Clone BO12390 Report

Search the DGRC for BO12390

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptPros28.1-RA
Protein status:BO12390.pep: validated full length
Sequenced Size:781

Clone Sequence Records

BO12390.3prime Sequence

779 bp (778 high quality bases) assembled on 2006-04-20

> BO12390.3prime
ATGGTCTAGAAAGCTTGCCTTTTTCTGTTTCTTCTTCTCGAGCTCCTCCT
CCTTCTCCTTCTCGATGATCTTAACATAATCGGTAATGACATCGGTGTCC
AGCATTTTCAGTGGCTTGCCGTTCTCCATGATGGCCACCTCCAGATTGTT
CTGGCCTGACTGCGCCACCTCGAGCAGCGCACGGATGGCCAGTTTGACGG
CTCCGTGCTCGTTGGCCACCTCCTCCTCGCGGTAGGACTTCTCGAAGAAC
TCGCGCACAACCTTTGCCGATCGCCCGGTGGCGTTAGCCTTATACTCGTA
GAAAATGCCCGACGGCTCAGTCTGGAACAGATGCGCAGAGCCATCGGCAT
CGAAGCCGCCAATAAGGCAGGAAATACCGAAGGGACGGCGGCCATTGCTC
TGCGTGTATTTTTGTTTCAGCTGGGCAATGAATCTGGTTATGTACTCGAG
GGTCACGGGATCCTCGACATTGAGACGATGGCTCTGGCACTCCACCTGGG
CACGATTGATCATGATGCGAGCGTCGGCCGTGAGACCGGCAAAAGCCATT
ACAACGTGGTTGTCGAGCATGCAAATCTTGCGCACCTTTCGATCCTCCTG
CAGTTGGGCCACCGACTTCTTCTCCACGCCAAGCACAACGCAGTTGGCGC
CGCGAACTCCGACCGCAGTCGATCCCTTGCGAACGGCCTCCTGGGCATAC
TCCACCTGCAGGAGGTGACCGTCGGGAGAGAATATGGTTACAGCACGATC
GTAGCGTGAGGACATGTCGACTGATAACT

BO12390.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3422-PA 750 Pros28.1-RA 1..747 765..19 3735 100 Minus
CG4569-PA 759 Pros28.1B-RA 40..83 726..683 170 95.4 Minus
CG4569-PA 759 Pros28.1B-RA 319..374 447..392 155 91 Minus
CG4569-PA 759 Pros28.1B-RA 180..212 586..554 140 96.9 Minus
CG17268-PA 750 Pros28.1A-RA 310..392 456..374 140 86.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha4-RA 1176 CG3422-RA 149..895 765..19 3735 100 Minus
Prosalpha4T1-RA 891 CG17268-RA 57..726 765..96 1175 78.9 Minus
Prosalpha4T2-RB 1254 CG4569-RB 103..581 753..275 880 79.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16276890..16277306 435..19 2085 100 Minus
3R 32079331 3R 20748349..20749018 96..765 1175 78.4 Plus
X 23542271 X 16276596..16276826 664..434 1155 100 Minus
X 23542271 X 16276418..16276521 765..662 520 100 Minus
2R 25286936 2R 24501794..24501988 436..630 390 80 Plus
Blast to na_te.dros performed on 2015-02-12 01:23:30 has no hits.

BO12390.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:35 Download gff for BO12390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3422-PA 1..750 15..765 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:54 Download gff for BO12390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3422-PA 1..750 15..765 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:26:28 Download gff for BO12390.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4-RA 142..898 15..773 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:46 Download gff for BO12390.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4-RA 142..898 15..773 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:46 Download gff for BO12390.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16276418..16276519 664..765 100 -> Minus
X 16276597..16276826 434..663 100 -> Minus
X 16276892..16277309 15..433 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:26:28 Download gff for BO12390.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16170451..16170552 664..765 100 -> Minus
arm_X 16170630..16170859 434..663 100 -> Minus
arm_X 16170925..16171342 15..433 99   Minus

BO12390.5prime Sequence

779 bp (748 high quality bases) assembled on 2006-04-20

> BO12390.5prime
GAAGTTATCAGTCGACATGTCCTCACGCTACGATCGTGCTGTAACCATAT
TCTCTCCCGACGGTCACCTCCTGCAGGTGGAGTATGCCCAGGAGGCCGTT
CGCAAGGGATCGACTGCGGTCGGAGTTCGCGGCGCCAACTGCGTTGTGCT
TGGCGTGGAGAAGAAGTCGGTGGCCCAACTGCAGGAGGATCGAAAGGTGC
GCAAGATTTGCATGCTCGACAACCACGTTGTAATGGCTTTTGCCGGTCTC
ACGGCCGACGCTCGCATCATGATCAATCGTGCCCAGGTGGAGTGCCAGAG
CCATCGTCTCAATGTCGAGGATCCCGTGACCCTCGAGTACATAACCAGAT
TCATTGCCCAGCTGAAACAAAAATACACGCAGAGCAATGGCCGCCGTCCC
TTCGGTATTTCCTGCCTTATTGGCGGCTTCGATGCCGATGGCTCTGCGCA
TCTGTTCCAGACTGAGCCGTCGGGCATTTTCTACGAGTATAAGGCTAACG
CCACCGGGCGATCGGCAAAGGTTGTGCGCGAGTTCTTCGAGAAGTCCTAC
CGCGAGGAGGAGGTGGCCAACGAGCACGGAGCCGTCAAACTGGCCATCCG
TGCGCTGCTCGAGGTGGCGCAGTCAGGCCAGAACAATCTGGAGGTGGCCA
TCATGGAGAACGGCAAGCCACTGAAAATGCTGGACACCGATGTCATTACC
GATTATGTTAAGATCATCGAGAAGGAGAAGGAGGAGGAGCTCGAGAAGAA
GAAACAGAAAAAGGCAAGCTTTCTAGACC

BO12390.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3422-PA 750 Pros28.1-RA 1..747 17..763 3735 100 Plus
CG4569-PA 759 Pros28.1B-RA 40..83 56..99 170 95.4 Plus
CG4569-PA 759 Pros28.1B-RA 319..374 335..390 155 91 Plus
CG4569-PA 759 Pros28.1B-RA 180..212 196..228 140 96.9 Plus
CG17268-PA 750 Pros28.1A-RA 310..392 326..408 140 86.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha4-RA 1176 CG3422-RA 149..895 17..763 3735 100 Plus
Prosalpha4T1-RA 891 CG17268-RA 57..726 17..686 1175 78.9 Plus
Prosalpha4T2-RB 1254 CG4569-RB 103..581 29..507 880 79.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16276890..16277306 347..763 2085 100 Plus
3R 32079331 3R 20748349..20749018 686..17 1175 78.4 Minus
X 23542271 X 16276596..16276826 118..348 1155 100 Plus
X 23542271 X 16276418..16276521 17..120 520 100 Plus
2R 25286936 2R 24501794..24501988 346..152 390 80 Minus
Blast to na_te.dros performed on 2015-02-13 02:31:17 has no hits.

BO12390.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:36 Download gff for BO12390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3422-PA 1..750 17..767 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:55 Download gff for BO12390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3422-PA 1..750 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:12:25 Download gff for BO12390.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4-RA 142..898 9..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:35:39 Download gff for BO12390.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4-RA 142..898 9..767 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:35:39 Download gff for BO12390.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16276418..16276519 17..118 100 -> Plus
X 16276597..16276826 119..348 100 -> Plus
X 16276892..16277309 349..767 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:12:25 Download gff for BO12390.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16170451..16170552 17..118 100 -> Plus
arm_X 16170630..16170859 119..348 100 -> Plus
arm_X 16170925..16171342 349..767 99   Plus

BO12390.complete Sequence

781 bp assembled on 2006-10-11

GenBank Submission: FJ632428

> BO12390.complete
GAAGTTATCAGTCGACATGTCCTCACGCTACGATCGTGCTGTAACCATAT
TCTCTCCCGACGGTCACCTCCTGCAGGTGGAGTATGCCCAGGAGGCCGTT
CGCAAGGGATCGACTGCGGTCGGAGTTCGCGGCGCCAACTGCGTTGTGCT
TGGCGTGGAGAAGAAGTCGGTGGCCCAACTGCAGGAGGATCGAAAGGTGC
GCAAGATTTGCATGCTCGACAACCACGTTGTAATGGCTTTTGCCGGTCTC
ACGGCCGACGCTCGCATCATGATCAATCGTGCCCAGGTGGAGTGCCAGAG
CCATCGTCTCAATGTCGAGGATCCCGTGACCCTCGAGTACATAACCAGAT
TCATTGCCCAGCTGAAACAAAAATACACGCAGAGCAATGGCCGCCGTCCC
TTCGGTATTTCCTGCCTTATTGGCGGCTTCGATGCCGATGGCTCTGCGCA
TCTGTTCCAGACTGAGCCGTCGGGCATTTTCTACGAGTATAAGGCTAACG
CCACCGGGCGATCGGCAAAGGTTGTGCGCGAGTTCTTCGAGAAGTCCTAC
CGCGAGGAGGAGGTGGCCAACGAGCACGGAGCCGTCAAACTGGCCATCCG
TGCGCTGCTCGAGGTGGCGCAGTCAGGCCAGAACAATCTGGAGGTGGCCA
TCATGGAGAACGGCAAGCCACTGAAAATGCTGGACACCGATGTCATTACC
GATTATGTTAAGATCATCGAGAAGGAGAAGGAGGAGGAGCTCGAGAAGAA
GAAACAGAAAAAGGCAAGCTTTCTAGACCAT

BO12390.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha4-RA 750 CG3422-PA 1..747 17..763 3735 100 Plus
Prosalpha4T1-RA 750 CG17268-PA 1..670 17..686 1175 78.4 Plus
Prosalpha4T2-RB 759 CG4569-PB 13..491 29..507 880 78.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha4-RA 1176 CG3422-RA 149..895 17..763 3735 100 Plus
Prosalpha4T1-RA 891 CG17268-RA 57..726 17..686 1175 78.4 Plus
Prosalpha4T2-RB 1254 CG4569-RB 103..581 29..507 880 78.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16276890..16277306 347..763 2085 100 Plus
3R 32079331 3R 20748349..20749018 686..17 1175 78.4 Minus
X 23542271 X 16276596..16276826 118..348 1155 100 Plus
X 23542271 X 16276418..16276521 17..120 520 100 Plus
2R 25286936 2R 24501794..24501988 346..152 390 80 Minus
2R 25286936 2R 24501453..24501614 507..346 330 80.2 Minus
2R 25286936 2R 24502084..24502175 120..29 250 84.8 Minus
Blast to na_te.dros performed on 2014-11-27 20:06:06 has no hits.

BO12390.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:08 Download gff for BO12390.complete
Subject Subject Range Query Range Percent Splice Strand
Pros28.1-RA 1..750 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:25 Download gff for BO12390.complete
Subject Subject Range Query Range Percent Splice Strand
Pros28.1-RA 140..896 9..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:09 Download gff for BO12390.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4-RA 149..883 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:08 Download gff for BO12390.complete
Subject Subject Range Query Range Percent Splice Strand
Pros28.1-RA 140..896 9..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:50 Download gff for BO12390.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4-RA 149..883 17..751 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:50 Download gff for BO12390.complete
Subject Subject Range Query Range Percent Splice Strand
X 16276418..16276519 17..118 100 -> Plus
X 16276597..16276826 119..348 100 -> Plus
X 16276892..16277294 349..751 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:09 Download gff for BO12390.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16170451..16170552 17..118 100 -> Plus
arm_X 16170630..16170859 119..348 100 -> Plus
arm_X 16170925..16171327 349..751 100   Plus

BO12390.pep Sequence

Translation from 16 to 781

> BO12390.pep
MSSRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKK
SVAQLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNV
EDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDADGSAHLFQTE
PSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEV
AQSGQNNLEVAIMENGKPLKMLDTDVITDYVKIIEKEKEEELEKKKQKKA
SFLDH

BO12390.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha4-PA 249 CG3422-PA 1..249 1..249 1257 100 Plus
Prosalpha4T1-PA 249 CG17268-PA 1..249 1..249 958 75.1 Plus
Prosalpha4T2-PB 252 CG4569-PB 1..251 1..250 813 60.6 Plus
Prosalpha4T2-PA 252 CG4569-PA 1..251 1..250 813 60.6 Plus
Prosalpha2-PA 234 CG5266-PA 3..233 2..234 368 36.4 Plus