Clone Sequence Records
BO12401.5prime Sequence
900 bp (830 high quality bases) assembled on 2006-05-08
> BO12401.5prime
GAAGTTATCAGTCGACATGATCGCTGTTTTTTCACTCATTGCGGCTGCTC
TCGCCGTTGGATCCCTCGTTCTGCTCCCCGTTGTCCTAAGAGGTGGATGT
CTACTTGTCGTAACAATCGTTTGGCTGTGGCAAATTCTACACTTCTGGCA
TTGGCGACGTCTGGGCGTCCCCTTTGTTCCGGCTGCCCCATTTGTGGGGA
ATGTGTGGAATCTTTTGCGTGGAGCCTGCTGCTTTGGCGATCAGTTTCGC
GAGTTGTACGAGAGTAAGGAGGCTGCCGGCCGCGCCTTCGTGGGAATTGA
CGTGCTGCACAATCACGCACTGCTTCTTCGAGATCCGGCTCTGATCAAGC
GCATTATGGTGGAAGACTTCGCTCAGTTCTCGAGCCGCTTTGAGACGACA
GATCCCACTTGTGACACAATGGGATCGCAGAACCTTTTCTTTTCCAAATA
CGAGACTTGGCGGGAGACGCACAAGATCTTTGCGCCCTTCTTTGCTGCGG
GAAAGGTGCGCAATATGTACGGGCTTCTGGAAAACATTGGACAGAAGCTC
GAGGAGCACATGGAGCAAAAGCTAAGCGGCAGGGATAGCATGGAACTGGA
GGTCAAGCAGTTGTGTGCCCTCTTCACAACGGACATCATTGCATCCCTGG
CCTTTGGCATAGAGGCGCACAGTCTGCAAAATCCCGAGGCAGAGTTTCGT
CGTATGTGCATTGAGGTCAATGACCCCAGGCCAAAGCGCCTCCTACACCT
CTTCACCATGTTCTTCTTTCCGCGACTATCGCACAGGGTTGGCACCCATC
TTTACTCCGAAGAGTATGAGCGCTTTATGCGCAAGTCCATGGACTACGTT
CTTTTCCAGCGCGCGGAAAGTGGGGAAAATCGACACGATTTGATCGATAT
BO12401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1644-PA | 1590 | Cyp6t1-RA | 1..884 | 17..900 | 4395 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6t1-RA | 1785 | CG1644-RA | 81..964 | 17..900 | 4405 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21518255..21519138 | 900..17 | 4405 | 99.9 | Minus |
2L | 23513712 | 2L | 21283834..21284098 | 483..219 | 575 | 81.1 | Minus |
2L | 23513712 | 2L | 21283496..21283613 | 900..783 | 230 | 79.7 | Minus |
2L | 23513712 | 2L | 21283632..21283704 | 739..667 | 215 | 86.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:02:49 has no hits.
BO12401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:49 Download gff for
BO12401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1644-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:14 Download gff for
BO12401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1644-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:09:24 Download gff for
BO12401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6t1-RA | 25..915 | 10..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:31 Download gff for
BO12401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6t1-RA | 74..964 | 10..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:31 Download gff for
BO12401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21518255..21519145 | 10..900 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:09:24 Download gff for
BO12401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21389282..21390172 | 10..900 | 99 | | Minus |
BO12401.complete Sequence
1621 bp assembled on 2008-01-17
GenBank Submission: FJ632433
> BO12401.complete
GAAGTTATCAGTCGACATGATCGCTGTTTTTTCACTCATTGCGGCTGCTC
TCGCCGTTGGATCCCTCGTTCTGCTCCCCGTTGTCCTAAGAGGTGGATGT
CTACTTGTCGTAACAATCGTTTGGCTGTGGCAAATTCTACACTTCTGGCA
TTGGCGACGTCTGGGCGTCCCCTTTGTTCCGGCTGCCCCATTTGTGGGGA
ATGTGTGGAATCTTTTGCGTGGAGCCTGCTGCTTTGGCGATCAGTTTCGC
GAGTTGTACGAGAGTAAGGAGGCTGCCGGCCGCGCCTTCGTGGGAATTGA
CGTGCTGCACAATCACGCACTGCTTCTTCGAGATCCGGCTCTGATCAAGC
GCATTATGGTGGAAGACTTCGCTCAGTTCTCGAGCCGCTTTGAGACGACA
GATCCCACTTGTGACACAATGGGATCGCAGAACCTTTTCTTTTCCAAATA
CGAGACTTGGCGGGAGACGCACAAGATCTTTGCGCCCTTCTTTGCTGCGG
GAAAGGTGCGCAATATGTACGGGCTTCTGGAAAACATTGGACAGAAGCTC
GAGGAGCACATGGAGCAAAAGCTAAGCGGCAGGGATAGCATGGAACTGGA
GGTCAAGCAGTTGTGTGCCCTCTTCACAACGGACATCATTGCATCCCTGG
CCTTTGGCATAGAGGCGCACAGTCTGCAAAATCCCGAGGCAGAGTTTCGT
CGTATGTGCATTGAGGTCAATGACCCCAGGCCAAAGCGCCTCCTACACCT
CTTCACCATGTTCTTCTTTCCGCGACTATCGCACAGGGTTGGCACCCATC
TTTACTCCGAAGAGTATGAGCGCTTTATGCGCAAGTCCATGGACTACGTT
CTTTCCCAGCGCGCGGAAAGTGGGGAAAATCGACACGATTTGATCGATAT
ATTCTTGCAGCTGAAGCGTACGGAGCCGGCGGAAAGCATAATCCATCGGC
CAGATTTCTTTGCAGCCCAGGCTGCTTTTCTGCTTTTGGCCGGCTTCGAC
ACCTCGTCGTCCACCATCACGTTTGCGCTGTACGAGCTGGCCAAGAACAC
CACGATTCAGGACCGCCTGCGGACGGAGCTTCGGGCTGCCTTGCAGTCTA
GCCAAGATCGGCAACTGAGCTGCGACACCGTCACCGGATTGGTTTACCTG
CGACAGGTAGTTGATGAGGTCTTGAGACTTTATCCGCCCACAGCTTTCCT
GGACCGATGCTGCAATTCCCGAACGGGCTATGATCTCTCGCCGTGGAACG
GTGGATCGCCATTCAAATTGCGTGCGGGCACGCCTGTCTACATATCGGTG
TTGGGAATCCATCGTGATGCACAGTACTGGCCAAATCCCGAAGTCTTCGA
CCCGGAGCGCTTCTCAGCGGAGCAACGGCAACAGCACCATCCCATGACCT
ATTTGCCCTTTGGCGCAGGACCAAGAGGTTGCATCGGGACTCTTTTGGGG
CAGTTGGAGATCAAAGTTGGACTGCTGCACATCCTAAATCACTTTCGGGT
TGAGGTCTGCGAAAGGACGCTACCAGAAATGCGGTTCGATCCCAAGGCCT
TTGTACTCACTGCTCACAATGGGACCTATCTACGTTTTGTTAAGAATTCT
CTTGCAAGCTTTCTAGACCAT
BO12401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6t1-RA | 1590 | CG1644-PA | 1..1587 | 17..1603 | 7935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6t1-RA | 1785 | CG1644-RA | 81..1667 | 17..1603 | 7935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21517552..21519138 | 1603..17 | 7935 | 100 | Minus |
2L | 23513712 | 2L | 21283834..21284098 | 483..219 | 575 | 81.1 | Minus |
2L | 23513712 | 2L | 21283248..21283613 | 1158..783 | 520 | 77.1 | Minus |
2L | 23513712 | 2L | 21282814..21283014 | 1603..1403 | 480 | 82.6 | Minus |
2L | 23513712 | 2L | 21283632..21283704 | 739..667 | 215 | 86.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:27:02 has no hits.
BO12401.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:29 Download gff for
BO12401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6t1-RA | 1..1590 | 17..1606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:02 Download gff for
BO12401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6t1-RA | 32..1618 | 17..1605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:28 Download gff for
BO12401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6t1-RA | 32..1618 | 17..1605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:29 Download gff for
BO12401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6t1-RA | 25..1622 | 10..1607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:50 Download gff for
BO12401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6t1-RA | 81..1667 | 17..1605 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:50 Download gff for
BO12401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21517549..21519138 | 17..1605 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:28 Download gff for
BO12401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21388576..21390165 | 17..1605 | 99 | | Minus |
BO12401.pep Sequence
Translation from 16 to 1621
> BO12401.pep
MIAVFSLIAAALAVGSLVLLPVVLRGGCLLVVTIVWLWQILHFWHWRRLG
VPFVPAAPFVGNVWNLLRGACCFGDQFRELYESKEAAGRAFVGIDVLHNH
ALLLRDPALIKRIMVEDFAQFSSRFETTDPTCDTMGSQNLFFSKYETWRE
THKIFAPFFAAGKVRNMYGLLENIGQKLEEHMEQKLSGRDSMELEVKQLC
ALFTTDIIASLAFGIEAHSLQNPEAEFRRMCIEVNDPRPKRLLHLFTMFF
FPRLSHRVGTHLYSEEYERFMRKSMDYVLSQRAESGENRHDLIDIFLQLK
RTEPAESIIHRPDFFAAQAAFLLLAGFDTSSSTITFALYELAKNTTIQDR
LRTELRAALQSSQDRQLSCDTVTGLVYLRQVVDEVLRLYPPTAFLDRCCN
SRTGYDLSPWNGGSPFKLRAGTPVYISVLGIHRDAQYWPNPEVFDPERFS
AEQRQQHHPMTYLPFGAGPRGCIGTLLGQLEIKVGLLHILNHFRVEVCER
TLPEMRFDPKAFVLTAHNGTYLRFVKNSLASFLDH
BO12401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6t1-PA | 529 | CG1644-PA | 1..529 | 1..529 | 2787 | 100 | Plus |
Cyp6g2-PA | 519 | CG8859-PA | 12..517 | 31..529 | 1002 | 40.3 | Plus |
Cyp6v1-PC | 520 | CG1829-PC | 14..516 | 31..523 | 920 | 38.1 | Plus |
Cyp6v1-PB | 520 | CG1829-PB | 14..516 | 31..523 | 920 | 38.1 | Plus |
Cyp6v1-PA | 520 | CG1829-PA | 14..516 | 31..523 | 920 | 38.1 | Plus |