Clone BO12395 Report

Search the DGRC for BO12395

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG6763-RA
Protein status:BO12395.pep: validated full length
Sequenced Size:1096

Clone Sequence Records

BO12395.3prime Sequence

858 bp (792 high quality bases) assembled on 2006-04-20

> BO12395.3prime
ATGGTCTAGAAAGCTTGCTGAACTGGTCTCCTTCTTTTCATCGCCCAATC
CCAATCCGCTGATCAGGCCGCCGATGAAGCTATCTACAATCGGATTGCCA
CTGCCAGCAGGGGCGCCAGGAGCAGGAGCAGGGGCGGGTAATCCTGGGGC
AACTGGAACAGCGTTGACGGTGCCACAATCGTACATACGATTCAGCTTCT
GGATATCGTAGTCGGAGAAACCATTCCTCTGGCCCATTTTATCGGCGCCA
TTGGCTTGCATGGCCAGTATGGTGGGCTGTCCGTTGATGGAGAAGGCGTT
CTTGGAGTAGTGCATCACGCTGCCATAGTCGTAGGGCACCCCAAAGGCTT
CCGTGCGGGCGGCCTTTTCGAAGTTGTTCATCGCCGAGGACTGGACATTG
TTGTACTGGATGGCCACATAACCATCGCGCTCCATACGGTTCTGTTCATG
AAGGAAGCCGAGGGCGTGCATCAGCTCGTGCATGGCGGTTCCTGGACGGC
TGAGACAGCCGGGAGACTGTAGGTTCACCTCCTGCTTGCCACCCACTCGA
CCAACGGAGGACCAACAGCCGGAGTTGTCGCCGCGAATGGAGATGTAGTC
CCGCTCAGAGCTGCGCTTCACAAACCGAATGCACGTCCGACGATGGTACT
CACCAATGGCATTTTCAATTGTGGCCATATCTCTGGCATTGAAGTTTCCT
CGGATTTCATATGGCACCACACCATTTGGCCAACGGGAGGACTGAGTGGG
CAGTCCATTTTTCATAATCAGATCCGTTTGCGGCACCAGCATATCACCCT
CCAGATAGCTGCCCAGTTCCTCAGGATTCATCTCCTCTGCATCCGCACTA
AAGTTACC

BO12395.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6763-PA 1065 CG6763-RA 223..1062 858..19 4175 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6763-RB 1275 CG6763-RB 296..1135 858..19 4185 99.9 Minus
CG6763-RA 1974 CG6763-RA 995..1834 858..19 4185 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23284996..23285595 858..259 2985 99.8 Minus
3R 32079331 3R 23285661..23285901 259..19 1205 100 Minus
Blast to na_te.dros performed on 2015-02-01 05:05:54 has no hits.

BO12395.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:45 Download gff for BO12395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6763-PA 223..1065 18..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:08 Download gff for BO12395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6763-PA 223..1065 18..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:12:05 Download gff for BO12395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 995..1834 19..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:52:26 Download gff for BO12395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 995..1834 19..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:52:26 Download gff for BO12395.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23284996..23285595 259..858 99 -> Minus
3R 23285662..23285901 19..258 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:12:05 Download gff for BO12395.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19110718..19111317 259..858 99 -> Minus
arm_3R 19111384..19111623 19..258 100   Minus

BO12395.5prime Sequence

871 bp (729 high quality bases) assembled on 2006-04-20

> BO12395.5prime
GAAGTTATCAGTCGACATGAGCCTGAAAGTTTTTCTAGTCCTAGCTTTGG
CTCTATCGTCCTGCCAAGCGCTTCCCTATGTATCCTATGATGATGTTGAC
GATACGGAGGTCATCGAGCTGCCTGGAAATGGAATCGAGGAGATACCACC
CACTCTTGGCAAGGATATCATCGACCTGACACCATTGGGAACGGCGCTCT
TTGGCAAACCGGATGAGGAGCTAACGGCGAATCGTGTGGGTAACTTTAGT
GCGGATGCAGATGAGATGAATCCTGAGGAACTGGGCAGCTATCTGGAGGG
TGATATGCTGGTGCCGCAAACGGATCTGATTATGAAAAATGGACTGCCCA
CTCAGTCCTCCCGTTGGCCAAATGGTGTGGTGCCATATGAAATCCGAGGA
AACTTCAATGCCAGAGATATGGCCACAATTGAAAATGCCATTGGTGAGTA
CCATCGTCGGACGTGCATTCGGTTTGTGAAGCGCAGCTCTGAGCGGGACT
ACATCTCCATTCGCGGCGACAACTCCGGCTGTTGGTCCTCCGTTGGTCGA
GTGGGTGGCAAGCAGGAGGTGAACCTACAGTCTCCCGGCTGTCTCAGCCG
TCCAGGAACCGCCATGCACGAGCTGATGCACGCCCTCGGCTTCCTTCATG
AACAGAACCGTATGGAGCGCGATGGTTATGTGGCCATCCAGTACAACAAT
GTCCAGTCCTCGGCGATGAACAACTTCGAAAAGGCCGCCCGCACGGAAGC
CTTTGGGGTGCCCTACGACTATGGCAGCGTGATGCACTACTCCAAGAACG
CCTTCTCCATCAACGGACAGCCCACCATACTGGCCATGCAAGCCAATGGC
GCCGATAAAATGGGCCAGAGG

BO12395.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6763-PA 1065 CG6763-RA 1..855 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6763-RB 1275 CG6763-RB 74..928 17..871 4275 100 Plus
CG6763-RA 1974 CG6763-RA 773..1627 17..871 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23284774..23285595 17..838 4110 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:18:12 has no hits.

BO12395.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:47 Download gff for BO12395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6763-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:09 Download gff for BO12395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6763-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:17:53 Download gff for BO12395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 773..1627 17..871 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:48:07 Download gff for BO12395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 773..1627 17..871 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:48:07 Download gff for BO12395.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23284774..23285595 17..838 100 -> Plus
3R 23285662..23285694 839..871 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:17:53 Download gff for BO12395.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19110496..19111317 17..838 100 -> Plus
arm_3R 19111384..19111416 839..871 100   Plus

BO12395.complete Sequence

1096 bp assembled on 2006-10-11

GenBank Submission: FJ632431

> BO12395.complete
GAAGTTATCAGTCGACATGAGCCTGAAAGTTTTTCTAGTCCTAGCTTTGG
CTCTATCGTCCTGCCAAGCGCTTCCCTATGTATCCTATGATGATGTTGAC
GATACGGAGGTCATCGAGCTGCCTGGAAATGGAATCGAGGAGATACCACC
CACTCTTGGCAAGGATATCATCGACCTGACACCATTGGGAACGGCGCTCT
TTGGCAAACCGGATGAGGAGCTAACGGCGAATCGTGTGGGTAACTTTAGT
GCGGATGCAGATGAGATGAATCCTGAGGAACTGGGCAGCTATCTGGAGGG
TGATATGCTGGTGCCGCAAACGGATCTGATTATGAAAAATGGACTGCCCA
CTCAGTCCTCCCGTTGGCCAAATGGTGTGGTGCCATATGAAATCCGAGGA
AACTTCAATGCCAGAGATATGGCCACAATTGAAAATGCCATTGGTGAGTA
CCATCGTCGGACGTGCATTCGGTTTGTGAAGCGCAGCTCTGAGCGGGACT
ACATCTCCATTCGCGGCGACAACTCCGGCTGTTGGTCCTCCGTTGGTCGA
GTGGGTGGCAAGCAGGAGGTGAACCTACAGTCTCCCGGCTGTCTCAGCCG
TCCAGGAACCGCCATGCACGAGCTGATGCACGCCCTCGGCTTCCTTCATG
AACAGAACCGTATGGAGCGCGATGGTTATGTGGCCATCCAGTACAACAAT
GTCCAGTCCTCGGCGATGAACAACTTCGAAAAGGCCGCCCGCACGGAAGC
CTTTGGGGTGCCCTACGACTATGGCAGCGTGATGCACTACTCCAAGAACG
CCTTCTCCATCAACGGACAGCCCACCATACTGGCCATGCAAGCCAATGGC
GCCGATAAAATGGGCCAGAGGAATGGTTTCTCCGACTACGATATCCAGAA
GCTGAATCGTATGTACGATTGTGGCACCGTCAACGCTGTTCCAGTTGCCC
CAGGATTACCCGCCCCTGCTCCTGCTCCTGGCGCCCCTGCTGGCAGTGGC
AATCCGATTGTAGATAGCTTCATCGGCGGCCTGATCAGCGGATTGGGATT
GGGCGATGAAAAGAAGGAGACCAGTTCAGCAAGCTTTCTAGACCAT

BO12395.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6763-RB 1065 CG6763-PB 1..1062 17..1078 5310 100 Plus
CG6763-RA 1065 CG6763-PA 1..1062 17..1078 5310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6763-RB 1275 CG6763-RB 74..1135 17..1078 5310 100 Plus
CG6763-RA 1974 CG6763-RA 773..1834 17..1078 5310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23284774..23285595 17..838 4110 100 Plus
3R 32079331 3R 23285661..23285901 838..1078 1205 100 Plus
Blast to na_te.dros performed on 2014-11-27 21:04:39 has no hits.

BO12395.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:11 Download gff for BO12395.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 1..1065 17..1079 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:31 Download gff for BO12395.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 773..1834 17..1078 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:13 Download gff for BO12395.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 773..1834 17..1080 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:11 Download gff for BO12395.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 773..1834 17..1078 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:11 Download gff for BO12395.complete
Subject Subject Range Query Range Percent Splice Strand
CG6763-RA 773..1834 17..1080 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:11 Download gff for BO12395.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23284774..23285595 17..838 100 -> Plus
3R 23285662..23285901 839..1080 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:13 Download gff for BO12395.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19110496..19111317 17..838 100 -> Plus
arm_3R 19111384..19111623 839..1080 99   Plus

BO12395.pep Sequence

Translation from 16 to 1096

> BO12395.pep
MSLKVFLVLALALSSCQALPYVSYDDVDDTEVIELPGNGIEEIPPTLGKD
IIDLTPLGTALFGKPDEELTANRVGNFSADADEMNPEELGSYLEGDMLVP
QTDLIMKNGLPTQSSRWPNGVVPYEIRGNFNARDMATIENAIGEYHRRTC
IRFVKRSSERDYISIRGDNSGCWSSVGRVGGKQEVNLQSPGCLSRPGTAM
HELMHALGFLHEQNRMERDGYVAIQYNNVQSSAMNNFEKAARTEAFGVPY
DYGSVMHYSKNAFSINGQPTILAMQANGADKMGQRNGFSDYDIQKLNRMY
DCGTVNAVPVAPGLPAPAPAPGAPAGSGNPIVDSFIGGLISGLGLGDEKK
ETSSASFLDH

BO12395.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6763-PB 354 CG6763-PB 1..354 1..354 1859 100 Plus
CG6763-PA 354 CG6763-PA 1..354 1..354 1859 100 Plus
CG5715-PA 295 CG5715-PA 33..293 49..302 722 54.2 Plus
CG6696-PA 324 CG6696-PA 66..290 76..301 459 43.9 Plus
CG7631-PA 254 CG7631-PA 23..250 77..302 408 40.3 Plus