Clone Sequence Records
BO12394.3prime Sequence
497 bp (496 high quality bases) assembled on 2006-04-20
> BO12394.3prime
ATGGTCTAGAAAGCTTGCAACGGCGAACGGCTGATCCTTGCCATCCTCGT
GGTACTTGATGTATGTTTCCCCGTGGGTGAAGTCCTTGGTTCCCTCCAGG
CGACCGCGGGGCGGTGCCTTCTCGTAGTCGAAGGCCTTCTCTGACTTGCC
GAACAGCTGGTTGGCCATCTCGATGTCCTCGCGGTAATTGCCCACGACCA
CCTTCTTGCCAGTGAGCGGGTCCGTTATGTCACCCAGCGGATAGACCACT
TTTTCCACGTTGTGCGTGATGAGGCGGGTGAGGCGCTCTGGCAGTTCCCG
TATCAGGACCACGTCCCCGGTCTTGCACACCTTCTGCGGATCGTGGGCGA
AGTAGAACTCGTCCTTCTTAAAGTACATATTCAGGTTCTTGTCCAGCTCC
ATTCGGCGAATGCGGATCTTGGAGGCGTTCTGCTTGATGCAGGGCATGCA
CTGGCCCATTAGTAGGAGTCCTCGCCTCGACATGTCGACTGATAACT
BO12394.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4326-PA | 468 | mRpS17-RA | 1..465 | 483..19 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS17-RA | 713 | CG4326-RA | 75..539 | 483..19 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24173839..24174196 | 19..376 | 1790 | 100 | Plus |
| 2R | 25286936 | 2R | 24174260..24174367 | 376..483 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:42:59 has no hits.
BO12394.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:43 Download gff for
BO12394.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4326-PA | 1..468 | 18..483 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:05 Download gff for
BO12394.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4326-PA | 1..468 | 18..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:08:08 Download gff for
BO12394.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 67..546 | 12..495 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:30 Download gff for
BO12394.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 67..546 | 12..495 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:30 Download gff for
BO12394.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24173832..24174195 | 12..375 | 99 | <- | Plus |
| 2R | 24174260..24174375 | 376..495 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:08:08 Download gff for
BO12394.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20061355..20061718 | 12..375 | 99 | <- | Plus |
| arm_2R | 20061783..20061898 | 376..495 | 95 | | Plus |
BO12394.5prime Sequence
497 bp (496 high quality bases) assembled on 2006-04-20
> BO12394.5prime
GAAGTTATCAGTCGACATGTCGAGGCGAGGACTCCTACTAATGGGCCAGT
GCATGCCCTGCATCAAGCAGAACGCCTCCAAGATCCGCATTCGCCGAATG
GAGCTGGACAAGAACCTGAATATGTACTTTAAGAAGGACGAGTTCTACTT
CGCCCACGATCCGCAGAAGGTGTGCAAGACCGGGGACGTGGTCCTGATAC
GGGAACTGCCAGAGCGCCTCACCCGCCTCATCACGCACAACGTGGAAAAA
GTGGTCTATCCGCTGGGTGACATAACGGACCCGCTCACTGGCAAGAAGGT
GGTCGTGGGCAATTACCGCGAGGACATCGAGATGGCCAACCAGCTGTTCG
GCAAGTCAGAGAAGGCCTTCGACTACGAGAAGGCACCGCCCCGCGGTCGC
CTGGAGGGAACCAAGGACTTCACCCACGGGGAAACATACATCAAGTACCA
CGAGGATGGCAAGGATCAGCCGTTCGCCGTTGCAAGCTTTCTAGACC
BO12394.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4326-PA | 468 | mRpS17-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS17-RA | 713 | CG4326-RA | 75..539 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24173839..24174196 | 481..124 | 1790 | 100 | Minus |
| 2R | 25286936 | 2R | 24174260..24174367 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:27:39 has no hits.
BO12394.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:44 Download gff for
BO12394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4326-PA | 1..468 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:06 Download gff for
BO12394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4326-PA | 1..468 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:46 Download gff for
BO12394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 67..546 | 5..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:22 Download gff for
BO12394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 67..546 | 5..488 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:22 Download gff for
BO12394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24173832..24174195 | 125..488 | 99 | <- | Minus |
| 2R | 24174260..24174375 | 5..124 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:46 Download gff for
BO12394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20061355..20061718 | 125..488 | 99 | <- | Minus |
| arm_2R | 20061783..20061898 | 5..124 | 95 | | Minus |
BO12394.complete Sequence
499 bp assembled on 2006-10-11
GenBank Submission: FJ632430
> BO12394.complete
GAAGTTATCAGTCGACATGTCGAGGCGAGGACTCCTACTAATGGGCCAGT
GCATGCCCTGCATCAAGCAGAACGCCTCCAAGATCCGCATTCGCCGAATG
GAGCTGGACAAGAACCTGAATATGTACTTTAAGAAGGACGAGTTCTACTT
CGCCCACGATCCGCAGAAGGTGTGCAAGACCGGGGACGTGGTCCTGATAC
GGGAACTGCCAGAGCGCCTCACCCGCCTCATCACGCACAACGTGGAAAAA
GTGGTCTATCCGCTGGGTGACATAACGGACCCGCTCACTGGCAAGAAGGT
GGTCGTGGGCAATTACCGCGAGGACATCGAGATGGCCAACCAGCTGTTCG
GCAAGTCAGAGAAGGCCTTCGACTACGAGAAGGCACCGCCCCGCGGTCGC
CTGGAGGGAACCAAGGACTTCACCCACGGGGAAACATACATCAAGTACCA
CGAGGATGGCAAGGATCAGCCGTTCGCCGTTGCAAGCTTTCTAGACCAT
BO12394.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS17-RA | 468 | CG4326-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS17-RA | 713 | CG4326-RA | 75..539 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24173839..24174196 | 481..124 | 1790 | 100 | Minus |
| 2R | 25286936 | 2R | 24174260..24174367 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:59:58 has no hits.
BO12394.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:10 Download gff for
BO12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 1..468 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:28 Download gff for
BO12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 61..540 | 5..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:13 Download gff for
BO12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 75..539 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:10 Download gff for
BO12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 63..542 | 5..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:41 Download gff for
BO12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS17-RA | 75..539 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:41 Download gff for
BO12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24173837..24174195 | 125..483 | 99 | <- | Minus |
| 2R | 24174260..24174367 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:13 Download gff for
BO12394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20061360..20061718 | 125..483 | 99 | <- | Minus |
| arm_2R | 20061783..20061890 | 17..124 | 100 | | Minus |
BO12394.pep Sequence
Translation from 16 to 499
> BO12394.pep
MSRRGLLLMGQCMPCIKQNASKIRIRRMELDKNLNMYFKKDEFYFAHDPQ
KVCKTGDVVLIRELPERLTRLITHNVEKVVYPLGDITDPLTGKKVVVGNY
REDIEMANQLFGKSEKAFDYEKAPPRGRLEGTKDFTHGETYIKYHEDGKD
QPFAVASFLDH
BO12394.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS17-PA | 155 | CG4326-PA | 1..155 | 1..155 | 824 | 100 | Plus |
