Clone Sequence Records
BO12386.complete Sequence
2284 bp assembled on 2010-04-13
GenBank Submission: KX799029
> BO12386.complete
GAAGTTATCAGTCGACATGTGCAATTTGTTTTGGCTTTCGGCCTGTTTTT
TGGCCCTCTGTCTGCCCCATGCCCTCAGCGAATCCAATGCCACAAGTGTT
GAGGGGACGCCTAAGACTGAGTCAAAAGCAGAGCTGGTGCCCACGGCGGA
GAAACTAATCCGATATCGCCGTCAGCCTCCCTACGCCGTGATCAAGCGCT
CCAAGCTGCGCCGGCGGACTAAGGGTCATCCGAAGATTAAGTACGGACCA
CCACCGCCCCACATTCGCTACTCGAAACCATCATTCCCTGCCCATACCCA
TATCGAGGAGCCAAGCTTCTCCCTCGATGACTTTCAGCACCTGAAGTTCG
ATGGTGCGGACTTTAAGATACCCACTTCCAGTTACGAAGCGCAGTCCATG
GATCTGGACTTCTACAATCACGATACGGAACCGGATCTCTATGGAGCACA
CAAATTCCCTAGCCTGGACTTTGGCTTAGTCACCACACATGAGCATGTTC
CTCACCAACAGTACGGGTTGCCTCCTGTGCAGCAGAGCTTCCAGCCAGAT
CACTCTTTTACTACGCACTATGAGCCACCTCCAGCTCCGGCTCATCCGCC
GGCTACCCGCTATGGAGTACCCGACGCTCCTGCTCCAGTGCCCAGCTATC
CACATCAGGATCTGCCAGCTCCTGACTCCTATTCCATATATGAGCAGAAG
ATTCCCAATGTGGGCTACCATCAGAACTTTGCGGAACCACCCAAGCATCC
CCCCAAACATGGTTCCATCAATAATCCTAACTTTGAGATCGCCTATTCTC
CGCCCGCATTCGAGATCAGCACTTCCTATCAGTCCAATCACCAGCAGAGC
TACGTTCCACCCCATCCCCCATCATCTCATGATGGGTTCGCGGAGCCACC
GTCTAATAATTATGTGAAGCCTCCTCCCCAGCACCCTCCAACTAATAGTT
ACGCACCACCCCAACATCCTTCTTCGAGCTATGACCAGCCACCGCAGCAT
CCATCATCGAGTTATGACCAGCCGCCACAGCATCCTCCTCCCAGCTATAG
TCAGCCTCCCCAACACCCTTCTTCTAGTTATGATCAACCTGCTCAACATC
CCTCATCCAGTTATGATCAACCTCCTAAACATCCGTCTTCCAGTTACGAA
CAACCTCCCCAGCATCCCTCCTCCAGTTACGATCAACCTCCCCAACATCC
CTCCTCCAGTTATGATCAACCTCCTGAGGAGCACCCAAGCTCCTACCAAC
ATCCTCCAACATCCACATATGATCAGGCACCCCAGCATCCACCATCAAAC
TATGTTTCCTCCGATTCCCATTCCATCAATACATATCCGCAGGACGATTA
CTCACCACCGTCGCAGGAGTTGCCCTTAAATCCACACCACAAGTTTCCTA
GTTTCGATTTCCCCAAATCCAGCTACGAAGTGCCCATCTACGATCCCGTT
CCTTTCGAAGCCTCCAATCGCGATGAACAGGAGTCCTATCCACCCATCTT
GGCATCCTCTCCCGATCTGAATGAGATAACTTCAGATGCCCATGCGGCTG
GTAGTTCCAAGCGGCGTAAGAGAAAGCGAAAGCCCAGTCCTGGAGTTGTC
CCCGCAAAGCATACGCTTGATGTTCCTGAGCTCCAGCAGGCCTATGATGC
GGATAGCCACTTGGGGGAGTCACACGAGTCAAATGCAGATACGGATGCAA
ATAGTTCTCACTATGTGGAGAGGAAGCAGAGCTTTTTCAACTTTGTCACG
CCCACAACAACGACGTCGACGACTCCGGCTCCTTGGACTCCAATGAGGGG
CAGGGGTAGTACGACCCGTGCGGCATTCATACCAACCATTGTAACAAGTA
CTCCGAAAACACCCACTACTGATCGCAGTAGACATCGTGGCTCTTCTCGG
TATCGCACAAAGCAGCAACCCGGAAATCCCAGTTCATCCGATCCCACCAA
TACCAGCGTTCAAATCGATCAATCCCACTCGCAAAGCTATTACGATGGAA
CCATTGCACCACCGACCAGGCAACAGTTTTCACCCACAACCGGAGGACGT
GGCTCGAGACCGACAAGACCAAGTTACGTCAGAAATCACGGCCCGGTGTC
ACCGCTGGCATTGCAGCCCGCCGATGGTAGGGGTCCATCCACATCCAAGC
GGACTACTAAGGGCGTCTTCGACACGACGCTGTTCAAGAGTCCCCTCAGC
GATAGGGAGATGGAGAGAAATCTCCATGGGCTGCGTCAGAACTTGCCAAA
AAATCATAAACTATTCGCAAGCTTTCTAGACCAT
BO12386.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15005-RA | 2253 | CG15005-PA | 1..2250 | 17..2266 | 11250 | 100 | Plus |
| CG15005-RA | 2253 | CG15005-PA | 940..1175 | 989..1224 | 475 | 80.1 | Plus |
| CG15005-RA | 2253 | CG15005-PA | 973..1208 | 956..1191 | 475 | 80.1 | Plus |
| CG15005-RA | 2253 | CG15005-PA | 943..1110 | 1058..1225 | 315 | 79.2 | Plus |
| CG15005-RA | 2253 | CG15005-PA | 1042..1209 | 959..1126 | 315 | 79.2 | Plus |
| CG15005-RA | 2253 | CG15005-PA | 949..1142 | 1031..1224 | 295 | 76.8 | Plus |
| CG15005-RA | 2253 | CG15005-PA | 1015..1208 | 965..1158 | 295 | 76.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15005-RA | 2648 | CG15005-RA | 223..2472 | 17..2266 | 11250 | 100 | Plus |
| CG15005-RA | 2648 | CG15005-RA | 1162..1397 | 989..1224 | 475 | 80.1 | Plus |
| CG15005-RA | 2648 | CG15005-RA | 1195..1430 | 956..1191 | 475 | 80.1 | Plus |
| CG15005-RA | 2648 | CG15005-RA | 1165..1332 | 1058..1225 | 315 | 79.2 | Plus |
| CG15005-RA | 2648 | CG15005-RA | 1264..1431 | 959..1126 | 315 | 79.2 | Plus |
| CG15005-RA | 2648 | CG15005-RA | 1171..1364 | 1031..1224 | 295 | 76.8 | Plus |
| CG15005-RA | 2648 | CG15005-RA | 1237..1430 | 965..1158 | 295 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4201001..4203217 | 2266..50 | 11085 | 100 | Minus |
| 3L | 28110227 | 3L | 4202043..4202278 | 1191..956 | 475 | 80.1 | Minus |
| 3L | 28110227 | 3L | 4202076..4202311 | 1224..989 | 475 | 80.1 | Minus |
| 3L | 28110227 | 3L | 4202141..4202308 | 1225..1058 | 315 | 79.2 | Minus |
| 3L | 28110227 | 3L | 4202042..4202209 | 1126..959 | 315 | 79.2 | Minus |
| 3L | 28110227 | 3L | 4202043..4202236 | 1158..965 | 295 | 76.8 | Minus |
| 3L | 28110227 | 3L | 4202109..4202302 | 1224..1031 | 295 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:25:03 has no hits.
BO12386.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:45 Download gff for
BO12386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-RA | 222..2471 | 17..2268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:35 Download gff for
BO12386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-RA | 223..2472 | 17..2268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:10 Download gff for
BO12386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-RA | 223..2472 | 17..2268 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:10 Download gff for
BO12386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4200998..4203217 | 50..2268 | 99 | <- | Minus |
| 3L | 4204085..4204117 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:35 Download gff for
BO12386.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4200998..4203217 | 50..2268 | 99 | <- | Minus |
| arm_3L | 4204085..4204117 | 17..49 | 100 | | Minus |
BO12386.3prime Sequence
608 bp (513 high quality bases) assembled on 2006-04-20
> BO12386.3prime
ATGGTCTAGAAAGCTTGCGAATAGTTTATGATTTTTTGGCAAGTTCTGAC
GCAGCCCATGGAGATTTCTCTCCATCTCCCTATCGCTGAGGGGACTCTTG
AACAGCGTCGTGTCGAAGACGCCCTTAGTAGTCCGCTTGGATGTGGATGG
ACCCCTACCATCGGCGGGCTGCAATGCCAGCGGTGACACCGGGCCGTGAT
TTCTGACGTAACTTGGTCTTGTCGGTCTCGAGCCACGTCCTCCGGTTGTG
GGTGAAAACTGTTGCCTGGTCGGTGGTGCAATGGTTCCATCGTAATAGCT
TTGCGAGTGGGATTGATCGATTTGAACGCTGGTATTGGTGGGATCGGATG
AACTGGGATTTCCGGGTTGCTGCTTTGTGCGATACCGAGAAGAGCCACGA
TGTCTACTGCGATCAGTAGTGGGTGTTTTCGGAGTACTTGTTACAATGGT
TGGTATGAATGCCGCACGGGTCGTACTACCCCTGCCCCTCATTGGAGTCC
AAGGAGCCGGAGTCGTCTACGTCGTTGTTGTGGGCGTGACAAACTCGAAA
AAGCTCTGCTACCTCTCCACATAGCGAGAACTATTTGCATCCGTATCTGC
ATTTGTAC
BO12386.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15005-PA | 2253 | CG15005-RA | 1664..2250 | 605..19 | 2810 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15005-RA | 2648 | CG15005-RA | 1886..2472 | 605..19 | 2860 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4201001..4201587 | 19..605 | 2860 | 99.1 | Plus |
Blast to na_te.dros performed 2015-02-10 22:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker | 7256 | Stalker STALKER 7256bp | 740..855 | 184..64 | 114 | 59.5 | Minus |
BO12386.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:27 Download gff for
BO12386.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-PA | 1662..2253 | 16..608 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:42 Download gff for
BO12386.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-PA | 1662..2253 | 16..608 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:14 Download gff for
BO12386.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-RA | 1884..2478 | 11..608 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:23 Download gff for
BO12386.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-RA | 1884..2478 | 11..608 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:23 Download gff for
BO12386.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4200995..4201589 | 11..608 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:14 Download gff for
BO12386.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4200995..4201589 | 11..608 | 98 | | Plus |
BO12386.5prime Sequence
868 bp (799 high quality bases) assembled on 2006-04-20
> BO12386.5prime
GAAGTTATCAGTCGACATGTGCAATTTGTTTTGGCTTTCGGCCTGTTTTT
TGGCCCTCTGTCTGCCCCATGCCCTCAGCGAATCCAATGCCACAAGTGTT
GAGGGGACGCCTAAGACTGAGTCAAAAGCAGAGCTGGTGCCCACGGCGGA
GAAACTAATCCGATATCGCCGTCAGCCTCCCTACGCCGTGATCAAGCGCT
CCAAGCTGCGCCGGCGGACTAAGGGTCATCCGAAGATTAAGTACGGACCA
CCACCGCCCCACATTCGCTACTCGAAACCATCATTCCCTGCCCATACCCA
TATCGAGGAGCCAAGCTTCTCCCTCGATGACTTTCAGCACCTGAAGTTCG
ATGGTGCGGACTTTAAGATACCCACTTCCAGTTACGAAGCGCAGTCCATG
GATCTGGACTTCTACAATCACGATACGGAACCGGATCTCTATGGAGCACA
CAAATTCCCTAGCCTGGACTTTGGCTTAGTCACCACACATGAGCATGTTC
CTCACCAACAGTACGGGTTGCCTCCTGTGCAGCAGAGCTTCCAGCCAGAT
CACTCTTTTACTACGCACTATGAGCCACCTCCAGCTCCGGCTCATCCGCC
GGCTACCCGCTATGGAGTACCCGACGCTCCTGCTCCAGTGCCCAGCTATC
CACATCAGGATCTGCCAGCTCCTGACTCCTATTCCATATATGAGCAGAAG
ATTCCCAATGTGGGCTACCATCAGAACTTTGCGGAACCACCCAAGCATCC
CCCCAAACATGGTTCCATCAATAATCCTAACTTTGAGATCGCCTATTCTC
CGCCCGCATTCGAGATCAGCACTTCCTATCAGTCCAATCACCAGCAGAGC
TACGTTCCACCCCATCCC
BO12386.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15005-PA | 2253 | CG15005-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15005-RA | 2648 | CG15005-RA | 223..1074 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4202399..4203217 | 868..50 | 4095 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:44:24 has no hits.
BO12386.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:28 Download gff for
BO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:43 Download gff for
BO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:20:31 Download gff for
BO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-RA | 218..1074 | 12..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:39 Download gff for
BO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15005-RA | 218..1074 | 12..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:39 Download gff for
BO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4202399..4203217 | 50..868 | 100 | <- | Minus |
| 3L | 4204085..4204122 | 12..49 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:20:31 Download gff for
BO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4202399..4203217 | 50..868 | 100 | <- | Minus |
| arm_3L | 4204085..4204122 | 12..49 | 94 | | Minus |
BO12386.pep Sequence
Translation from 16 to 2284
> BO12386.pep
MCNLFWLSACFLALCLPHALSESNATSVEGTPKTESKAELVPTAEKLIRY
RRQPPYAVIKRSKLRRRTKGHPKIKYGPPPPHIRYSKPSFPAHTHIEEPS
FSLDDFQHLKFDGADFKIPTSSYEAQSMDLDFYNHDTEPDLYGAHKFPSL
DFGLVTTHEHVPHQQYGLPPVQQSFQPDHSFTTHYEPPPAPAHPPATRYG
VPDAPAPVPSYPHQDLPAPDSYSIYEQKIPNVGYHQNFAEPPKHPPKHGS
INNPNFEIAYSPPAFEISTSYQSNHQQSYVPPHPPSSHDGFAEPPSNNYV
KPPPQHPPTNSYAPPQHPSSSYDQPPQHPSSSYDQPPQHPPPSYSQPPQH
PSSSYDQPAQHPSSSYDQPPKHPSSSYEQPPQHPSSSYDQPPQHPSSSYD
QPPEEHPSSYQHPPTSTYDQAPQHPPSNYVSSDSHSINTYPQDDYSPPSQ
ELPLNPHHKFPSFDFPKSSYEVPIYDPVPFEASNRDEQESYPPILASSPD
LNEITSDAHAAGSSKRRKRKRKPSPGVVPAKHTLDVPELQQAYDADSHLG
ESHESNADTDANSSHYVERKQSFFNFVTPTTTTSTTPAPWTPMRGRGSTT
RAAFIPTIVTSTPKTPTTDRSRHRGSSRYRTKQQPGNPSSSDPTNTSVQI
DQSHSQSYYDGTIAPPTRQQFSPTTGGRGSRPTRPSYVRNHGPVSPLALQ
PADGRGPSTSKRTTKGVFDTTLFKSPLSDREMERNLHGLRQNLPKNHKLF
ASFLDH
BO12386.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15005-PA | 750 | CG15005-PA | 1..750 | 1..750 | 4147 | 100 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 192..835 | 23..710 | 378 | 28.2 | Plus |
| Muc91C-PA | 950 | CG7709-PA | 193..836 | 23..710 | 378 | 28.2 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 116..767 | 53..686 | 372 | 28.8 | Plus |
| Muc91C-PA | 950 | CG7709-PA | 117..768 | 53..686 | 372 | 28.8 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 338..941 | 72..546 | 290 | 27.6 | Plus |
| Muc91C-PA | 950 | CG7709-PA | 339..942 | 72..546 | 290 | 27.6 | Plus |
| CG13722-PB | 708 | CG13722-PB | 338..663 | 162..499 | 286 | 28.9 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 115..531 | 292..710 | 280 | 28.2 | Plus |
| Muc91C-PA | 950 | CG7709-PA | 116..532 | 292..710 | 280 | 28.2 | Plus |
| CG13722-PB | 708 | CG13722-PB | 224..562 | 164..494 | 258 | 26.8 | Plus |
| CG13722-PB | 708 | CG13722-PB | 72..455 | 162..499 | 246 | 25.9 | Plus |
| Vml-PB | 578 | CG34333-PB | 34..545 | 147..687 | 235 | 25.2 | Plus |
| CG13722-PB | 708 | CG13722-PB | 402..695 | 159..482 | 232 | 28.3 | Plus |
