Clone Sequence Records
BO12395.3prime Sequence
858 bp (792 high quality bases) assembled on 2006-04-20
> BO12395.3prime
ATGGTCTAGAAAGCTTGCTGAACTGGTCTCCTTCTTTTCATCGCCCAATC
CCAATCCGCTGATCAGGCCGCCGATGAAGCTATCTACAATCGGATTGCCA
CTGCCAGCAGGGGCGCCAGGAGCAGGAGCAGGGGCGGGTAATCCTGGGGC
AACTGGAACAGCGTTGACGGTGCCACAATCGTACATACGATTCAGCTTCT
GGATATCGTAGTCGGAGAAACCATTCCTCTGGCCCATTTTATCGGCGCCA
TTGGCTTGCATGGCCAGTATGGTGGGCTGTCCGTTGATGGAGAAGGCGTT
CTTGGAGTAGTGCATCACGCTGCCATAGTCGTAGGGCACCCCAAAGGCTT
CCGTGCGGGCGGCCTTTTCGAAGTTGTTCATCGCCGAGGACTGGACATTG
TTGTACTGGATGGCCACATAACCATCGCGCTCCATACGGTTCTGTTCATG
AAGGAAGCCGAGGGCGTGCATCAGCTCGTGCATGGCGGTTCCTGGACGGC
TGAGACAGCCGGGAGACTGTAGGTTCACCTCCTGCTTGCCACCCACTCGA
CCAACGGAGGACCAACAGCCGGAGTTGTCGCCGCGAATGGAGATGTAGTC
CCGCTCAGAGCTGCGCTTCACAAACCGAATGCACGTCCGACGATGGTACT
CACCAATGGCATTTTCAATTGTGGCCATATCTCTGGCATTGAAGTTTCCT
CGGATTTCATATGGCACCACACCATTTGGCCAACGGGAGGACTGAGTGGG
CAGTCCATTTTTCATAATCAGATCCGTTTGCGGCACCAGCATATCACCCT
CCAGATAGCTGCCCAGTTCCTCAGGATTCATCTCCTCTGCATCCGCACTA
AAGTTACC
BO12395.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6763-PA | 1065 | CG6763-RA | 223..1062 | 858..19 | 4175 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6763-RB | 1275 | CG6763-RB | 296..1135 | 858..19 | 4185 | 99.9 | Minus |
CG6763-RA | 1974 | CG6763-RA | 995..1834 | 858..19 | 4185 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23284996..23285595 | 858..259 | 2985 | 99.8 | Minus |
3R | 32079331 | 3R | 23285661..23285901 | 259..19 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 05:05:54 has no hits.
BO12395.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:45 Download gff for
BO12395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-PA | 223..1065 | 18..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:08 Download gff for
BO12395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-PA | 223..1065 | 18..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:12:05 Download gff for
BO12395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-RA | 995..1834 | 19..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:52:26 Download gff for
BO12395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-RA | 995..1834 | 19..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:52:26 Download gff for
BO12395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23284996..23285595 | 259..858 | 99 | -> | Minus |
3R | 23285662..23285901 | 19..258 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:12:05 Download gff for
BO12395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19110718..19111317 | 259..858 | 99 | -> | Minus |
arm_3R | 19111384..19111623 | 19..258 | 100 | | Minus |
BO12395.5prime Sequence
871 bp (729 high quality bases) assembled on 2006-04-20
> BO12395.5prime
GAAGTTATCAGTCGACATGAGCCTGAAAGTTTTTCTAGTCCTAGCTTTGG
CTCTATCGTCCTGCCAAGCGCTTCCCTATGTATCCTATGATGATGTTGAC
GATACGGAGGTCATCGAGCTGCCTGGAAATGGAATCGAGGAGATACCACC
CACTCTTGGCAAGGATATCATCGACCTGACACCATTGGGAACGGCGCTCT
TTGGCAAACCGGATGAGGAGCTAACGGCGAATCGTGTGGGTAACTTTAGT
GCGGATGCAGATGAGATGAATCCTGAGGAACTGGGCAGCTATCTGGAGGG
TGATATGCTGGTGCCGCAAACGGATCTGATTATGAAAAATGGACTGCCCA
CTCAGTCCTCCCGTTGGCCAAATGGTGTGGTGCCATATGAAATCCGAGGA
AACTTCAATGCCAGAGATATGGCCACAATTGAAAATGCCATTGGTGAGTA
CCATCGTCGGACGTGCATTCGGTTTGTGAAGCGCAGCTCTGAGCGGGACT
ACATCTCCATTCGCGGCGACAACTCCGGCTGTTGGTCCTCCGTTGGTCGA
GTGGGTGGCAAGCAGGAGGTGAACCTACAGTCTCCCGGCTGTCTCAGCCG
TCCAGGAACCGCCATGCACGAGCTGATGCACGCCCTCGGCTTCCTTCATG
AACAGAACCGTATGGAGCGCGATGGTTATGTGGCCATCCAGTACAACAAT
GTCCAGTCCTCGGCGATGAACAACTTCGAAAAGGCCGCCCGCACGGAAGC
CTTTGGGGTGCCCTACGACTATGGCAGCGTGATGCACTACTCCAAGAACG
CCTTCTCCATCAACGGACAGCCCACCATACTGGCCATGCAAGCCAATGGC
GCCGATAAAATGGGCCAGAGG
BO12395.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6763-PA | 1065 | CG6763-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6763-RB | 1275 | CG6763-RB | 74..928 | 17..871 | 4275 | 100 | Plus |
CG6763-RA | 1974 | CG6763-RA | 773..1627 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23284774..23285595 | 17..838 | 4110 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:18:12 has no hits.
BO12395.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:47 Download gff for
BO12395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:09 Download gff for
BO12395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:17:53 Download gff for
BO12395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-RA | 773..1627 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:48:07 Download gff for
BO12395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-RA | 773..1627 | 17..871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:48:07 Download gff for
BO12395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23284774..23285595 | 17..838 | 100 | -> | Plus |
3R | 23285662..23285694 | 839..871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:17:53 Download gff for
BO12395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19110496..19111317 | 17..838 | 100 | -> | Plus |
arm_3R | 19111384..19111416 | 839..871 | 100 | | Plus |
BO12395.complete Sequence
1096 bp assembled on 2006-10-11
GenBank Submission: FJ632431
> BO12395.complete
GAAGTTATCAGTCGACATGAGCCTGAAAGTTTTTCTAGTCCTAGCTTTGG
CTCTATCGTCCTGCCAAGCGCTTCCCTATGTATCCTATGATGATGTTGAC
GATACGGAGGTCATCGAGCTGCCTGGAAATGGAATCGAGGAGATACCACC
CACTCTTGGCAAGGATATCATCGACCTGACACCATTGGGAACGGCGCTCT
TTGGCAAACCGGATGAGGAGCTAACGGCGAATCGTGTGGGTAACTTTAGT
GCGGATGCAGATGAGATGAATCCTGAGGAACTGGGCAGCTATCTGGAGGG
TGATATGCTGGTGCCGCAAACGGATCTGATTATGAAAAATGGACTGCCCA
CTCAGTCCTCCCGTTGGCCAAATGGTGTGGTGCCATATGAAATCCGAGGA
AACTTCAATGCCAGAGATATGGCCACAATTGAAAATGCCATTGGTGAGTA
CCATCGTCGGACGTGCATTCGGTTTGTGAAGCGCAGCTCTGAGCGGGACT
ACATCTCCATTCGCGGCGACAACTCCGGCTGTTGGTCCTCCGTTGGTCGA
GTGGGTGGCAAGCAGGAGGTGAACCTACAGTCTCCCGGCTGTCTCAGCCG
TCCAGGAACCGCCATGCACGAGCTGATGCACGCCCTCGGCTTCCTTCATG
AACAGAACCGTATGGAGCGCGATGGTTATGTGGCCATCCAGTACAACAAT
GTCCAGTCCTCGGCGATGAACAACTTCGAAAAGGCCGCCCGCACGGAAGC
CTTTGGGGTGCCCTACGACTATGGCAGCGTGATGCACTACTCCAAGAACG
CCTTCTCCATCAACGGACAGCCCACCATACTGGCCATGCAAGCCAATGGC
GCCGATAAAATGGGCCAGAGGAATGGTTTCTCCGACTACGATATCCAGAA
GCTGAATCGTATGTACGATTGTGGCACCGTCAACGCTGTTCCAGTTGCCC
CAGGATTACCCGCCCCTGCTCCTGCTCCTGGCGCCCCTGCTGGCAGTGGC
AATCCGATTGTAGATAGCTTCATCGGCGGCCTGATCAGCGGATTGGGATT
GGGCGATGAAAAGAAGGAGACCAGTTCAGCAAGCTTTCTAGACCAT
BO12395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6763-RB | 1065 | CG6763-PB | 1..1062 | 17..1078 | 5310 | 100 | Plus |
CG6763-RA | 1065 | CG6763-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6763-RB | 1275 | CG6763-RB | 74..1135 | 17..1078 | 5310 | 100 | Plus |
CG6763-RA | 1974 | CG6763-RA | 773..1834 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23284774..23285595 | 17..838 | 4110 | 100 | Plus |
3R | 32079331 | 3R | 23285661..23285901 | 838..1078 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:04:39 has no hits.
BO12395.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:11 Download gff for
BO12395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-RA | 1..1065 | 17..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:31 Download gff for
BO12395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-RA | 773..1834 | 17..1078 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:13 Download gff for
BO12395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-RA | 773..1834 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:11 Download gff for
BO12395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-RA | 773..1834 | 17..1078 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:11 Download gff for
BO12395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6763-RA | 773..1834 | 17..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:11 Download gff for
BO12395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23284774..23285595 | 17..838 | 100 | -> | Plus |
3R | 23285662..23285901 | 839..1080 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:13 Download gff for
BO12395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19110496..19111317 | 17..838 | 100 | -> | Plus |
arm_3R | 19111384..19111623 | 839..1080 | 99 | | Plus |
BO12395.pep Sequence
Translation from 16 to 1096
> BO12395.pep
MSLKVFLVLALALSSCQALPYVSYDDVDDTEVIELPGNGIEEIPPTLGKD
IIDLTPLGTALFGKPDEELTANRVGNFSADADEMNPEELGSYLEGDMLVP
QTDLIMKNGLPTQSSRWPNGVVPYEIRGNFNARDMATIENAIGEYHRRTC
IRFVKRSSERDYISIRGDNSGCWSSVGRVGGKQEVNLQSPGCLSRPGTAM
HELMHALGFLHEQNRMERDGYVAIQYNNVQSSAMNNFEKAARTEAFGVPY
DYGSVMHYSKNAFSINGQPTILAMQANGADKMGQRNGFSDYDIQKLNRMY
DCGTVNAVPVAPGLPAPAPAPGAPAGSGNPIVDSFIGGLISGLGLGDEKK
ETSSASFLDH
BO12395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6763-PB | 354 | CG6763-PB | 1..354 | 1..354 | 1859 | 100 | Plus |
CG6763-PA | 354 | CG6763-PA | 1..354 | 1..354 | 1859 | 100 | Plus |
CG5715-PA | 295 | CG5715-PA | 33..293 | 49..302 | 722 | 54.2 | Plus |
CG6696-PA | 324 | CG6696-PA | 66..290 | 76..301 | 459 | 43.9 | Plus |
CG7631-PA | 254 | CG7631-PA | 23..250 | 77..302 | 408 | 40.3 | Plus |