Clone BO12382 Report

Search the DGRC for BO12382

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG42235-RC
Protein status:BO12382.pep: Inserted from web
Sequenced Size:2102

Clone Sequence Records

BO12382.complete Sequence

2102 bp assembled on 2008-09-03

GenBank Submission: KX796543

> BO12382.complete
GAAGTTATCAGTCGAACATGTCAACCACTGCCGATCCCGTGGCGCTGGGG
GTAAACTCCCCCGTGGAGGATGTAGTGGCCAAAACCACCACAACGGTGGC
CAATGCGATTGCGAAGACAGTGGCCGTAATTAGCAGCACGGTCTCAACTA
GCTCCACAACTGGCGCCACTTCCACCATTTCAACGAGTAGTAGCACACCC
ACTACCTCGACCACTTTCGCCTACACTCCCACGCCCACTCCCACTCAATC
AGCATCCCCATCCCTGGAGGATGGTGAGGAGAAACTCAGCGTGAAGGATT
TAAGCCAGGCCCTGCAGCATTTCGGTATTGTTGATTACTTGGTCTTCATC
GCCATGTTGGCGGTCTGCGCCGTTATCGGCTTCTATTTCGGCTTTATCGA
AAAGAAGCAAAAGAAACAGAAGCTGGCCGGCAAGGACGGCGGTGGGGCGG
CGGGCGTCGAGGAGAGGCGTGGCTCGGAGGCGCTGGACTACCTGGTGGGC
GGACGGCAAATGAAAGTGTTTCCGGTCGCGCTGTCACTTGTGGCCAGCTT
CGTGTCTGGAATCTCGCTTCTGGGAACATCAACGGAAATCTATGTATATG
GCACGCAGTACGCCTTCATTCTGGTGACCCTGGCCATTTCGGGAGCTATT
TCGTGGTATATATTCCTGCCTGTATTCTGCAATCTCCAGCTGACATCCAC
CTATGAGTACTTTCAATTGCGCTATGGCGCTGGCATACGCAATTTGGGCT
CGGTTCTATTTATTGTGGGCACGATGCTCTGGCTTCCTGTTGCGCTTTAT
GTACCGGCCATCACCTACAATCAAGTGACTGGCACTGGCATCCATGTAAT
TACGCCCATTGTGTGCACTATCTGCACTTTCTACACGTGTGTGGGCGGAC
TTAAGGCCGTCGTTTGGACAGATGTCATTCAGAGCTTTGTTATGTTTGGT
TCCATTTTGGCGGTTTGCGTCAAGGGCACCTTCGATGTGGGCGGACTGGG
CGTGGTTCTGCAACGCAATGAAGATGGCGGACGTCTTAATGCACCGGAGT
TGACTTGGGACCCCACAGTGCGATTGTCCATGTTGTCCGTGATTTTGGGT
GGCACTCTGCATAAGATCCAGTCCTCGGATGTCAACCAAGTGTCCATTCA
GCGATTCCTATCCCTCCCGAGTTATGAGCATGCCAAGCGATGTATGCTGG
TTTTCACAGTGCTCCTCATCTTCCTACTCAGCTGCTGCAGTTACATGGGC
CTGGTGTCCTATGCCGTCTATCACGACTGTGATCCCATAAGTACTAAGTT
AGCGGCTGCCGTCGACCAACTGCCATCTCTGCTAATGATGCGAACGCTGG
GCTCTTTACCTGGATTACCAGGACTCTTTGTGTCTGGCGTATTCAGCGCT
GCCCTGAGCTCACTTTCCACGGGTCTCAACTCGCTGGCATGTGTCATTAC
TCAGGATATCGTAAGACCCTTGCTGAAAGTACCGATGACCGAGCGCCAGA
CGGCTTTTTGGTTGCGGGCAATTGTCGTTGTTTGCGGATTTTGCTGCCTG
GGAATGGTCAACGTCGTGGAGAAGCTGGGACAAGTGGTTCCACTGGCTAC
GAGCACAGCGGCGGTTTCGATGGGTCCTTTATTGGGCATTTATTGCATGG
GCGTGGGTTTGCCTTGGGTAAAAGGAAAGAGCGTTCTCCTGGGCAGTGTA
GTGTCCTTTTTGGTATTGTCGTGGATTTGTATCAAGGCGCAGTTGGCTCA
AATGCATGGAGAGATTCGTTATCCCAAACTTCCCGTATCGGTGGATGGCT
GTGACTATGATTTCGATAATCAAACAGTTCACGAAACAATCCACGAGTAC
AGACCTTCGGAGCGAAACATCTATCACTTGTCATTCCTGTGGTATACAGC
ATTGGGCGGGTTTATTTGCACTGTGGTTTCAGTGTTGGCTGGATTCGTTT
TCGGTTGGGAGGATCTCAATAAAATGGATCCAGCCTTGATTACGCCCTGT
ATGCGGCGTTTTTTGCCCAATAAAAACTATGAGGCTGTTAAAATGCAGGA
TCTCTTTAAGCGCAAGGACGAAATTGAGTCCCAAGCAAGCTTTCTAGACC
AT

BO12382.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG42235-RC 2070 CG42235-PC 1..2067 18..2084 10335 100 Plus
CG42235-RE 2076 CG42235-PE 1..936 18..953 3510 91.7 Plus
CG42235-RD 2097 CG42235-PD 1..695 18..712 3475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42235-RC 2328 CG42235-RC 225..2291 18..2084 10335 100 Plus
CG42235-RE 2500 CG42235-RE 225..1160 18..953 3510 91.7 Plus
CG42235-RD 2389 CG42235-RD 225..919 18..712 3475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25907663..25908192 18..547 2650 100 Plus
3R 32079331 3R 25916031..25916413 1297..1679 1915 100 Plus
3R 32079331 3R 25915701..25915950 1049..1298 1250 100 Plus
3R 32079331 3R 25916698..25916931 1851..2084 1170 100 Plus
3R 32079331 3R 25916469..25916643 1678..1852 875 100 Plus
3R 32079331 3R 25910025..25910186 546..707 810 100 Plus
3R 32079331 3R 25915490..25915647 893..1050 790 100 Plus
3R 32079331 3R 25915358..25915428 824..894 355 100 Plus
3R 32079331 3R 25914994..25915061 706..773 340 100 Plus
3R 32079331 3R 25915118..25915170 773..825 265 100 Plus
3R 32079331 3R 25919305..25919478 780..953 240 75.9 Plus
3R 32079331 3R 25913238..25913402 843..1007 210 75.2 Plus
Blast to na_te.dros performed on 2014-11-27 15:17:17 has no hits.

BO12382.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:25 Download gff for BO12382.complete
Subject Subject Range Query Range Percent Splice Strand
CG42235-RC 215..2289 18..2093 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:18 Download gff for BO12382.complete
Subject Subject Range Query Range Percent Splice Strand
CG42235-RC 214..2281 17..2086 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:42 Download gff for BO12382.complete
Subject Subject Range Query Range Percent Splice Strand
CG42235-RC 214..2281 17..2086 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:15 Download gff for BO12382.complete
Subject Subject Range Query Range Percent Splice Strand
CG42235-RC 224..2291 17..2086 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:15 Download gff for BO12382.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25915491..25915645 894..1048 100 -> Plus
3R 25915701..25915950 1049..1298 100 -> Plus
3R 25907662..25908192 17..547 99 -> Plus
3R 25910027..25910186 548..707 100 -> Plus
3R 25914996..25915061 708..773 100 -> Plus
3R 25915119..25915170 774..825 100 -> Plus
3R 25915360..25915427 826..893 100 -> Plus
3R 25916033..25916413 1299..1679 100 -> Plus
3R 25916471..25916643 1680..1852 100 -> Plus
3R 25916700..25916931 1853..2086 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:18 Download gff for BO12382.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21742422..21742653 1853..2086 99   Plus
arm_3R 21733384..21733914 17..547 99 -> Plus
arm_3R 21735749..21735908 548..707 100 -> Plus
arm_3R 21740718..21740783 708..773 100 -> Plus
arm_3R 21740841..21740892 774..825 100 -> Plus
arm_3R 21741082..21741149 826..893 100 -> Plus
arm_3R 21741213..21741367 894..1048 100 -> Plus
arm_3R 21741423..21741672 1049..1298 100 -> Plus
arm_3R 21741755..21742135 1299..1679 100 -> Plus
arm_3R 21742193..21742365 1680..1852 100 -> Plus

BO12382.3prime Sequence

818 bp (731 high quality bases) assembled on 2006-04-20

> BO12382.3prime
ATGGTCTAGAAAGCTTGCTTGGGACTCAATTTCGTCCTTGCGCTTAAAGA
GATCCTGCATTTTAACAGCCTCATAGTTTTTATTGGGCAAAAAACGCCGC
ATACAGGGCGTAATCAAGGCTGGATCCATTTTATTGAGATCCTCCCAACC
GAAAACGAATCCAGCCAACACTGAAACCACAGTGCAAATAAACCCGCCCA
ATGCTGTATACCACAGGAATGACAAGTGATAGATGTTTCGCTCCGAAGGT
CTGTACTCGTGGATTGTTTCGTGAACTGTTTGATTATCGAAATCATAGTC
ACAGCCATCCACCGATACGGGAAGTTTGGGATAACGAATCTCTCCATGCA
TTTGAGCCAACTGCGCCTTGATACAAATCCACGACAATACCAAAAAGGAC
ACTACACTGCCCAGGAGAACGCTCTTTCCTTTTACCCAAGGCAAACCCAC
GCCCATGCAATAAATGCCCAATAAAGGACCCATCGAAACCGCCGCTGTGC
TCGTAGCCAGTGGAACCACTTGTCCCAGCTTCTCCACGACGTTGACCATT
CCCAGGCAGCAAAATCCGCAAACAACGACAATTGCCCGCAACCAAAAAGC
CGTCTGGCGCTCGGTCATCGGTACTTTCAGCAAGGGTCTTACGATATCCT
GAGTAATGACACATGCCAGCGAGTTGAGACCCGTGGAAAGTGAGCTCAGG
GCAGCGCTGAATACGCCAGACACAAAGAGTCCTGGTAATCCAGGTAAAGA
GCCCAGCGTTCGCATCATTAGCAGAGATGGGAGTTGGTCGACGGCAGCCG
CTAACTTATACTTATGGG

BO12382.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31090-PA 2070 CG31090-RA 1278..2067 808..19 3925 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG42235-RC 2328 CG42235-RC 1491..2291 818..19 3965 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25916031..25916413 806..424 1900 99.7 Minus
3R 32079331 3R 25916698..25916931 252..19 1170 100 Minus
3R 32079331 3R 25916469..25916643 425..251 875 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:19:59 has no hits.

BO12382.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:18 Download gff for BO12382.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31090-PA 1267..2070 15..818 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:29 Download gff for BO12382.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31090-PA 1267..2070 15..818 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:38 Download gff for BO12382.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42235-RC 1481..2289 10..818 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:22 Download gff for BO12382.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42235-RC 1491..2299 10..818 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:22 Download gff for BO12382.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25916023..25916413 424..814 98 -> Minus
3R 25916471..25916643 251..423 100 -> Minus
3R 25916700..25916939 10..250 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:38 Download gff for BO12382.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21741745..21742135 424..814 98 -> Minus
arm_3R 21742193..21742365 251..423 100 -> Minus
arm_3R 21742422..21742661 10..250 98   Minus

BO12382.5prime Sequence

799 bp (726 high quality bases) assembled on 2006-04-20

> BO12382.5prime
GAAGTTATCAGTCGAACATGTCAACCACTGCCGATCCCGTGGCGCTGGGG
GTAAACTCCCCCGTGGAGGATGTAGTGGCCAAAACCACCACAACGGTGGC
CAATGCGATTGCGAAGACAGTGGCCGTAATTAGCAGCACGGTCTCAACTA
GCTCCACAACTGGCGCCACTTCCACCATTTCAACGAGTAGTAGCACACCC
ACTACCTCGACCACTTTCGCCTACACTCCCACGCCCACTCCCACTCAATC
AGCATCCCCATCCCTGGAGGATGGTGAGGAGAAACTCAGCGTGAAGGATT
TAAGCCAGGCCCTGCAGCATTTCGGTATTGTTGATTACTTGGTCTTCATC
GCCATGTTGGCGGTCTGCGCCGTTATCGGCTTCTATTTCGGCTTTATCGA
AAAGAAGCAAAAGAAACAGAAGCTGGCCGGCAAGGACGGCGGTGGGGCGG
CGGGCGTCGAGGAGAGGCGTGGCTCGGAGGCGCTGGACTACCTGGTGGGC
GGACGGCAAATGAAAGTGTTTCCGGTCGCGCTGTCACTTGTGGCCAGCTT
CGTGTCTGGAATCTCGCTTCTGGGAACATCAACGGAAATCTATGTATATG
GCACGCAGTACGCCTTCATTCTGGTGACCCTGGCCATTTCGGGAGCTATT
TCGTGGTATATATTCCTGCCTGTATTCTGCAATCTCCAGCTGACATCCAC
CTATGAGTACTTTCAATTGCGCTTTGGCGCTGGCATACGCAATTTGGGCT
CGGTTCTATTTATTGTGGGGACGATGCTCTGGCCTTCTTGTTGCGCTTT

BO12382.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31090-PA 2070 CG31090-RA 1..766 18..783 3780 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG42235-RC 2328 CG42235-RC 225..1005 18..799 3840 99.5 Plus
CG42235-RD 2389 CG42235-RD 225..919 18..712 3475 100 Plus
CG42235-RA 2561 CG8932-RA 225..932 18..725 3465 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25907663..25908192 18..547 2650 100 Plus
3R 32079331 3R 25910025..25910186 546..707 810 100 Plus
3R 32079331 3R 25914994..25915061 706..773 310 97.1 Plus
Blast to na_te.dros performed on 2015-02-12 11:19:40 has no hits.

BO12382.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:19 Download gff for BO12382.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31090-PA 1..781 18..799 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:31 Download gff for BO12382.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31090-PA 1..781 18..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:22:03 Download gff for BO12382.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42235-RC 215..995 18..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:10 Download gff for BO12382.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42235-RC 225..1005 18..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:10 Download gff for BO12382.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25907663..25908192 18..547 100 -> Plus
3R 25910027..25910186 548..707 100 -> Plus
3R 25914996..25915061 708..773 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:22:03 Download gff for BO12382.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21733385..21733914 18..547 100 -> Plus
arm_3R 21735749..21735908 548..707 100 -> Plus
arm_3R 21740718..21740783 708..773 96 -> Plus

BO12382.pep Sequence

Translation from 17 to 2102

> BO12382.pep
MSTTADPVALGVNSPVEDVVAKTTTTVANAIAKTVAVISSTVSTSSTTGA
TSTISTSSSTPTTSTTFAYTPTPTPTQSASPSLEDGEEKLSVKDLSQALQ
HFGIVDYLVFIAMLAVCAVIGFYFGFIEKKQKKQKLAGKDGGGAAGVEER
RGSEALDYLVGGRQMKVFPVALSLVASFVSGISLLGTSTEIYVYGTQYAF
ILVTLAISGAISWYIFLPVFCNLQLTSTYEYFQLRYGAGIRNLGSVLFIV
GTMLWLPVALYVPAITYNQVTGTGIHVITPIVCTICTFYTCVGGLKAVVW
TDVIQSFVMFGSILAVCVKGTFDVGGLGVVLQRNEDGGRLNAPELTWDPT
VRLSMLSVILGGTLHKIQSSDVNQVSIQRFLSLPSYEHAKRCMLVFTVLL
IFLLSCCSYMGLVSYAVYHDCDPISTKLAAAVDQLPSLLMMRTLGSLPGL
PGLFVSGVFSAALSSLSTGLNSLACVITQDIVRPLLKVPMTERQTAFWLR
AIVVVCGFCCLGMVNVVEKLGQVVPLATSTAAVSMGPLLGIYCMGVGLPW
VKGKSVLLGSVVSFLVLSWICIKAQLAQMHGEIRYPKLPVSVDGCDYDFD
NQTVHETIHEYRPSERNIYHLSFLWYTALGGFICTVVSVLAGFVFGWEDL
NKMDPALITPCMRRFLPNKNYEAVKMQDLFKRKDEIESQASFLDH

BO12382.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG42235-PC 689 CG42235-PC 1..689 1..689 3537 100 Plus
CG42235-PE 691 CG42235-PE 1..672 1..671 2349 68.5 Plus
CG42235-PB 695 CG42235-PB 1..685 1..678 2261 64.6 Plus
CG42235-PA 695 CG42235-PA 1..685 1..678 2247 64.3 Plus
CG42235-PD 698 CG42235-PD 1..680 1..678 2142 62.7 Plus