Clone BO12396 Report

Search the DGRC for BO12396

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:123
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptHmgZ-RA
Protein status:BO12396.pep: validated full length
Sequenced Size:367

Clone Sequence Records

BO12396.3prime Sequence

365 bp (364 high quality bases) assembled on 2006-04-20

> BO12396.3prime
ATGGTCTAGAAAGCTTGCCTCGCTCTCGTCCTCCTCCTCCTCCTCGGAGG
ACTCTTTCTTCTTGGCCTTCTTGGCTGGCTTGGCGGCCGCCTTCTTTCGC
TTCTTGGGCGCTCCCGAATCGGTGCCGCCATTGGCCTCGTACTCCTTTAC
CGCCTTGTTGTACTCCTCCTTCATTTTGATGGCCTTCTGCTCCCACTCGG
TCTTATCCTTCAGTCCGCGCCAGAGTTCTCCGCCCCGCTTGGCGATGTCT
GTCACCTTGCTGCCGGGATTATCCTTCTTGATCTGTTCGCGGGTCTCGTT
GAGCCACAGCATGTAGGCGGAAAGGGGACGCTTCGGGCGATCTCCACTCA
TGTCGACTGATAACT

BO12396.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17921-PB 336 HmgZ-RB 1..333 351..19 1665 100 Minus
CG17921-PA 336 HmgZ-RA 1..333 351..19 1665 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
HmgZ-RD 765 CG17921-RD 298..630 351..19 1665 100 Minus
HmgZ-RC 1188 CG17921-RC 219..551 351..19 1665 100 Minus
HmgZ-RA 1184 CG17921-RA 215..547 351..19 1665 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21698125..21698304 19..198 900 100 Plus
2R 25286936 2R 21698387..21698540 198..351 770 100 Plus
2R 25286936 2R 21715495..21715614 321..202 195 77.5 Minus
Blast to na_te.dros performed on 2015-02-11 17:04:03 has no hits.

BO12396.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:48 Download gff for BO12396.3prime
Subject Subject Range Query Range Percent Splice Strand
HmgZ-PB 1..336 18..351 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:10 Download gff for BO12396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17921-PA 1..336 18..351 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:46:00 Download gff for BO12396.3prime
Subject Subject Range Query Range Percent Splice Strand
HmgZ-RB 233..572 19..359 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:41 Download gff for BO12396.3prime
Subject Subject Range Query Range Percent Splice Strand
HmgZ-RA 208..547 19..359 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:41 Download gff for BO12396.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21698125..21698304 19..198 100 <- Plus
2R 21698388..21698547 199..359 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:46:00 Download gff for BO12396.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17585630..17585809 19..198 100 <- Plus
arm_2R 17585893..17586052 199..359 97   Plus

BO12396.5prime Sequence

365 bp (364 high quality bases) assembled on 2006-04-20

> BO12396.5prime
GAAGTTATCAGTCGACATGAGTGGAGATCGCCCGAAGCGTCCCCTTTCCG
CCTACATGCTGTGGCTCAACGAGACCCGCGAACAGATCAAGAAGGATAAT
CCCGGCAGCAAGGTGACAGACATCGCCAAGCGGGGCGGAGAACTCTGGCG
CGGACTGAAGGATAAGACCGAGTGGGAGCAGAAGGCCATCAAAATGAAGG
AGGAGTACAACAAGGCGGTAAAGGAGTACGAGGCCAATGGCGGCACCGAT
TCGGGAGCGCCCAAGAAGCGAAAGAAGGCGGCCGCCAAGCCAGCCAAGAA
GGCCAAGAAGAAAGAGTCCTCCGAGGAGGAGGAGGAGGACGAGAGCGAGG
CAAGCTTTCTAGACC

BO12396.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17921-PB 336 HmgZ-RB 1..333 17..349 1665 100 Plus
CG17921-PA 336 HmgZ-RA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
HmgZ-RD 765 CG17921-RD 298..630 17..349 1665 100 Plus
HmgZ-RC 1188 CG17921-RC 219..551 17..349 1665 100 Plus
HmgZ-RA 1184 CG17921-RA 215..547 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21698125..21698304 349..170 900 100 Minus
2R 25286936 2R 21698387..21698540 170..17 770 100 Minus
2R 25286936 2R 21715495..21715614 47..166 195 77.5 Plus
Blast to na_te.dros performed on 2015-02-13 01:48:00 has no hits.

BO12396.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:49 Download gff for BO12396.5prime
Subject Subject Range Query Range Percent Splice Strand
HmgZ-PB 1..336 17..350 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:12 Download gff for BO12396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17921-PA 1..336 17..350 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:49 Download gff for BO12396.5prime
Subject Subject Range Query Range Percent Splice Strand
HmgZ-RB 233..572 9..349 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:43 Download gff for BO12396.5prime
Subject Subject Range Query Range Percent Splice Strand
HmgZ-RA 208..547 9..349 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:43 Download gff for BO12396.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21698125..21698304 170..349 100 <- Minus
2R 21698388..21698547 9..169 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:49 Download gff for BO12396.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17585630..17585809 170..349 100 <- Minus
arm_2R 17585893..17586052 9..169 97   Minus

BO12396.complete Sequence

367 bp assembled on 2006-12-18

GenBank Submission: FJ632432

> BO12396.complete
GAAGTTATCAGTCGACATGAGTGGAGATCGCCCGAAGCGTCCCCTTTCCG
CCTACATGCTGTGGCTCAACGAGACCCGCGAACAGATCAAGAAGGATAAT
CCCGGCAGCAAGGTGACAGACATCGCCAAGCGGGGCGGAGAACTCTGGCG
CGGACTGAAGGATAAGACCGAGTGGGAGCAGAAGGCCATCAAAATGAAGG
AGGAGTACAACAAGGCGGTAAAGGAGTACGAGGCCAATGGCGGCACCGAT
TCGGGAGCGCCCAAGAAGCGAAAGAAGGCGGCCGCCAAGCCAGCCAAGAA
GGCCAAGAAGAAAGAGTCCTCCGAGGAGGAGGAGGAGGACGAGAGCGAGG
CAAGCTTTCTAGACCAT

BO12396.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
HmgZ-RD 336 CG17921-PD 1..333 17..349 1665 100 Plus
HmgZ-RC 336 CG17921-PC 1..333 17..349 1665 100 Plus
HmgZ-RA 336 CG17921-PA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
HmgZ-RD 765 CG17921-RD 298..630 17..349 1665 100 Plus
HmgZ-RC 1188 CG17921-RC 219..551 17..349 1665 100 Plus
HmgZ-RA 1184 CG17921-RA 215..547 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21698125..21698304 349..170 900 100 Minus
2R 25286936 2R 21698387..21698540 170..17 770 100 Minus
2R 25286936 2R 21715495..21715614 47..166 195 77.5 Plus
Blast to na_te.dros performed on 2014-11-27 14:24:24 has no hits.

BO12396.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:20 Download gff for BO12396.complete
Subject Subject Range Query Range Percent Splice Strand
HmgZ-RA 1..336 17..350 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:32 Download gff for BO12396.complete
Subject Subject Range Query Range Percent Splice Strand
HmgZ-RA 286..625 9..349 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:09 Download gff for BO12396.complete
Subject Subject Range Query Range Percent Splice Strand
HmgZ-RB 240..572 17..351 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:20 Download gff for BO12396.complete
Subject Subject Range Query Range Percent Splice Strand
HmgZ-RA 286..625 9..349 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:48 Download gff for BO12396.complete
Subject Subject Range Query Range Percent Splice Strand
HmgZ-RA 215..547 17..351 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:48 Download gff for BO12396.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21698123..21698304 170..351 98 <- Minus
2R 21698388..21698540 17..169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:09 Download gff for BO12396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17585628..17585809 170..351 98 <- Minus
arm_2R 17585893..17586045 17..169 100   Minus

BO12396.pep Sequence

Translation from 16 to 367

> BO12396.pep
MSGDRPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKDK
TEWEQKAIKMKEEYNKAVKEYEANGGTDSGAPKKRKKAAAKPAKKAKKKE
SSEEEEEDESEASFLDH

BO12396.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
HmgZ-PD 111 CG17921-PD 1..111 1..111 579 100 Plus
HmgZ-PC 111 CG17921-PC 1..111 1..111 579 100 Plus
HmgZ-PA 111 CG17921-PA 1..111 1..111 579 100 Plus
HmgZ-PB 111 CG17921-PB 1..111 1..111 579 100 Plus
HmgD-PD 112 CG17950-PD 3..112 4..111 382 64.9 Plus