Clone Sequence Records
BO12387.complete Sequence
1255 bp assembled on 2009-09-17
GenBank Submission: FJ632427
> BO12387.complete
GAAGTTATCAGTCGACATGATCCACTGGAGACTTCTTTCCGCCCTACTTG
TGGGCCTGGCTATAGCTTTAACGCTTCCAGTCGACGGGGAGCTCTTGGCC
AGATCGCCGGCCAGCGTCTCGAGTAACCGCTTTGGCCTACGCCTAACTAC
TAAGTTGGGACTAACTCAACCAGATGCAAATGTGGTGGTTTCCCCCTTGC
TTATACAGGCGGCGCTCAGCCTGCTGTATGCGGAAAGTTCTTCGGAGTAC
GGTAGCCAACTCCGCCAGGCTCTGGAGCTGACCCACGCCAGTCACCCGAA
GCTTGCGGTGCAGGACTTCGAGACCCTTTTGACGGACCTCAAGCAGTCGG
CTGCCATTGGCTGTCGCTTGCGGTTGCTGAGTGACCTCTACGCACAGCAG
CGCTTCACCTTCAACTTCCGCAATGAATTCGAGACCTTGGCCGCCCGAAT
GGGCGTCGGCTGCCACCGCTTGTCGTGGGAAAGTGCGTCGAACGCGGCCC
AGGATATCAACTACGCCTTCCTTAGCCGCAGCAACTTCAGCCTGGGGGAG
CTCGTCAGTGCCCCCCAACTCGAGTCCTTGGCCGAGCACAACACGCCCTT
TTTACACGTCTCGGGAGTCACCTTCCGAGCCCCTTGGGCTTGGGCCTTCG
ATCCTACCGAGACGCAGAGCATCAACTTCTTTGCCGGGGGAAATCGCCCC
AGGCTGGTGGATGCCATGTTCGGACAGCACCGCTACAGGTACGCTGAAGT
GCCCGCTCTGGACGCCCAGCTCATTGAGGTGCCCTTCGCCACTGCAGACC
TCCGAATGCTCATTGTATTTCCCAATCGGCCTGATGGCCTGGCCCAACTT
GAGAGGAAGCTGGCGCAGTCCGATCTCCACCAGCTAAGGTCCCAGCTCGA
GGAGCGCAAGGTGGCCCTCACTCTGCCCAAGCTCAGAGTGCTAGTCCACT
CCGACCTGAAGCACGTGCTCGAGGAGTTGGGTCTGGCAAAACTATTCACA
TCGGAGGTCCACCTGAGCGAGGTCTTCAGCTCCATCCTGTCCAGTTCGGC
TCCACCCTTGGGAGCAGTGGTCCAGAGTGGTCTCCTGGAGCTACAGGAGG
ATGGCGGCAATGCCGACGACTCGTTCTCCTTCGGGGATCTGTTCCGACGA
GCCCTGCCCCTGGTCATCAATCACCCGTTCTTTTACGCCATCGGCAATGG
CAAAACTCTGCTGCTGTCCGGCCACATCGTCGACATCGCAAGCTTTCTAG
ACCAT
BO12387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-RA | 1224 | CG1859-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-RA | 1432 | CG1859-RA | 65..1300 | 15..1250 | 6120 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7154399..7155360 | 976..15 | 4810 | 100 | Minus |
| 2R | 25286936 | 2R | 7154050..7154202 | 1127..975 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 7153870..7153992 | 1250..1128 | 555 | 96.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:38:14 has no hits.
BO12387.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:28 Download gff for
BO12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 1..1224 | 17..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:19:58 Download gff for
BO12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 65..1285 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:23 Download gff for
BO12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 67..1287 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:21 Download gff for
BO12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 65..1285 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:18 Download gff for
BO12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 67..1287 | 17..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:18 Download gff for
BO12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7153880..7153992 | 1128..1239 | 98 | <- | Minus |
| 2R | 7154050..7154200 | 977..1127 | 100 | <- | Minus |
| 2R | 7154399..7155358 | 17..976 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:23 Download gff for
BO12387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3041385..3041497 | 1128..1239 | 98 | <- | Minus |
| arm_2R | 3041555..3041705 | 977..1127 | 100 | <- | Minus |
| arm_2R | 3041904..3042863 | 17..976 | 100 | | Minus |
BO12387.3prime Sequence
840 bp (771 high quality bases) assembled on 2006-04-20
> BO12387.3prime
ATGGTCTAGAAAGCTTGCGATGTCGACGATGTGGCCGGACAGCAGCAGAG
TTTTGCCATTGCCGATGGCGTAAAAGAACGGGTGATTGATGACCAGGGGC
AGGGCTCGTCGGAACAGATCCCCGAAGGAGAACGAGTCGTCGGCATTGCC
GCCATCCTCCTGTAGCTCCAGGAGACCACTCTGGACCACTGCTCCCAAGG
GTGGAGCCGAACTGGACAGGATGGAGCTGAAGACCTCGCTCAGGTGGACC
TCCGATGTGAATAGTTTTGCCAGACCCAACTCCTCGAGCACGTGCTTCAG
GTCGGAGTGGACTAGCACTCTGAGCTTGGGCAGAGTGAGGGCCACCTTGC
GCTCCTCGAGCTGGGACCTTAGCTGGTGGAGATCGGACTGCGCCAGCTTC
CTCTCAAGTTGGGCCAGGCCATCAGGCCGATTGGGAAATACAATGAGCAT
TCGGAGGTCTGCAGTGGCGAAGGGCACCTCAATGAGCTGGGCGTCCAGAG
CGGGCACTTCAGCGTACCTGTAGCGGTGCTGTCCGAACATGGCATCCACC
AGCCTGGGGCGATTTCCCCCGGCAAAGAAGTTGATGCTCTGCGTCTCGGT
AGGATCGAAGGCCCAAGCCCAAGGGGCTCGGAAGGTGACTCCCGAGACGT
GTAAAAAGGGCGTGTTGTGCTCGGCCAAGGACTCGAGTTGGGGGGCACTG
ACGAGCTCCCCCAGGCTGAAGTTGCTGCGGCTAAGGAAGGCGTAGTTGAT
ATCCTGGGCCGCGTTCGACGCACTTTCCCACGACAAGCGGTGGCAGCCGA
CGCCCATTCGGGCGGCCAAGGTCTCGAATTCATTGCGGAA
BO12387.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1859-PA | 1224 | Spn43Ad-RA | 400..1221 | 840..19 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-RA | 1432 | CG1859-RA | 466..1300 | 840..6 | 4115 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7154399..7154959 | 280..840 | 2805 | 100 | Plus |
| 2R | 25286936 | 2R | 7154050..7154202 | 129..281 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 7153870..7153992 | 6..128 | 555 | 96.7 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:54:29 has no hits.
BO12387.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:29 Download gff for
BO12387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1859-PA | 402..1224 | 16..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:45 Download gff for
BO12387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1859-PA | 402..1224 | 16..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:05:22 Download gff for
BO12387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 466..1300 | 6..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:44:59 Download gff for
BO12387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 466..1300 | 6..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:44:59 Download gff for
BO12387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7153870..7153992 | 6..128 | 96 | <- | Plus |
| 2R | 7154050..7154200 | 129..279 | 100 | <- | Plus |
| 2R | 7154399..7154959 | 280..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:05:22 Download gff for
BO12387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3041375..3041497 | 6..128 | 96 | <- | Plus |
| arm_2R | 3041555..3041705 | 129..279 | 100 | <- | Plus |
| arm_2R | 3041904..3042464 | 280..840 | 100 | | Plus |
BO12387.5prime Sequence
810 bp (802 high quality bases) assembled on 2006-04-20
> BO12387.5prime
GAAGTTATCAGTCGACATGATCCACTGGAGACTTCTTTCCGCCCTACTTG
TGGGCCTGGCTATAGCTTTAACGCTTCCAGTCGACGGGGAGCTCTTGGCC
AGATCGCCGGCCAGCGTCTCGAGTAACCGCTTTGGCCTACGCCTAACTAC
TAAGTTGGGACTAACTCAACCAGATGCAAATGTGGTGGTTTCCCCCTTGC
TTATACAGGCGGCGCTCAGCCTGCTGTATGCGGAAAGTTCTTCGGAGTAC
GGTAGCCAACTCCGCCAGGCTCTGGAGCTGACCCACGCCAGTCACCCGAA
GCTTGCGGTGCAGGACTTCGAGACCCTTTTGACGGACCTCAAGCAGTCGG
CTGCCATTGGCTGTCGCTTGCGGTTGCTGAGTGACCTCTACGCACAGCAG
CGCTTCACCTTCAACTTCCGCAATGAATTCGAGACCTTGGCCGCCCGAAT
GGGCGTCGGCTGCCACCGCTTGTCGTGGGAAAGTGCGTCGAACGCGGCCC
AGGATATCAACTACGCCTTCCTTAGCCGCAGCAACTTCAGCCTGGGGGAG
CTCGTCAGTGCCCCCCAACTCGAGTCCTTGGCCGAGCACAACACGCCCTT
TTTACACGTCTCGGGAGTCACCTTCCGAGCCCCTTGGGCTTGGGCCTTCG
ATCCTACCGAGACGCAGAGCATCAACTTCTTTGCCGGGGGAAATCGCCCC
AGGCTGGTGGATGCCATGTTCGGACAGCACCGCTACAGGTACGCTGAAGT
GCCCGCTCTGGACGCCCAGCTCATTGAGGTGCCCTTCGCCACTGCAGACC
TCCGAATGCT
BO12387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1859-PA | 1224 | Spn43Ad-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-RA | 1432 | CG1859-RA | 65..860 | 15..810 | 3980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7154565..7155360 | 810..15 | 3980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:42:40 has no hits.
BO12387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:30 Download gff for
BO12387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1859-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:46 Download gff for
BO12387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1859-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:23 Download gff for
BO12387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 61..860 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:57 Download gff for
BO12387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 61..860 | 9..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:57 Download gff for
BO12387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7154565..7155364 | 9..810 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:23 Download gff for
BO12387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3042070..3042869 | 9..810 | 99 | | Minus |
BO12387.pep Sequence
Translation from 16 to 1255
> BO12387.pep
MIHWRLLSALLVGLAIALTLPVDGELLARSPASVSSNRFGLRLTTKLGLT
QPDANVVVSPLLIQAALSLLYAESSSEYGSQLRQALELTHASHPKLAVQD
FETLLTDLKQSAAIGCRLRLLSDLYAQQRFTFNFRNEFETLAARMGVGCH
RLSWESASNAAQDINYAFLSRSNFSLGELVSAPQLESLAEHNTPFLHVSG
VTFRAPWAWAFDPTETQSINFFAGGNRPRLVDAMFGQHRYRYAEVPALDA
QLIEVPFATADLRMLIVFPNRPDGLAQLERKLAQSDLHQLRSQLEERKVA
LTLPKLRVLVHSDLKHVLEELGLAKLFTSEVHLSEVFSSILSSSAPPLGA
VVQSGLLELQEDGGNADDSFSFGDLFRRALPLVINHPFFYAIGNGKTLLL
SGHIVDIASFLDH
BO12387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-PA | 407 | CG1859-PA | 1..407 | 1..407 | 2049 | 100 | Plus |
| Spn42Da-PL | 379 | CG9453-PL | 16..376 | 39..404 | 361 | 28.5 | Plus |
| Spn42Da-PK | 379 | CG9453-PK | 16..376 | 39..404 | 361 | 28.5 | Plus |
| Spn42Da-PH | 379 | CG9453-PH | 16..376 | 39..404 | 361 | 28.5 | Plus |
| Spn42Da-PG | 379 | CG9453-PG | 16..376 | 39..404 | 361 | 29 | Plus |
