 | 725 | 100 | Minus |
2R | 25286936 | 2R | 18620839..18620956 | 2017..1900 | 590 | 100 | Minus |
2R | 25286936 | 2R | 18620724..18620776 | 2068..2016 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:54:06 has no hits.
BO12380.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:26 Download gff for
BO12380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg7-RA | 1..2055 | 17..2069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:08 Download gff for
BO12380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg7-RA | 90..2141 | 17..2070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:16 Download gff for
BO12380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg7-RA | 86..2137 | 17..2070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:27 Download gff for
BO12380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg7-RA | 84..2147 | 9..2076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:24 Download gff for
BO12380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg7-RA | 86..2137 | 17..2070 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:24 Download gff for
BO12380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18623639..18623783 | 949..1093 | 100 | <- | Minus |
2R | 18623915..18624127 | 736..948 | 100 | <- | Minus |
2R | 18620722..18620774 | 2018..2070 | 96 | <- | Minus |
2R | 18620839..18620955 | 1901..2017 | 100 | <- | Minus |
2R | 18621039..18621332 | 1607..1900 | 100 | <- | Minus |
2R | 18623005..18623169 | 1442..1606 | 100 | <- | Minus |
2R | 18623230..18623577 | 1094..1441 | 100 | <- | Minus |
2R | 18624185..18624706 | 214..735 | 100 | <- | Minus |
2R | 18624763..18624959 | 17..213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:16 Download gff for
BO12380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14511420..14511632 | 736..948 | 100 | <- | Minus |
arm_2R | 14512268..14512464 | 17..213 | 100 | | Minus |
arm_2R | 14511144..14511288 | 949..1093 | 100 | <- | Minus |
arm_2R | 14508227..14508279 | 2018..2070 | 96 | <- | Minus |
arm_2R | 14508344..14508460 | 1901..2017 | 100 | <- | Minus |
arm_2R | 14508544..14508837 | 1607..1900 | 100 | <- | Minus |
arm_2R | 14510510..14510674 | 1442..1606 | 100 | <- | Minus |
arm_2R | 14510735..14511082 | 1094..1441 | 100 | <- | Minus |
arm_2R | 14511690..14512211 | 214..735 | 100 | <- | Minus |
BO12380.pep Sequence
Translation from 16 to 2086
> BO12380.pep
MSTEKEIILQFAPWESFVSPTFWHKLAELKLDHDRLSDSKRSITGHYTNR
NASGCLLEVDYTAYNRMAKPPKFSHSAIGTIYNKNTIEEFKALDKLQLLA
DEGKELLADMCSGGALRDPSLLTRFFVLSFADLKCHSYYYWFAFPCPLTP
TLKLQGAVQKLRDLPNSSSYIMALKALPTESQNFFILYANVEKNIFEARS
LSSLDDKNVEFCYFGFADPSEYEHPAWIMRNYAAFLLQQCPSFVGKPLKF
LGLRHNQQMNIDDSLVWKVIQTEACDLSQSENIKFVGWELNKNGKMGPRM
VCMRDSMDPAKLAENSVNLNLKLMKWRLVPDLNLEIISQTKCLLFGAGTL
GCAVARNLLSWGFKHITLLDSGKVGFSNPVRQNLYTHADAVAGNRMKATT
AAQRLKEINPSAETAGYVLEIPMPGHTIGESLLAQTKEHLKVIEKLVQDH
DVIFLLTDSRESRWLPTLLGAAKEKIVINAALGFDSYLVMRHGTTRKEAG
DDGQEIEGLKCINGDQLGCYFCNDVTAPGNSLKDRTLDQQCTVTRPGVSN
IAASYAVELLVALLQHPRKELAPAYYAQSGRGRSEETEEKVPEGLLGILP
HSIRGMLCNYENILPATQKFAQCIACSAAVLNEYKKEGHAFLFKTFETAK
FLEDLTGISEFKRLNSEIIDFDDEEFDMSDSDEDASFLDH
BO12380.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg7-PA | 684 | CG5489-PA | 1..684 | 1..684 | 3588 | 100 | Plus |
Atg7-PB | 510 | CG5489-PB | 67..510 | 241..684 | 2313 | 100 | Plus |
Atg7-PB | 510 | CG5489-PB | 1..76 | 1..73 | 355 | 90.8 | Plus |