Clone Sequence Records
BO12396.3prime Sequence
365 bp (364 high quality bases) assembled on 2006-04-20
> BO12396.3prime
ATGGTCTAGAAAGCTTGCCTCGCTCTCGTCCTCCTCCTCCTCCTCGGAGG
ACTCTTTCTTCTTGGCCTTCTTGGCTGGCTTGGCGGCCGCCTTCTTTCGC
TTCTTGGGCGCTCCCGAATCGGTGCCGCCATTGGCCTCGTACTCCTTTAC
CGCCTTGTTGTACTCCTCCTTCATTTTGATGGCCTTCTGCTCCCACTCGG
TCTTATCCTTCAGTCCGCGCCAGAGTTCTCCGCCCCGCTTGGCGATGTCT
GTCACCTTGCTGCCGGGATTATCCTTCTTGATCTGTTCGCGGGTCTCGTT
GAGCCACAGCATGTAGGCGGAAAGGGGACGCTTCGGGCGATCTCCACTCA
TGTCGACTGATAACT
BO12396.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17921-PB | 336 | HmgZ-RB | 1..333 | 351..19 | 1665 | 100 | Minus |
CG17921-PA | 336 | HmgZ-RA | 1..333 | 351..19 | 1665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgZ-RD | 765 | CG17921-RD | 298..630 | 351..19 | 1665 | 100 | Minus |
HmgZ-RC | 1188 | CG17921-RC | 219..551 | 351..19 | 1665 | 100 | Minus |
HmgZ-RA | 1184 | CG17921-RA | 215..547 | 351..19 | 1665 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21698125..21698304 | 19..198 | 900 | 100 | Plus |
2R | 25286936 | 2R | 21698387..21698540 | 198..351 | 770 | 100 | Plus |
2R | 25286936 | 2R | 21715495..21715614 | 321..202 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:04:03 has no hits.
BO12396.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:48 Download gff for
BO12396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgZ-PB | 1..336 | 18..351 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:10 Download gff for
BO12396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17921-PA | 1..336 | 18..351 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:46:00 Download gff for
BO12396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgZ-RB | 233..572 | 19..359 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:41 Download gff for
BO12396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgZ-RA | 208..547 | 19..359 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:41 Download gff for
BO12396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21698125..21698304 | 19..198 | 100 | <- | Plus |
2R | 21698388..21698547 | 199..359 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:46:00 Download gff for
BO12396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17585630..17585809 | 19..198 | 100 | <- | Plus |
arm_2R | 17585893..17586052 | 199..359 | 97 | | Plus |
BO12396.5prime Sequence
365 bp (364 high quality bases) assembled on 2006-04-20
> BO12396.5prime
GAAGTTATCAGTCGACATGAGTGGAGATCGCCCGAAGCGTCCCCTTTCCG
CCTACATGCTGTGGCTCAACGAGACCCGCGAACAGATCAAGAAGGATAAT
CCCGGCAGCAAGGTGACAGACATCGCCAAGCGGGGCGGAGAACTCTGGCG
CGGACTGAAGGATAAGACCGAGTGGGAGCAGAAGGCCATCAAAATGAAGG
AGGAGTACAACAAGGCGGTAAAGGAGTACGAGGCCAATGGCGGCACCGAT
TCGGGAGCGCCCAAGAAGCGAAAGAAGGCGGCCGCCAAGCCAGCCAAGAA
GGCCAAGAAGAAAGAGTCCTCCGAGGAGGAGGAGGAGGACGAGAGCGAGG
CAAGCTTTCTAGACC
BO12396.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17921-PB | 336 | HmgZ-RB | 1..333 | 17..349 | 1665 | 100 | Plus |
CG17921-PA | 336 | HmgZ-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgZ-RD | 765 | CG17921-RD | 298..630 | 17..349 | 1665 | 100 | Plus |
HmgZ-RC | 1188 | CG17921-RC | 219..551 | 17..349 | 1665 | 100 | Plus |
HmgZ-RA | 1184 | CG17921-RA | 215..547 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21698125..21698304 | 349..170 | 900 | 100 | Minus |
2R | 25286936 | 2R | 21698387..21698540 | 170..17 | 770 | 100 | Minus |
2R | 25286936 | 2R | 21715495..21715614 | 47..166 | 195 | 77.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:48:00 has no hits.
BO12396.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:49 Download gff for
BO12396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgZ-PB | 1..336 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:12 Download gff for
BO12396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17921-PA | 1..336 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:49 Download gff for
BO12396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgZ-RB | 233..572 | 9..349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:43 Download gff for
BO12396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgZ-RA | 208..547 | 9..349 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:43 Download gff for
BO12396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21698125..21698304 | 170..349 | 100 | <- | Minus |
2R | 21698388..21698547 | 9..169 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:49 Download gff for
BO12396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17585630..17585809 | 170..349 | 100 | <- | Minus |
arm_2R | 17585893..17586052 | 9..169 | 97 | | Minus |
BO12396.complete Sequence
367 bp assembled on 2006-12-18
GenBank Submission: FJ632432
> BO12396.complete
GAAGTTATCAGTCGACATGAGTGGAGATCGCCCGAAGCGTCCCCTTTCCG
CCTACATGCTGTGGCTCAACGAGACCCGCGAACAGATCAAGAAGGATAAT
CCCGGCAGCAAGGTGACAGACATCGCCAAGCGGGGCGGAGAACTCTGGCG
CGGACTGAAGGATAAGACCGAGTGGGAGCAGAAGGCCATCAAAATGAAGG
AGGAGTACAACAAGGCGGTAAAGGAGTACGAGGCCAATGGCGGCACCGAT
TCGGGAGCGCCCAAGAAGCGAAAGAAGGCGGCCGCCAAGCCAGCCAAGAA
GGCCAAGAAGAAAGAGTCCTCCGAGGAGGAGGAGGAGGACGAGAGCGAGG
CAAGCTTTCTAGACCAT
BO12396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgZ-RD | 336 | CG17921-PD | 1..333 | 17..349 | 1665 | 100 | Plus |
HmgZ-RC | 336 | CG17921-PC | 1..333 | 17..349 | 1665 | 100 | Plus |
HmgZ-RA | 336 | CG17921-PA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgZ-RD | 765 | CG17921-RD | 298..630 | 17..349 | 1665 | 100 | Plus |
HmgZ-RC | 1188 | CG17921-RC | 219..551 | 17..349 | 1665 | 100 | Plus |
HmgZ-RA | 1184 | CG17921-RA | 215..547 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21698125..21698304 | 349..170 | 900 | 100 | Minus |
2R | 25286936 | 2R | 21698387..21698540 | 170..17 | 770 | 100 | Minus |
2R | 25286936 | 2R | 21715495..21715614 | 47..166 | 195 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:24:24 has no hits.
BO12396.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:20 Download gff for
BO12396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgZ-RA | 1..336 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:32 Download gff for
BO12396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgZ-RA | 286..625 | 9..349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:09 Download gff for
BO12396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgZ-RB | 240..572 | 17..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:20 Download gff for
BO12396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgZ-RA | 286..625 | 9..349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:48 Download gff for
BO12396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgZ-RA | 215..547 | 17..351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:48 Download gff for
BO12396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21698123..21698304 | 170..351 | 98 | <- | Minus |
2R | 21698388..21698540 | 17..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:09 Download gff for
BO12396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17585628..17585809 | 170..351 | 98 | <- | Minus |
arm_2R | 17585893..17586045 | 17..169 | 100 | | Minus |
BO12396.pep Sequence
Translation from 16 to 367
> BO12396.pep
MSGDRPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKDK
TEWEQKAIKMKEEYNKAVKEYEANGGTDSGAPKKRKKAAAKPAKKAKKKE
SSEEEEEDESEASFLDH
BO12396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgZ-PD | 111 | CG17921-PD | 1..111 | 1..111 | 579 | 100 | Plus |
HmgZ-PC | 111 | CG17921-PC | 1..111 | 1..111 | 579 | 100 | Plus |
HmgZ-PA | 111 | CG17921-PA | 1..111 | 1..111 | 579 | 100 | Plus |
HmgZ-PB | 111 | CG17921-PB | 1..111 | 1..111 | 579 | 100 | Plus |
HmgD-PD | 112 | CG17950-PD | 3..112 | 4..111 | 382 | 64.9 | Plus |