Clone BO12401 Report

Search the DGRC for BO12401

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCyp6t1-RA
Protein status:BO12401.pep:
Sequenced Size:1621

Clone Sequence Records

BO12401.5prime Sequence

900 bp (830 high quality bases) assembled on 2006-05-08

> BO12401.5prime
GAAGTTATCAGTCGACATGATCGCTGTTTTTTCACTCATTGCGGCTGCTC
TCGCCGTTGGATCCCTCGTTCTGCTCCCCGTTGTCCTAAGAGGTGGATGT
CTACTTGTCGTAACAATCGTTTGGCTGTGGCAAATTCTACACTTCTGGCA
TTGGCGACGTCTGGGCGTCCCCTTTGTTCCGGCTGCCCCATTTGTGGGGA
ATGTGTGGAATCTTTTGCGTGGAGCCTGCTGCTTTGGCGATCAGTTTCGC
GAGTTGTACGAGAGTAAGGAGGCTGCCGGCCGCGCCTTCGTGGGAATTGA
CGTGCTGCACAATCACGCACTGCTTCTTCGAGATCCGGCTCTGATCAAGC
GCATTATGGTGGAAGACTTCGCTCAGTTCTCGAGCCGCTTTGAGACGACA
GATCCCACTTGTGACACAATGGGATCGCAGAACCTTTTCTTTTCCAAATA
CGAGACTTGGCGGGAGACGCACAAGATCTTTGCGCCCTTCTTTGCTGCGG
GAAAGGTGCGCAATATGTACGGGCTTCTGGAAAACATTGGACAGAAGCTC
GAGGAGCACATGGAGCAAAAGCTAAGCGGCAGGGATAGCATGGAACTGGA
GGTCAAGCAGTTGTGTGCCCTCTTCACAACGGACATCATTGCATCCCTGG
CCTTTGGCATAGAGGCGCACAGTCTGCAAAATCCCGAGGCAGAGTTTCGT
CGTATGTGCATTGAGGTCAATGACCCCAGGCCAAAGCGCCTCCTACACCT
CTTCACCATGTTCTTCTTTCCGCGACTATCGCACAGGGTTGGCACCCATC
TTTACTCCGAAGAGTATGAGCGCTTTATGCGCAAGTCCATGGACTACGTT
CTTTTCCAGCGCGCGGAAAGTGGGGAAAATCGACACGATTTGATCGATAT

BO12401.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1644-PA 1590 Cyp6t1-RA 1..884 17..900 4395 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6t1-RA 1785 CG1644-RA 81..964 17..900 4405 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21518255..21519138 900..17 4405 99.9 Minus
2L 23513712 2L 21283834..21284098 483..219 575 81.1 Minus
2L 23513712 2L 21283496..21283613 900..783 230 79.7 Minus
2L 23513712 2L 21283632..21283704 739..667 215 86.3 Minus
Blast to na_te.dros performed on 2015-02-11 17:02:49 has no hits.

BO12401.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:49 Download gff for BO12401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1644-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:14 Download gff for BO12401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1644-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:09:24 Download gff for BO12401.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6t1-RA 25..915 10..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:31 Download gff for BO12401.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6t1-RA 74..964 10..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:31 Download gff for BO12401.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21518255..21519145 10..900 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:09:24 Download gff for BO12401.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21389282..21390172 10..900 99   Minus

BO12401.complete Sequence

1621 bp assembled on 2008-01-17

GenBank Submission: FJ632433

> BO12401.complete
GAAGTTATCAGTCGACATGATCGCTGTTTTTTCACTCATTGCGGCTGCTC
TCGCCGTTGGATCCCTCGTTCTGCTCCCCGTTGTCCTAAGAGGTGGATGT
CTACTTGTCGTAACAATCGTTTGGCTGTGGCAAATTCTACACTTCTGGCA
TTGGCGACGTCTGGGCGTCCCCTTTGTTCCGGCTGCCCCATTTGTGGGGA
ATGTGTGGAATCTTTTGCGTGGAGCCTGCTGCTTTGGCGATCAGTTTCGC
GAGTTGTACGAGAGTAAGGAGGCTGCCGGCCGCGCCTTCGTGGGAATTGA
CGTGCTGCACAATCACGCACTGCTTCTTCGAGATCCGGCTCTGATCAAGC
GCATTATGGTGGAAGACTTCGCTCAGTTCTCGAGCCGCTTTGAGACGACA
GATCCCACTTGTGACACAATGGGATCGCAGAACCTTTTCTTTTCCAAATA
CGAGACTTGGCGGGAGACGCACAAGATCTTTGCGCCCTTCTTTGCTGCGG
GAAAGGTGCGCAATATGTACGGGCTTCTGGAAAACATTGGACAGAAGCTC
GAGGAGCACATGGAGCAAAAGCTAAGCGGCAGGGATAGCATGGAACTGGA
GGTCAAGCAGTTGTGTGCCCTCTTCACAACGGACATCATTGCATCCCTGG
CCTTTGGCATAGAGGCGCACAGTCTGCAAAATCCCGAGGCAGAGTTTCGT
CGTATGTGCATTGAGGTCAATGACCCCAGGCCAAAGCGCCTCCTACACCT
CTTCACCATGTTCTTCTTTCCGCGACTATCGCACAGGGTTGGCACCCATC
TTTACTCCGAAGAGTATGAGCGCTTTATGCGCAAGTCCATGGACTACGTT
CTTTCCCAGCGCGCGGAAAGTGGGGAAAATCGACACGATTTGATCGATAT
ATTCTTGCAGCTGAAGCGTACGGAGCCGGCGGAAAGCATAATCCATCGGC
CAGATTTCTTTGCAGCCCAGGCTGCTTTTCTGCTTTTGGCCGGCTTCGAC
ACCTCGTCGTCCACCATCACGTTTGCGCTGTACGAGCTGGCCAAGAACAC
CACGATTCAGGACCGCCTGCGGACGGAGCTTCGGGCTGCCTTGCAGTCTA
GCCAAGATCGGCAACTGAGCTGCGACACCGTCACCGGATTGGTTTACCTG
CGACAGGTAGTTGATGAGGTCTTGAGACTTTATCCGCCCACAGCTTTCCT
GGACCGATGCTGCAATTCCCGAACGGGCTATGATCTCTCGCCGTGGAACG
GTGGATCGCCATTCAAATTGCGTGCGGGCACGCCTGTCTACATATCGGTG
TTGGGAATCCATCGTGATGCACAGTACTGGCCAAATCCCGAAGTCTTCGA
CCCGGAGCGCTTCTCAGCGGAGCAACGGCAACAGCACCATCCCATGACCT
ATTTGCCCTTTGGCGCAGGACCAAGAGGTTGCATCGGGACTCTTTTGGGG
CAGTTGGAGATCAAAGTTGGACTGCTGCACATCCTAAATCACTTTCGGGT
TGAGGTCTGCGAAAGGACGCTACCAGAAATGCGGTTCGATCCCAAGGCCT
TTGTACTCACTGCTCACAATGGGACCTATCTACGTTTTGTTAAGAATTCT
CTTGCAAGCTTTCTAGACCAT

BO12401.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6t1-RA 1590 CG1644-PA 1..1587 17..1603 7935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6t1-RA 1785 CG1644-RA 81..1667 17..1603 7935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21517552..21519138 1603..17 7935 100 Minus
2L 23513712 2L 21283834..21284098 483..219 575 81.1 Minus
2L 23513712 2L 21283248..21283613 1158..783 520 77.1 Minus
2L 23513712 2L 21282814..21283014 1603..1403 480 82.6 Minus
2L 23513712 2L 21283632..21283704 739..667 215 86.3 Minus
Blast to na_te.dros performed on 2014-11-27 14:27:02 has no hits.

BO12401.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:29 Download gff for BO12401.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6t1-RA 1..1590 17..1606 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:02 Download gff for BO12401.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6t1-RA 32..1618 17..1605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:28 Download gff for BO12401.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6t1-RA 32..1618 17..1605 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:29 Download gff for BO12401.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6t1-RA 25..1622 10..1607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:50 Download gff for BO12401.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6t1-RA 81..1667 17..1605 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:50 Download gff for BO12401.complete
Subject Subject Range Query Range Percent Splice Strand
X 21517549..21519138 17..1605 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:28 Download gff for BO12401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21388576..21390165 17..1605 99   Minus

BO12401.pep Sequence

Translation from 16 to 1621

> BO12401.pep
MIAVFSLIAAALAVGSLVLLPVVLRGGCLLVVTIVWLWQILHFWHWRRLG
VPFVPAAPFVGNVWNLLRGACCFGDQFRELYESKEAAGRAFVGIDVLHNH
ALLLRDPALIKRIMVEDFAQFSSRFETTDPTCDTMGSQNLFFSKYETWRE
THKIFAPFFAAGKVRNMYGLLENIGQKLEEHMEQKLSGRDSMELEVKQLC
ALFTTDIIASLAFGIEAHSLQNPEAEFRRMCIEVNDPRPKRLLHLFTMFF
FPRLSHRVGTHLYSEEYERFMRKSMDYVLSQRAESGENRHDLIDIFLQLK
RTEPAESIIHRPDFFAAQAAFLLLAGFDTSSSTITFALYELAKNTTIQDR
LRTELRAALQSSQDRQLSCDTVTGLVYLRQVVDEVLRLYPPTAFLDRCCN
SRTGYDLSPWNGGSPFKLRAGTPVYISVLGIHRDAQYWPNPEVFDPERFS
AEQRQQHHPMTYLPFGAGPRGCIGTLLGQLEIKVGLLHILNHFRVEVCER
TLPEMRFDPKAFVLTAHNGTYLRFVKNSLASFLDH

BO12401.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6t1-PA 529 CG1644-PA 1..529 1..529 2787 100 Plus
Cyp6g2-PA 519 CG8859-PA 12..517 31..529 1002 40.3 Plus
Cyp6v1-PC 520 CG1829-PC 14..516 31..523 920 38.1 Plus
Cyp6v1-PB 520 CG1829-PB 14..516 31..523 920 38.1 Plus
Cyp6v1-PA 520 CG1829-PA 14..516 31..523 920 38.1 Plus