Clone Sequence Records
BO12381.3prime Sequence
470 bp (469 high quality bases) assembled on 2006-04-20
> BO12381.3prime
ATGGTCTAGAAAGCTTGCGGCGAAGACCTTACGCACCACGTGGCGGTTGA
TGGGCAGCCAGCAGGAGAAGACTCGGTTGGCCCAGGTGCAGACATCCGAC
TCGGCCTCGTTGTGGTCGATGCACTTCTCCAGGCCGTGCTGGACCGTGGA
CAGGTCTTTGCTGCTCTTGGAGGTGAACTGGGCGATCATGGCGCGCTCGT
CAAATCCCTTCTTCTCCGAGAACAGCTCAAGCTTCTCCAGGAAGCACTTG
ACGAAGCAGCTGGTGCGCCGGTGGGCGGGAAACTCGTAGTTCAGGTACTT
CTCGTAGATGTCGTCCGGCACGTAGTAGTCCTCACGGCACTCCTCGAACG
CCTTCTCTGCGTCGGCGTGGTCCTTCAGCAGGAACTTGGCCGTAGTCTGG
GCCACCAGAAACGTGGCAACGGCTGCAACGATCAGCAGGAGGGATTGGGA
CTGCATGTCGACTGATAACT
BO12381.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31558-PA | 441 | Obp83g-RA | 1..438 | 456..19 | 2190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83g-RA | 569 | CG31558-RA | 57..494 | 456..19 | 2190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6111746..6112126 | 19..399 | 1905 | 100 | Plus |
| 3R | 32079331 | 3R | 6112187..6112246 | 397..456 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:15:16 has no hits.
BO12381.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:16 Download gff for
BO12381.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31558-PA | 1..441 | 16..456 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:26 Download gff for
BO12381.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31558-PA | 1..441 | 16..456 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:28:33 Download gff for
BO12381.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83g-RA | 49..500 | 12..463 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:14 Download gff for
BO12381.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83g-RA | 49..500 | 12..463 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:14 Download gff for
BO12381.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6111740..6112123 | 12..396 | 98 | <- | Plus |
| 3R | 6112187..6112254 | 397..463 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:28:33 Download gff for
BO12381.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1937462..1937845 | 12..396 | 98 | <- | Plus |
| arm_3R | 1937909..1937976 | 397..463 | 95 | | Plus |
BO12381.5prime Sequence
470 bp (469 high quality bases) assembled on 2006-04-20
> BO12381.5prime
GAAGTTATCAGTCGACATGCAGTCCCAATCCCTCCTGCTGATCGTTGCAG
CCGTTGCCACGTTTCTGGTGGCCCAGACTACGGCCAAGTTCCTGCTGAAG
GACCACGCCGACGCAGAGAAGGCGTTCGAGGAGTGCCGTGAGGACTACTA
CGTGCCGGACGACATCTACGAGAAGTACCTGAACTACGAGTTTCCCGCCC
ACCGGCGCACCAGCTGCTTCGTCAAGTGCTTCCTGGAGAAGCTTGAGCTG
TTCTCGGAGAAGAAGGGATTTGACGAGCGCGCCATGATCGCCCAGTTCAC
CTCCAAGAGCAGCAAAGACCTGTCCACGGTCCAGCACGGCCTGGAGAAGT
GCATCGACCACAACGAGGCCGAGTCGGATGTCTGCACCTGGGCCAACCGA
GTCTTCTCCTGCTGGCTGCCCATCAACCGCCACGTGGTGCGTAAGGTCTT
CGCCGCAAGCTTTCTAGACC
BO12381.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31558-PA | 441 | Obp83g-RA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83g-RA | 569 | CG31558-RA | 57..494 | 17..454 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6111746..6112126 | 454..74 | 1905 | 100 | Minus |
| 3R | 32079331 | 3R | 6112187..6112246 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:43:14 has no hits.
BO12381.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:17 Download gff for
BO12381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31558-PA | 1..441 | 17..457 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:28 Download gff for
BO12381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31558-PA | 1..441 | 17..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:25 Download gff for
BO12381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83g-RA | 49..500 | 10..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:03 Download gff for
BO12381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83g-RA | 49..500 | 10..461 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:03 Download gff for
BO12381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6111740..6112123 | 77..461 | 98 | <- | Minus |
| 3R | 6112187..6112254 | 10..76 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:25 Download gff for
BO12381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1937462..1937845 | 77..461 | 98 | <- | Minus |
| arm_3R | 1937909..1937976 | 10..76 | 95 | | Minus |
BO12381.complete Sequence
472 bp assembled on 2006-10-11
GenBank Submission: FJ632424
> BO12381.complete
GAAGTTATCAGTCGACATGCAGTCCCAATCCCTCCTGCTGATCGTTGCAG
CCGTTGCCACGTTTCTGGTGGCCCAGACTACGGCCAAGTTCCTGCTGAAG
GACCACGCCGACGCAGAGAAGGCGTTCGAGGAGTGCCGTGAGGACTACTA
CGTGCCGGACGACATCTACGAGAAGTACCTGAACTACGAGTTTCCCGCCC
ACCGGCGCACCAGCTGCTTCGTCAAGTGCTTCCTGGAGAAGCTTGAGCTG
TTCTCGGAGAAGAAGGGATTTGACGAGCGCGCCATGATCGCCCAGTTCAC
CTCCAAGAGCAGCAAAGACCTGTCCACGGTCCAGCACGGCCTGGAGAAGT
GCATCGACCACAACGAGGCCGAGTCGGATGTCTGCACCTGGGCCAACCGA
GTCTTCTCCTGCTGGCTGCCCATCAACCGCCACGTGGTGCGTAAGGTCTT
CGCCGCAAGCTTTCTAGACCAT
BO12381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:46:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83g-RA | 441 | CG31558-PA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83g-RA | 569 | CG31558-RA | 57..494 | 17..454 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6111746..6112126 | 454..74 | 1905 | 100 | Minus |
| 3R | 32079331 | 3R | 6112187..6112246 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:46:23 has no hits.
BO12381.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:22 Download gff for
BO12381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83g-RA | 1..441 | 17..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:48 Download gff for
BO12381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83g-RA | 44..495 | 10..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:22 Download gff for
BO12381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83g-RA | 57..494 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:22 Download gff for
BO12381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83g-RA | 44..495 | 10..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:08 Download gff for
BO12381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83g-RA | 57..494 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:08 Download gff for
BO12381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6111742..6112123 | 77..456 | 99 | <- | Minus |
| 3R | 6112187..6112246 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:22 Download gff for
BO12381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1937464..1937845 | 77..456 | 99 | <- | Minus |
| arm_3R | 1937909..1937968 | 17..76 | 100 | | Minus |
BO12381.pep Sequence
Translation from 16 to 472
> BO12381.pep
MQSQSLLLIVAAVATFLVAQTTAKFLLKDHADAEKAFEECREDYYVPDDI
YEKYLNYEFPAHRRTSCFVKCFLEKLELFSEKKGFDERAMIAQFTSKSSK
DLSTVQHGLEKCIDHNEAESDVCTWANRVFSCWLPINRHVVRKVFAASFL
DH
BO12381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83g-PA | 146 | CG31558-PA | 1..146 | 1..146 | 770 | 100 | Plus |
| Obp99a-PB | 142 | CG18111-PB | 10..139 | 17..146 | 189 | 30 | Plus |
| Obp99a-PA | 142 | CG18111-PA | 10..139 | 17..146 | 189 | 30 | Plus |
| Obp44a-PB | 143 | CG2297-PB | 4..137 | 12..142 | 171 | 30.4 | Plus |
| Obp44a-PA | 143 | CG2297-PA | 4..137 | 12..142 | 171 | 30.4 | Plus |
