Clone Sequence Records
BO12382.complete Sequence
2102 bp assembled on 2008-09-03
GenBank Submission: KX796543
> BO12382.complete
GAAGTTATCAGTCGAACATGTCAACCACTGCCGATCCCGTGGCGCTGGGG
GTAAACTCCCCCGTGGAGGATGTAGTGGCCAAAACCACCACAACGGTGGC
CAATGCGATTGCGAAGACAGTGGCCGTAATTAGCAGCACGGTCTCAACTA
GCTCCACAACTGGCGCCACTTCCACCATTTCAACGAGTAGTAGCACACCC
ACTACCTCGACCACTTTCGCCTACACTCCCACGCCCACTCCCACTCAATC
AGCATCCCCATCCCTGGAGGATGGTGAGGAGAAACTCAGCGTGAAGGATT
TAAGCCAGGCCCTGCAGCATTTCGGTATTGTTGATTACTTGGTCTTCATC
GCCATGTTGGCGGTCTGCGCCGTTATCGGCTTCTATTTCGGCTTTATCGA
AAAGAAGCAAAAGAAACAGAAGCTGGCCGGCAAGGACGGCGGTGGGGCGG
CGGGCGTCGAGGAGAGGCGTGGCTCGGAGGCGCTGGACTACCTGGTGGGC
GGACGGCAAATGAAAGTGTTTCCGGTCGCGCTGTCACTTGTGGCCAGCTT
CGTGTCTGGAATCTCGCTTCTGGGAACATCAACGGAAATCTATGTATATG
GCACGCAGTACGCCTTCATTCTGGTGACCCTGGCCATTTCGGGAGCTATT
TCGTGGTATATATTCCTGCCTGTATTCTGCAATCTCCAGCTGACATCCAC
CTATGAGTACTTTCAATTGCGCTATGGCGCTGGCATACGCAATTTGGGCT
CGGTTCTATTTATTGTGGGCACGATGCTCTGGCTTCCTGTTGCGCTTTAT
GTACCGGCCATCACCTACAATCAAGTGACTGGCACTGGCATCCATGTAAT
TACGCCCATTGTGTGCACTATCTGCACTTTCTACACGTGTGTGGGCGGAC
TTAAGGCCGTCGTTTGGACAGATGTCATTCAGAGCTTTGTTATGTTTGGT
TCCATTTTGGCGGTTTGCGTCAAGGGCACCTTCGATGTGGGCGGACTGGG
CGTGGTTCTGCAACGCAATGAAGATGGCGGACGTCTTAATGCACCGGAGT
TGACTTGGGACCCCACAGTGCGATTGTCCATGTTGTCCGTGATTTTGGGT
GGCACTCTGCATAAGATCCAGTCCTCGGATGTCAACCAAGTGTCCATTCA
GCGATTCCTATCCCTCCCGAGTTATGAGCATGCCAAGCGATGTATGCTGG
TTTTCACAGTGCTCCTCATCTTCCTACTCAGCTGCTGCAGTTACATGGGC
CTGGTGTCCTATGCCGTCTATCACGACTGTGATCCCATAAGTACTAAGTT
AGCGGCTGCCGTCGACCAACTGCCATCTCTGCTAATGATGCGAACGCTGG
GCTCTTTACCTGGATTACCAGGACTCTTTGTGTCTGGCGTATTCAGCGCT
GCCCTGAGCTCACTTTCCACGGGTCTCAACTCGCTGGCATGTGTCATTAC
TCAGGATATCGTAAGACCCTTGCTGAAAGTACCGATGACCGAGCGCCAGA
CGGCTTTTTGGTTGCGGGCAATTGTCGTTGTTTGCGGATTTTGCTGCCTG
GGAATGGTCAACGTCGTGGAGAAGCTGGGACAAGTGGTTCCACTGGCTAC
GAGCACAGCGGCGGTTTCGATGGGTCCTTTATTGGGCATTTATTGCATGG
GCGTGGGTTTGCCTTGGGTAAAAGGAAAGAGCGTTCTCCTGGGCAGTGTA
GTGTCCTTTTTGGTATTGTCGTGGATTTGTATCAAGGCGCAGTTGGCTCA
AATGCATGGAGAGATTCGTTATCCCAAACTTCCCGTATCGGTGGATGGCT
GTGACTATGATTTCGATAATCAAACAGTTCACGAAACAATCCACGAGTAC
AGACCTTCGGAGCGAAACATCTATCACTTGTCATTCCTGTGGTATACAGC
ATTGGGCGGGTTTATTTGCACTGTGGTTTCAGTGTTGGCTGGATTCGTTT
TCGGTTGGGAGGATCTCAATAAAATGGATCCAGCCTTGATTACGCCCTGT
ATGCGGCGTTTTTTGCCCAATAAAAACTATGAGGCTGTTAAAATGCAGGA
TCTCTTTAAGCGCAAGGACGAAATTGAGTCCCAAGCAAGCTTTCTAGACC
AT
BO12382.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42235-RC | 2070 | CG42235-PC | 1..2067 | 18..2084 | 10335 | 100 | Plus |
CG42235-RE | 2076 | CG42235-PE | 1..936 | 18..953 | 3510 | 91.7 | Plus |
CG42235-RD | 2097 | CG42235-PD | 1..695 | 18..712 | 3475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42235-RC | 2328 | CG42235-RC | 225..2291 | 18..2084 | 10335 | 100 | Plus |
CG42235-RE | 2500 | CG42235-RE | 225..1160 | 18..953 | 3510 | 91.7 | Plus |
CG42235-RD | 2389 | CG42235-RD | 225..919 | 18..712 | 3475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25907663..25908192 | 18..547 | 2650 | 100 | Plus |
3R | 32079331 | 3R | 25916031..25916413 | 1297..1679 | 1915 | 100 | Plus |
3R | 32079331 | 3R | 25915701..25915950 | 1049..1298 | 1250 | 100 | Plus |
3R | 32079331 | 3R | 25916698..25916931 | 1851..2084 | 1170 | 100 | Plus |
3R | 32079331 | 3R | 25916469..25916643 | 1678..1852 | 875 | 100 | Plus |
3R | 32079331 | 3R | 25910025..25910186 | 546..707 | 810 | 100 | Plus |
3R | 32079331 | 3R | 25915490..25915647 | 893..1050 | 790 | 100 | Plus |
3R | 32079331 | 3R | 25915358..25915428 | 824..894 | 355 | 100 | Plus |
3R | 32079331 | 3R | 25914994..25915061 | 706..773 | 340 | 100 | Plus |
3R | 32079331 | 3R | 25915118..25915170 | 773..825 | 265 | 100 | Plus |
3R | 32079331 | 3R | 25919305..25919478 | 780..953 | 240 | 75.9 | Plus |
3R | 32079331 | 3R | 25913238..25913402 | 843..1007 | 210 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:17:17 has no hits.
BO12382.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:25 Download gff for
BO12382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42235-RC | 215..2289 | 18..2093 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:18 Download gff for
BO12382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42235-RC | 214..2281 | 17..2086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:42 Download gff for
BO12382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42235-RC | 214..2281 | 17..2086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:15 Download gff for
BO12382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42235-RC | 224..2291 | 17..2086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:15 Download gff for
BO12382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25915491..25915645 | 894..1048 | 100 | -> | Plus |
3R | 25915701..25915950 | 1049..1298 | 100 | -> | Plus |
3R | 25907662..25908192 | 17..547 | 99 | -> | Plus |
3R | 25910027..25910186 | 548..707 | 100 | -> | Plus |
3R | 25914996..25915061 | 708..773 | 100 | -> | Plus |
3R | 25915119..25915170 | 774..825 | 100 | -> | Plus |
3R | 25915360..25915427 | 826..893 | 100 | -> | Plus |
3R | 25916033..25916413 | 1299..1679 | 100 | -> | Plus |
3R | 25916471..25916643 | 1680..1852 | 100 | -> | Plus |
3R | 25916700..25916931 | 1853..2086 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:18 Download gff for
BO12382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21742422..21742653 | 1853..2086 | 99 | | Plus |
arm_3R | 21733384..21733914 | 17..547 | 99 | -> | Plus |
arm_3R | 21735749..21735908 | 548..707 | 100 | -> | Plus |
arm_3R | 21740718..21740783 | 708..773 | 100 | -> | Plus |
arm_3R | 21740841..21740892 | 774..825 | 100 | -> | Plus |
arm_3R | 21741082..21741149 | 826..893 | 100 | -> | Plus |
arm_3R | 21741213..21741367 | 894..1048 | 100 | -> | Plus |
arm_3R | 21741423..21741672 | 1049..1298 | 100 | -> | Plus |
arm_3R | 21741755..21742135 | 1299..1679 | 100 | -> | Plus |
arm_3R | 21742193..21742365 | 1680..1852 | 100 | -> | Plus |
BO12382.3prime Sequence
818 bp (731 high quality bases) assembled on 2006-04-20
> BO12382.3prime
ATGGTCTAGAAAGCTTGCTTGGGACTCAATTTCGTCCTTGCGCTTAAAGA
GATCCTGCATTTTAACAGCCTCATAGTTTTTATTGGGCAAAAAACGCCGC
ATACAGGGCGTAATCAAGGCTGGATCCATTTTATTGAGATCCTCCCAACC
GAAAACGAATCCAGCCAACACTGAAACCACAGTGCAAATAAACCCGCCCA
ATGCTGTATACCACAGGAATGACAAGTGATAGATGTTTCGCTCCGAAGGT
CTGTACTCGTGGATTGTTTCGTGAACTGTTTGATTATCGAAATCATAGTC
ACAGCCATCCACCGATACGGGAAGTTTGGGATAACGAATCTCTCCATGCA
TTTGAGCCAACTGCGCCTTGATACAAATCCACGACAATACCAAAAAGGAC
ACTACACTGCCCAGGAGAACGCTCTTTCCTTTTACCCAAGGCAAACCCAC
GCCCATGCAATAAATGCCCAATAAAGGACCCATCGAAACCGCCGCTGTGC
TCGTAGCCAGTGGAACCACTTGTCCCAGCTTCTCCACGACGTTGACCATT
CCCAGGCAGCAAAATCCGCAAACAACGACAATTGCCCGCAACCAAAAAGC
CGTCTGGCGCTCGGTCATCGGTACTTTCAGCAAGGGTCTTACGATATCCT
GAGTAATGACACATGCCAGCGAGTTGAGACCCGTGGAAAGTGAGCTCAGG
GCAGCGCTGAATACGCCAGACACAAAGAGTCCTGGTAATCCAGGTAAAGA
GCCCAGCGTTCGCATCATTAGCAGAGATGGGAGTTGGTCGACGGCAGCCG
CTAACTTATACTTATGGG
BO12382.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31090-PA | 2070 | CG31090-RA | 1278..2067 | 808..19 | 3925 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42235-RC | 2328 | CG42235-RC | 1491..2291 | 818..19 | 3965 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25916031..25916413 | 806..424 | 1900 | 99.7 | Minus |
3R | 32079331 | 3R | 25916698..25916931 | 252..19 | 1170 | 100 | Minus |
3R | 32079331 | 3R | 25916469..25916643 | 425..251 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:19:59 has no hits.
BO12382.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:18 Download gff for
BO12382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31090-PA | 1267..2070 | 15..818 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:29 Download gff for
BO12382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31090-PA | 1267..2070 | 15..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:38 Download gff for
BO12382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42235-RC | 1481..2289 | 10..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:22 Download gff for
BO12382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42235-RC | 1491..2299 | 10..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:22 Download gff for
BO12382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25916023..25916413 | 424..814 | 98 | -> | Minus |
3R | 25916471..25916643 | 251..423 | 100 | -> | Minus |
3R | 25916700..25916939 | 10..250 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:38 Download gff for
BO12382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21741745..21742135 | 424..814 | 98 | -> | Minus |
arm_3R | 21742193..21742365 | 251..423 | 100 | -> | Minus |
arm_3R | 21742422..21742661 | 10..250 | 98 | | Minus |
BO12382.5prime Sequence
799 bp (726 high quality bases) assembled on 2006-04-20
> BO12382.5prime
GAAGTTATCAGTCGAACATGTCAACCACTGCCGATCCCGTGGCGCTGGGG
GTAAACTCCCCCGTGGAGGATGTAGTGGCCAAAACCACCACAACGGTGGC
CAATGCGATTGCGAAGACAGTGGCCGTAATTAGCAGCACGGTCTCAACTA
GCTCCACAACTGGCGCCACTTCCACCATTTCAACGAGTAGTAGCACACCC
ACTACCTCGACCACTTTCGCCTACACTCCCACGCCCACTCCCACTCAATC
AGCATCCCCATCCCTGGAGGATGGTGAGGAGAAACTCAGCGTGAAGGATT
TAAGCCAGGCCCTGCAGCATTTCGGTATTGTTGATTACTTGGTCTTCATC
GCCATGTTGGCGGTCTGCGCCGTTATCGGCTTCTATTTCGGCTTTATCGA
AAAGAAGCAAAAGAAACAGAAGCTGGCCGGCAAGGACGGCGGTGGGGCGG
CGGGCGTCGAGGAGAGGCGTGGCTCGGAGGCGCTGGACTACCTGGTGGGC
GGACGGCAAATGAAAGTGTTTCCGGTCGCGCTGTCACTTGTGGCCAGCTT
CGTGTCTGGAATCTCGCTTCTGGGAACATCAACGGAAATCTATGTATATG
GCACGCAGTACGCCTTCATTCTGGTGACCCTGGCCATTTCGGGAGCTATT
TCGTGGTATATATTCCTGCCTGTATTCTGCAATCTCCAGCTGACATCCAC
CTATGAGTACTTTCAATTGCGCTTTGGCGCTGGCATACGCAATTTGGGCT
CGGTTCTATTTATTGTGGGGACGATGCTCTGGCCTTCTTGTTGCGCTTT
BO12382.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31090-PA | 2070 | CG31090-RA | 1..766 | 18..783 | 3780 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42235-RC | 2328 | CG42235-RC | 225..1005 | 18..799 | 3840 | 99.5 | Plus |
CG42235-RD | 2389 | CG42235-RD | 225..919 | 18..712 | 3475 | 100 | Plus |
CG42235-RA | 2561 | CG8932-RA | 225..932 | 18..725 | 3465 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25907663..25908192 | 18..547 | 2650 | 100 | Plus |
3R | 32079331 | 3R | 25910025..25910186 | 546..707 | 810 | 100 | Plus |
3R | 32079331 | 3R | 25914994..25915061 | 706..773 | 310 | 97.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:19:40 has no hits.
BO12382.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:19 Download gff for
BO12382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31090-PA | 1..781 | 18..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:31 Download gff for
BO12382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31090-PA | 1..781 | 18..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:22:03 Download gff for
BO12382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42235-RC | 215..995 | 18..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:10 Download gff for
BO12382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42235-RC | 225..1005 | 18..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:10 Download gff for
BO12382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25907663..25908192 | 18..547 | 100 | -> | Plus |
3R | 25910027..25910186 | 548..707 | 100 | -> | Plus |
3R | 25914996..25915061 | 708..773 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:22:03 Download gff for
BO12382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21733385..21733914 | 18..547 | 100 | -> | Plus |
arm_3R | 21735749..21735908 | 548..707 | 100 | -> | Plus |
arm_3R | 21740718..21740783 | 708..773 | 96 | -> | Plus |
BO12382.pep Sequence
Translation from 17 to 2102
> BO12382.pep
MSTTADPVALGVNSPVEDVVAKTTTTVANAIAKTVAVISSTVSTSSTTGA
TSTISTSSSTPTTSTTFAYTPTPTPTQSASPSLEDGEEKLSVKDLSQALQ
HFGIVDYLVFIAMLAVCAVIGFYFGFIEKKQKKQKLAGKDGGGAAGVEER
RGSEALDYLVGGRQMKVFPVALSLVASFVSGISLLGTSTEIYVYGTQYAF
ILVTLAISGAISWYIFLPVFCNLQLTSTYEYFQLRYGAGIRNLGSVLFIV
GTMLWLPVALYVPAITYNQVTGTGIHVITPIVCTICTFYTCVGGLKAVVW
TDVIQSFVMFGSILAVCVKGTFDVGGLGVVLQRNEDGGRLNAPELTWDPT
VRLSMLSVILGGTLHKIQSSDVNQVSIQRFLSLPSYEHAKRCMLVFTVLL
IFLLSCCSYMGLVSYAVYHDCDPISTKLAAAVDQLPSLLMMRTLGSLPGL
PGLFVSGVFSAALSSLSTGLNSLACVITQDIVRPLLKVPMTERQTAFWLR
AIVVVCGFCCLGMVNVVEKLGQVVPLATSTAAVSMGPLLGIYCMGVGLPW
VKGKSVLLGSVVSFLVLSWICIKAQLAQMHGEIRYPKLPVSVDGCDYDFD
NQTVHETIHEYRPSERNIYHLSFLWYTALGGFICTVVSVLAGFVFGWEDL
NKMDPALITPCMRRFLPNKNYEAVKMQDLFKRKDEIESQASFLDH
BO12382.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42235-PC | 689 | CG42235-PC | 1..689 | 1..689 | 3537 | 100 | Plus |
CG42235-PE | 691 | CG42235-PE | 1..672 | 1..671 | 2349 | 68.5 | Plus |
CG42235-PB | 695 | CG42235-PB | 1..685 | 1..678 | 2261 | 64.6 | Plus |
CG42235-PA | 695 | CG42235-PA | 1..685 | 1..678 | 2247 | 64.3 | Plus |
CG42235-PD | 698 | CG42235-PD | 1..680 | 1..678 | 2142 | 62.7 | Plus |