Clone Sequence Records
BO12390.3prime Sequence
779 bp (778 high quality bases) assembled on 2006-04-20
> BO12390.3prime
ATGGTCTAGAAAGCTTGCCTTTTTCTGTTTCTTCTTCTCGAGCTCCTCCT
CCTTCTCCTTCTCGATGATCTTAACATAATCGGTAATGACATCGGTGTCC
AGCATTTTCAGTGGCTTGCCGTTCTCCATGATGGCCACCTCCAGATTGTT
CTGGCCTGACTGCGCCACCTCGAGCAGCGCACGGATGGCCAGTTTGACGG
CTCCGTGCTCGTTGGCCACCTCCTCCTCGCGGTAGGACTTCTCGAAGAAC
TCGCGCACAACCTTTGCCGATCGCCCGGTGGCGTTAGCCTTATACTCGTA
GAAAATGCCCGACGGCTCAGTCTGGAACAGATGCGCAGAGCCATCGGCAT
CGAAGCCGCCAATAAGGCAGGAAATACCGAAGGGACGGCGGCCATTGCTC
TGCGTGTATTTTTGTTTCAGCTGGGCAATGAATCTGGTTATGTACTCGAG
GGTCACGGGATCCTCGACATTGAGACGATGGCTCTGGCACTCCACCTGGG
CACGATTGATCATGATGCGAGCGTCGGCCGTGAGACCGGCAAAAGCCATT
ACAACGTGGTTGTCGAGCATGCAAATCTTGCGCACCTTTCGATCCTCCTG
CAGTTGGGCCACCGACTTCTTCTCCACGCCAAGCACAACGCAGTTGGCGC
CGCGAACTCCGACCGCAGTCGATCCCTTGCGAACGGCCTCCTGGGCATAC
TCCACCTGCAGGAGGTGACCGTCGGGAGAGAATATGGTTACAGCACGATC
GTAGCGTGAGGACATGTCGACTGATAACT
BO12390.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3422-PA | 750 | Pros28.1-RA | 1..747 | 765..19 | 3735 | 100 | Minus |
CG4569-PA | 759 | Pros28.1B-RA | 40..83 | 726..683 | 170 | 95.4 | Minus |
CG4569-PA | 759 | Pros28.1B-RA | 319..374 | 447..392 | 155 | 91 | Minus |
CG4569-PA | 759 | Pros28.1B-RA | 180..212 | 586..554 | 140 | 96.9 | Minus |
CG17268-PA | 750 | Pros28.1A-RA | 310..392 | 456..374 | 140 | 86.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha4-RA | 1176 | CG3422-RA | 149..895 | 765..19 | 3735 | 100 | Minus |
Prosalpha4T1-RA | 891 | CG17268-RA | 57..726 | 765..96 | 1175 | 78.9 | Minus |
Prosalpha4T2-RB | 1254 | CG4569-RB | 103..581 | 753..275 | 880 | 79.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16276890..16277306 | 435..19 | 2085 | 100 | Minus |
3R | 32079331 | 3R | 20748349..20749018 | 96..765 | 1175 | 78.4 | Plus |
X | 23542271 | X | 16276596..16276826 | 664..434 | 1155 | 100 | Minus |
X | 23542271 | X | 16276418..16276521 | 765..662 | 520 | 100 | Minus |
2R | 25286936 | 2R | 24501794..24501988 | 436..630 | 390 | 80 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:23:30 has no hits.
BO12390.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:35 Download gff for
BO12390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3422-PA | 1..750 | 15..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:54 Download gff for
BO12390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3422-PA | 1..750 | 15..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:26:28 Download gff for
BO12390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha4-RA | 142..898 | 15..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:46 Download gff for
BO12390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha4-RA | 142..898 | 15..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:46 Download gff for
BO12390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16276418..16276519 | 664..765 | 100 | -> | Minus |
X | 16276597..16276826 | 434..663 | 100 | -> | Minus |
X | 16276892..16277309 | 15..433 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:26:28 Download gff for
BO12390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16170451..16170552 | 664..765 | 100 | -> | Minus |
arm_X | 16170630..16170859 | 434..663 | 100 | -> | Minus |
arm_X | 16170925..16171342 | 15..433 | 99 | | Minus |
BO12390.5prime Sequence
779 bp (748 high quality bases) assembled on 2006-04-20
> BO12390.5prime
GAAGTTATCAGTCGACATGTCCTCACGCTACGATCGTGCTGTAACCATAT
TCTCTCCCGACGGTCACCTCCTGCAGGTGGAGTATGCCCAGGAGGCCGTT
CGCAAGGGATCGACTGCGGTCGGAGTTCGCGGCGCCAACTGCGTTGTGCT
TGGCGTGGAGAAGAAGTCGGTGGCCCAACTGCAGGAGGATCGAAAGGTGC
GCAAGATTTGCATGCTCGACAACCACGTTGTAATGGCTTTTGCCGGTCTC
ACGGCCGACGCTCGCATCATGATCAATCGTGCCCAGGTGGAGTGCCAGAG
CCATCGTCTCAATGTCGAGGATCCCGTGACCCTCGAGTACATAACCAGAT
TCATTGCCCAGCTGAAACAAAAATACACGCAGAGCAATGGCCGCCGTCCC
TTCGGTATTTCCTGCCTTATTGGCGGCTTCGATGCCGATGGCTCTGCGCA
TCTGTTCCAGACTGAGCCGTCGGGCATTTTCTACGAGTATAAGGCTAACG
CCACCGGGCGATCGGCAAAGGTTGTGCGCGAGTTCTTCGAGAAGTCCTAC
CGCGAGGAGGAGGTGGCCAACGAGCACGGAGCCGTCAAACTGGCCATCCG
TGCGCTGCTCGAGGTGGCGCAGTCAGGCCAGAACAATCTGGAGGTGGCCA
TCATGGAGAACGGCAAGCCACTGAAAATGCTGGACACCGATGTCATTACC
GATTATGTTAAGATCATCGAGAAGGAGAAGGAGGAGGAGCTCGAGAAGAA
GAAACAGAAAAAGGCAAGCTTTCTAGACC
BO12390.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3422-PA | 750 | Pros28.1-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
CG4569-PA | 759 | Pros28.1B-RA | 40..83 | 56..99 | 170 | 95.4 | Plus |
CG4569-PA | 759 | Pros28.1B-RA | 319..374 | 335..390 | 155 | 91 | Plus |
CG4569-PA | 759 | Pros28.1B-RA | 180..212 | 196..228 | 140 | 96.9 | Plus |
CG17268-PA | 750 | Pros28.1A-RA | 310..392 | 326..408 | 140 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha4-RA | 1176 | CG3422-RA | 149..895 | 17..763 | 3735 | 100 | Plus |
Prosalpha4T1-RA | 891 | CG17268-RA | 57..726 | 17..686 | 1175 | 78.9 | Plus |
Prosalpha4T2-RB | 1254 | CG4569-RB | 103..581 | 29..507 | 880 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16276890..16277306 | 347..763 | 2085 | 100 | Plus |
3R | 32079331 | 3R | 20748349..20749018 | 686..17 | 1175 | 78.4 | Minus |
X | 23542271 | X | 16276596..16276826 | 118..348 | 1155 | 100 | Plus |
X | 23542271 | X | 16276418..16276521 | 17..120 | 520 | 100 | Plus |
2R | 25286936 | 2R | 24501794..24501988 | 346..152 | 390 | 80 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:31:17 has no hits.
BO12390.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:36 Download gff for
BO12390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3422-PA | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:55 Download gff for
BO12390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3422-PA | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:12:25 Download gff for
BO12390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha4-RA | 142..898 | 9..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:35:39 Download gff for
BO12390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha4-RA | 142..898 | 9..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:35:39 Download gff for
BO12390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16276418..16276519 | 17..118 | 100 | -> | Plus |
X | 16276597..16276826 | 119..348 | 100 | -> | Plus |
X | 16276892..16277309 | 349..767 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:12:25 Download gff for
BO12390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16170451..16170552 | 17..118 | 100 | -> | Plus |
arm_X | 16170630..16170859 | 119..348 | 100 | -> | Plus |
arm_X | 16170925..16171342 | 349..767 | 99 | | Plus |
BO12390.complete Sequence
781 bp assembled on 2006-10-11
GenBank Submission: FJ632428
> BO12390.complete
GAAGTTATCAGTCGACATGTCCTCACGCTACGATCGTGCTGTAACCATAT
TCTCTCCCGACGGTCACCTCCTGCAGGTGGAGTATGCCCAGGAGGCCGTT
CGCAAGGGATCGACTGCGGTCGGAGTTCGCGGCGCCAACTGCGTTGTGCT
TGGCGTGGAGAAGAAGTCGGTGGCCCAACTGCAGGAGGATCGAAAGGTGC
GCAAGATTTGCATGCTCGACAACCACGTTGTAATGGCTTTTGCCGGTCTC
ACGGCCGACGCTCGCATCATGATCAATCGTGCCCAGGTGGAGTGCCAGAG
CCATCGTCTCAATGTCGAGGATCCCGTGACCCTCGAGTACATAACCAGAT
TCATTGCCCAGCTGAAACAAAAATACACGCAGAGCAATGGCCGCCGTCCC
TTCGGTATTTCCTGCCTTATTGGCGGCTTCGATGCCGATGGCTCTGCGCA
TCTGTTCCAGACTGAGCCGTCGGGCATTTTCTACGAGTATAAGGCTAACG
CCACCGGGCGATCGGCAAAGGTTGTGCGCGAGTTCTTCGAGAAGTCCTAC
CGCGAGGAGGAGGTGGCCAACGAGCACGGAGCCGTCAAACTGGCCATCCG
TGCGCTGCTCGAGGTGGCGCAGTCAGGCCAGAACAATCTGGAGGTGGCCA
TCATGGAGAACGGCAAGCCACTGAAAATGCTGGACACCGATGTCATTACC
GATTATGTTAAGATCATCGAGAAGGAGAAGGAGGAGGAGCTCGAGAAGAA
GAAACAGAAAAAGGCAAGCTTTCTAGACCAT
BO12390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha4-RA | 750 | CG3422-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Prosalpha4T1-RA | 750 | CG17268-PA | 1..670 | 17..686 | 1175 | 78.4 | Plus |
Prosalpha4T2-RB | 759 | CG4569-PB | 13..491 | 29..507 | 880 | 78.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha4-RA | 1176 | CG3422-RA | 149..895 | 17..763 | 3735 | 100 | Plus |
Prosalpha4T1-RA | 891 | CG17268-RA | 57..726 | 17..686 | 1175 | 78.4 | Plus |
Prosalpha4T2-RB | 1254 | CG4569-RB | 103..581 | 29..507 | 880 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16276890..16277306 | 347..763 | 2085 | 100 | Plus |
3R | 32079331 | 3R | 20748349..20749018 | 686..17 | 1175 | 78.4 | Minus |
X | 23542271 | X | 16276596..16276826 | 118..348 | 1155 | 100 | Plus |
X | 23542271 | X | 16276418..16276521 | 17..120 | 520 | 100 | Plus |
2R | 25286936 | 2R | 24501794..24501988 | 346..152 | 390 | 80 | Minus |
2R | 25286936 | 2R | 24501453..24501614 | 507..346 | 330 | 80.2 | Minus |
2R | 25286936 | 2R | 24502084..24502175 | 120..29 | 250 | 84.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:06:06 has no hits.
BO12390.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:08 Download gff for
BO12390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros28.1-RA | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:25 Download gff for
BO12390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros28.1-RA | 140..896 | 9..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:09 Download gff for
BO12390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha4-RA | 149..883 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:08 Download gff for
BO12390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros28.1-RA | 140..896 | 9..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:50 Download gff for
BO12390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha4-RA | 149..883 | 17..751 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:50 Download gff for
BO12390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16276418..16276519 | 17..118 | 100 | -> | Plus |
X | 16276597..16276826 | 119..348 | 100 | -> | Plus |
X | 16276892..16277294 | 349..751 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:09 Download gff for
BO12390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16170451..16170552 | 17..118 | 100 | -> | Plus |
arm_X | 16170630..16170859 | 119..348 | 100 | -> | Plus |
arm_X | 16170925..16171327 | 349..751 | 100 | | Plus |
BO12390.pep Sequence
Translation from 16 to 781
> BO12390.pep
MSSRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKK
SVAQLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNV
EDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDADGSAHLFQTE
PSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEV
AQSGQNNLEVAIMENGKPLKMLDTDVITDYVKIIEKEKEEELEKKKQKKA
SFLDH
BO12390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha4-PA | 249 | CG3422-PA | 1..249 | 1..249 | 1257 | 100 | Plus |
Prosalpha4T1-PA | 249 | CG17268-PA | 1..249 | 1..249 | 958 | 75.1 | Plus |
Prosalpha4T2-PB | 252 | CG4569-PB | 1..251 | 1..250 | 813 | 60.6 | Plus |
Prosalpha4T2-PA | 252 | CG4569-PA | 1..251 | 1..250 | 813 | 60.6 | Plus |
Prosalpha2-PA | 234 | CG5266-PA | 3..233 | 2..234 | 368 | 36.4 | Plus |