Clone Sequence Records
BO12384.3prime Sequence
907 bp (843 high quality bases) assembled on 2006-04-20
> BO12384.3prime
ATGGTCTAGAAAGCTTGCCCTCTGCAGAAAATCCCAGGGTATGCACACAA
CGCCGTCGGTCAGTACCGAATAGTAGTGGGTTATGTGAAGCTTGCATCCC
TGCAGTTCTTTCAACTGAAGCTGGTATAAATCTCTAAGGGATGTTATCAT
TTTATCCGGGGTTATGGCATCATCTTTGGTCAGCGATTGCAACTGTAGCT
GCTTTATGCACGAGTCCATCAGCTCCTGCTCGATGTGCTTGTCCTGAGCG
TACTTCTTCATACGCTCCCTGGCCAGCTCCAGATTTACACTGATGAAGTC
TACGAGTATGGATCCCGGACAGGTGGCTGGTGTGATAAACTGGCCCGTAG
GGCTTACCATCAGAGGACCTGCCTCTGATTCCACCACTATGGTAAACTCT
TTCAGCGTTTTCGGCCATTCCGGCGGATATTTTTGTTTGCCCAGGTAATC
GCTGAGCGAAGTGGTGACCTTCATGAGGTAGCTTGCATAGCCACTTGCCT
GTTGTTTGGGCATAAACTTGCGACGACCTATCTGGATGTTCAGTAGAACC
TGAGACAGTGTTCGTTCATACACGGGCACCACCTTTAAATAGGCATCGTG
GTGCGGAATGTTCTTGATGAAGTCAATCCATGTGCTGAGAACATCACCAG
TAAAAAGCATCACATGGCCTTCTAAACTGATGCCCGTAAAGGGAGCAAAA
ACCACTATGCGACCTTTCAGGGAAGCCATTTCCAACAAATGGGTGTTGGA
TAGTCGCTCAAGGGTCTTTAAACAGCCACGGTAGTGCTCAATGTTCCAGC
CGCACTCGTAACGAGCATCTTGCAACTCCAGTTTCTCTACCAGCATTTTT
TTCAGTTTGTCGATTTCGGCCTGCAGATCCGCAGTTTCCTTAGAGCGCTG
TTTGGCT
BO12384.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-PA | 1458 | CG13295-RA | 567..1455 | 907..19 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-RA | 1638 | CG13295-RA | 695..1583 | 907..19 | 4445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6073545..6074433 | 19..907 | 4445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:03:19 has no hits.
BO12384.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:23 Download gff for
BO12384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-PA | 567..1458 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:36 Download gff for
BO12384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-PA | 567..1458 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:07:16 Download gff for
BO12384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 695..1588 | 11..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:46:23 Download gff for
BO12384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 695..1588 | 11..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:46:23 Download gff for
BO12384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6073540..6074433 | 11..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:07:16 Download gff for
BO12384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6066640..6067533 | 11..907 | 99 | | Plus |
BO12384.5prime Sequence
871 bp (755 high quality bases) assembled on 2006-04-20
> BO12384.5prime
GAAGTTATCAGTCGACATGTCCATGTCGTTGGGCTCCAAGATCCGGAAAT
TGGTCACCAGCAGACGGCACTTCCTGCTTTTGCGCCGATCGCTGAACCAA
GATCTGACAACGGCGCTGAGACCCTTCTACTTCGCGGTGCATCCTGACTT
CTTTGCCCAGCATCCGGAGCAGAGGAACACCAACGAGAACTCACTGAAAT
TGCTGAGTGAGCATCTAGAGGCTTTGTATGAACGCAGACAGCGAAGCGGG
GACACCCAAGTGCTCAAGTTCTATGTACGCACCAGTTCAGATGCTGACAA
GCGAGACTCCTTCAAGCTCATCCAAATACGCACGGACTGGCAGAGTACCC
GAGATCCCAAAACCTTTATTCAAGGTCTTCTGGAGTCATGCAACTTGTCC
ACGGAGTATGTGAAGAACATTAAGGCCCAGCCTGAGCCGCCAAAAACCTC
TGGCTTGGATTTTAAACCAAGCCATGACTATCACTATGACATGGAGTTCG
CCGAGTTTGAAACTCAGTTGAAGAATGAACGTGCCAGTAAGCGTCCAGTG
CTGACCACCTGGCTGGAAGAGAATGCTGGCACAGCCAAACAGCGCTCTAA
GGAAACTGCGGATCTGCAGGCCGAAATCGACAAACTGAAAAAAATGCTGG
TAGAGAAACTGGAGTTGCAAGATGCTCGTTACGAGTGCGGCTGGAACATT
GAGCACTACCGTGGCTGTTTAAAGACCCTTGAGCGACTATCCAACACCCA
TTTGTTGGAAATGGCTTCCCTGAAAGGTCGCATAGTGGTTTTTGCTCCCT
TTACGGGCATCAGTTTAGAAGGCCATGTGATGCTTTTTACTGGTGATGTT
CTCAGCACATGGATTGACTTC
BO12384.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-PA | 1458 | CG13295-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-RA | 1638 | CG13295-RA | 129..983 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6074547..6074974 | 527..100 | 2140 | 100 | Minus |
| 3L | 28110227 | 3L | 6074145..6074489 | 871..527 | 1725 | 100 | Minus |
| 3L | 28110227 | 3L | 6075033..6075117 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:27:27 has no hits.
BO12384.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:24 Download gff for
BO12384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:38 Download gff for
BO12384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:49:16 Download gff for
BO12384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 125..983 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:03 Download gff for
BO12384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 125..983 | 9..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:03 Download gff for
BO12384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6074145..6074489 | 527..871 | 100 | <- | Minus |
| 3L | 6074548..6074972 | 102..526 | 100 | <- | Minus |
| 3L | 6075033..6075121 | 9..101 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:49:16 Download gff for
BO12384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6067245..6067589 | 527..871 | 100 | <- | Minus |
| arm_3L | 6067648..6068072 | 102..526 | 100 | <- | Minus |
| arm_3L | 6068133..6068221 | 9..101 | 95 | | Minus |
BO12384.complete Sequence
1489 bp assembled on 2006-10-11
GenBank Submission: FJ632426
> BO12384.complete
GAAGTTATCAGTCGACATGTCCATGTCGTTGGGCTCCAAGATCCGGAAAT
TGGTCACCAGCAGACGGCACTTCCTGCTTTTGCGCCGATCGCTGAACCAA
GATCTGACAACGGCGCTGAGACCCTTCTACTTCGCGGTGCATCCTGACTT
CTTTGCCCAGCATCCGGAGCAGAGGAACACCAACGAGAACTCACTGAAAT
TGCTGAGTGAGCATCTAGAGGCTTTGTATGAACGCAGACAGCGAAGCGGG
GACACCCAAGTGCTCAAGTTCTATGTACGCACCAGTTCAGATGCTGACAA
GCGAGACTCCTTCAAGCTCATCCAAATACGCACGGACTGGCAGAGTACCC
GAGATCCCAAAACCTTTATTCAAGGTCTTCTGGAGTCATGCAACTTGTCC
ACGGAGTATGTGAAGAACATTAAGGCCCAGCCTGAGCCGCCAAAAACCTC
TGGCTTGGATTTTAAACCAAGCCATGACTATCACTATGACATGGAGTTCG
CCGAGTTTGAAACTCAGTTGAAGAATGAACGTGCCAGTAAGCGTCCAGTG
CTGACCACCTGGCTGGAAGAGAATGCTGGCACAGCCAAACAGCGCTCTAA
GGAAACTGCGGATCTGCAGGCCGAAATCGACAAACTGAAAAAAATGCTGG
TAGAGAAACTGGAGTTGCAAGATGCTCGTTACGAGTGCGGCTGGAACATT
GAGCACTACCGTGGCTGTTTAAAGACCCTTGAGCGACTATCCAACACCCA
TTTGTTGGAAATGGCTTCCCTGAAAGGTCGCATAGTGGTTTTTGCTCCCT
TTACGGGCATCAGTTTAGAAGGCCATGTGATGCTTTTTACTGGTGATGTT
CTCAGCACATGGATTGACTTCATCAAGAACATTCCGCACCACGATGCCTA
TTTAAAGGTGGTGCCCGTGTATGAACGAACACTGTCTCAGGTTCTACTGA
ACATCCAGATAGGTCGTCGCAAGTTTATGCCCAAACAACAGGCAAGTGGC
TATGCAAGCTACCTCATGAAGGTCACCACTTCGCTCAGCGATTACCTGGG
CAAACAAAAATATCCGCCGGAATGGCCGAAAACGCTGAAAGAGTTTACCA
TAGTGGTGGAATCAGAGGCAGGTCCTCTGATGGTAAGCCCTACGGGCCAG
TTTATCACACCAGCCACCTGTCCGGGATCCATACTCGTAGACTTCATCAG
TGTAAATCTGGAGCTGGCCAGGGAGCGTATGAAGAAGTACGCTCAGGACA
AGCACATCGAGCAGGAGCTGATGGACTCGTGCATAAAGCAGCTACAGTTG
CAATCGCTGACCAAAGATGATGCCATAACCCCGGATAAAATGATAACATC
CCTTAGAGATTTATACCAGCTTCAGTTGAAAGAACTGCAGGGATGCAAGC
TTCACATAACCCACTACTATTCGGTACTGACCGACGGCGTTGTGTGCATA
CCCTGGGATTTTCTGCAGAGGGCAAGCTTTCTAGACCAT
BO12384.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-RA | 1458 | CG13295-PA | 1..1455 | 17..1471 | 7275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-RA | 1638 | CG13295-RA | 129..1583 | 17..1471 | 7275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6073545..6074489 | 1471..527 | 4725 | 100 | Minus |
| 3L | 28110227 | 3L | 6074547..6074974 | 527..100 | 2140 | 100 | Minus |
| 3L | 28110227 | 3L | 6075033..6075117 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:38:33 has no hits.
BO12384.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:07 Download gff for
BO12384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 1..1458 | 17..1472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:24 Download gff for
BO12384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 120..1583 | 9..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:16 Download gff for
BO12384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 129..1583 | 17..1473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:07 Download gff for
BO12384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 120..1583 | 9..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:43 Download gff for
BO12384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13295-RA | 129..1583 | 17..1473 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:43 Download gff for
BO12384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6073543..6074489 | 527..1473 | 99 | <- | Minus |
| 3L | 6074548..6074972 | 102..526 | 100 | <- | Minus |
| 3L | 6075033..6075117 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:16 Download gff for
BO12384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6066643..6067589 | 527..1473 | 99 | <- | Minus |
| arm_3L | 6067648..6068072 | 102..526 | 100 | <- | Minus |
| arm_3L | 6068133..6068217 | 17..101 | 100 | | Minus |
BO12384.pep Sequence
Translation from 16 to 1489
> BO12384.pep
MSMSLGSKIRKLVTSRRHFLLLRRSLNQDLTTALRPFYFAVHPDFFAQHP
EQRNTNENSLKLLSEHLEALYERRQRSGDTQVLKFYVRTSSDADKRDSFK
LIQIRTDWQSTRDPKTFIQGLLESCNLSTEYVKNIKAQPEPPKTSGLDFK
PSHDYHYDMEFAEFETQLKNERASKRPVLTTWLEENAGTAKQRSKETADL
QAEIDKLKKMLVEKLELQDARYECGWNIEHYRGCLKTLERLSNTHLLEMA
SLKGRIVVFAPFTGISLEGHVMLFTGDVLSTWIDFIKNIPHHDAYLKVVP
VYERTLSQVLLNIQIGRRKFMPKQQASGYASYLMKVTTSLSDYLGKQKYP
PEWPKTLKEFTIVVESEAGPLMVSPTGQFITPATCPGSILVDFISVNLEL
ARERMKKYAQDKHIEQELMDSCIKQLQLQSLTKDDAITPDKMITSLRDLY
QLQLKELQGCKLHITHYYSVLTDGVVCIPWDFLQRASFLDH
BO12384.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13295-PA | 485 | CG13295-PA | 1..485 | 1..485 | 2524 | 100 | Plus |
| CG2854-PA | 491 | CG2854-PA | 5..489 | 11..485 | 763 | 37.4 | Plus |
