Clone Sequence Records
BO12402.5prime Sequence
527 bp (526 high quality bases) assembled on 2006-05-08
> BO12402.5prime
GAAGTTATCAGTCGACATGCCTCCCAAATTCGACCCAACGGAAGTTAAAT
TGGTGTACCTGCGTTGCGTGGGCGGAGAAGTCGGTGCCACATCCTCCCTG
GCCCCAAAGATCGGTCCCCTCGGTCTGTCGCCCAAGAAAATCGGTGATGA
CATCGCCAAGGCCACCTCCGACTGGAAGGGTCTGAAGATCACCGTCTGCC
TGACCATCCAGAACCGACAGGCCGCCATCTCCGTGGTTCCCTCCGCCGCC
TCGCTGATCATCAAGGCTCTGAAGGAACCCCCACGTGACCGCAAGAAGCA
GAAGAACATCAAGCACAGTGGAAACATTGGCTTCGAAGACATTCTGGCCA
TCGCCCGCGTGATGAGGCCCAGGTCCATGGCCCGTGAGTTGAAGGGAACC
TGCAAGGAAGTTCTGGGAACCGCCCAGAGCGTCGGCTGCACCGTTGACGG
AAAGCACCCTCACGATGTTATTGACGAACTGAACGAGGGCTCCATTGAAG
TCCCCGCGGAAGCAAGCTTTCTAGACC
BO12402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3195-PA | 498 | RpL12-RA | 1..495 | 17..511 | 2475 | 100 | Plus |
CG3195-PB | 498 | RpL12-RB | 1..495 | 17..511 | 2475 | 100 | Plus |
CG3195-PC | 498 | RpL12-RC | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL12-RC | 1095 | CG3195-RC | 93..587 | 17..511 | 2475 | 100 | Plus |
RpL12-RB | 640 | CG3195-RB | 85..579 | 17..511 | 2475 | 100 | Plus |
RpL12-RA | 648 | CG3195-RA | 93..587 | 17..511 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24061150..24061352 | 309..511 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 24060812..24060993 | 127..308 | 910 | 100 | Plus |
2R | 25286936 | 2R | 24060675..24060749 | 53..127 | 375 | 100 | Plus |
2R | 25286936 | 2R | 24060538..24060574 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:27:22 has no hits.
BO12402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:52 Download gff for
BO12402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-PC | 1..498 | 17..515 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:16 Download gff for
BO12402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3195-PC | 1..498 | 17..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:49:14 Download gff for
BO12402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RA | 89..590 | 13..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:52 Download gff for
BO12402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RA | 89..590 | 13..515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:52 Download gff for
BO12402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24060534..24060574 | 13..53 | 95 | -> | Plus |
2R | 24060676..24060749 | 54..127 | 100 | -> | Plus |
2R | 24060813..24060993 | 128..308 | 100 | -> | Plus |
2R | 24061150..24061355 | 309..515 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:49:14 Download gff for
BO12402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19948057..19948097 | 13..53 | 95 | -> | Plus |
arm_2R | 19948199..19948272 | 54..127 | 100 | -> | Plus |
arm_2R | 19948336..19948516 | 128..308 | 100 | -> | Plus |
arm_2R | 19948673..19948878 | 309..515 | 99 | | Plus |
BO12402.3prime Sequence
527 bp (526 high quality bases) assembled on 2006-05-08
> BO12402.3prime
ATGGTCTAGAAAGCTTGCTTCCGCGGGGACTTCAATGGAGCCCTCGTTCA
GTTCGTCAATAACATCGTGAGGGTGCTTTCCGTCAACGGTGCAGCCGACG
CTCTGGGCGGTTCCCAGAACTTCCTTGCAGGTTCCCTTCAACTCACGGGC
CATGGACCTGGGCCTCATCACGCGGGCGATGGCCAGAATGTCTTCGAAGC
CAATGTTTCCACTGTGCTTGATGTTCTTCTGCTTCTTGCGGTCACGTGGG
GGTTCCTTCAGAGCCTTGATGATCAGCGAGGCGGCGGAGGGAACCACGGA
GATGGCGGCCTGTCGGTTCTGGATGGTCAGGCAGACGGTGATCTTCAGAC
CCTTCCAGTCGGAGGTGGCCTTGGCGATGTCATCACCGATTTTCTTGGGC
GACAGACCGAGGGGACCGATCTTTGGGGCCAGGGAGGATGTGGCACCGAC
TTCTCCGCCCACGCAACGCAGGTACACCAATTTAACTTCCGTTGGGTCGA
ATTTGGGAGGCATGTCGACTGATAACT
BO12402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3195-PA | 498 | RpL12-RA | 1..495 | 513..19 | 2475 | 100 | Minus |
CG3195-PB | 498 | RpL12-RB | 1..495 | 513..19 | 2475 | 100 | Minus |
CG3195-PC | 498 | RpL12-RC | 1..495 | 513..19 | 2475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL12-RC | 1095 | CG3195-RC | 93..587 | 513..19 | 2475 | 100 | Minus |
RpL12-RB | 640 | CG3195-RB | 85..579 | 513..19 | 2475 | 100 | Minus |
RpL12-RA | 648 | CG3195-RA | 93..587 | 513..19 | 2475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24061150..24061352 | 221..19 | 1015 | 100 | Minus |
2R | 25286936 | 2R | 24060812..24060993 | 403..222 | 910 | 100 | Minus |
2R | 25286936 | 2R | 24060675..24060749 | 477..403 | 375 | 100 | Minus |
2R | 25286936 | 2R | 24060538..24060574 | 513..477 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:33:11 has no hits.
BO12402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:51 Download gff for
BO12402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-PC | 1..498 | 15..513 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:15 Download gff for
BO12402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3195-PC | 1..498 | 15..513 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:19:41 Download gff for
BO12402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RA | 89..590 | 15..517 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:33 Download gff for
BO12402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RA | 89..590 | 15..517 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:33 Download gff for
BO12402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24060534..24060574 | 477..517 | 95 | -> | Minus |
2R | 24060676..24060749 | 403..476 | 100 | -> | Minus |
2R | 24060813..24060993 | 222..402 | 100 | -> | Minus |
2R | 24061150..24061355 | 15..221 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:19:41 Download gff for
BO12402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19948057..19948097 | 477..517 | 95 | -> | Minus |
arm_2R | 19948199..19948272 | 403..476 | 100 | -> | Minus |
arm_2R | 19948336..19948516 | 222..402 | 100 | -> | Minus |
arm_2R | 19948673..19948878 | 15..221 | 99 | | Minus |
BO12402.complete Sequence
529 bp assembled on 2006-10-11
GenBank Submission: FJ638698
> BO12402.complete
GAAGTTATCAGTCGACATGCCTCCCAAATTCGACCCAACGGAAGTTAAAT
TGGTGTACCTGCGTTGCGTGGGCGGAGAAGTCGGTGCCACATCCTCCCTG
GCCCCAAAGATCGGTCCCCTCGGTCTGTCGCCCAAGAAAATCGGTGATGA
CATCGCCAAGGCCACCTCCGACTGGAAGGGTCTGAAGATCACCGTCTGCC
TGACCATCCAGAACCGACAGGCCGCCATCTCCGTGGTTCCCTCCGCCGCC
TCGCTGATCATCAAGGCTCTGAAGGAACCCCCACGTGACCGCAAGAAGCA
GAAGAACATCAAGCACAGTGGAAACATTGGCTTCGAAGACATTCTGGCCA
TCGCCCGCGTGATGAGGCCCAGGTCCATGGCCCGTGAGTTGAAGGGAACC
TGCAAGGAAGTTCTGGGAACCGCCCAGAGCGTCGGCTGCACCGTTGACGG
AAAGCACCCTCACGATGTTATTGACGAACTGAACGAGGGCTCCATTGAAG
TCCCCGCGGAAGCAAGCTTTCTAGACCAT
BO12402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL12-RC | 498 | CG3195-PC | 1..495 | 17..511 | 2475 | 100 | Plus |
RpL12-RB | 498 | CG3195-PB | 1..495 | 17..511 | 2475 | 100 | Plus |
RpL12-RA | 498 | CG3195-PA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL12-RC | 1095 | CG3195-RC | 93..587 | 17..511 | 2475 | 100 | Plus |
RpL12-RB | 640 | CG3195-RB | 85..579 | 17..511 | 2475 | 100 | Plus |
RpL12-RA | 648 | CG3195-RA | 93..587 | 17..511 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24061150..24061352 | 309..511 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 24060812..24060993 | 127..308 | 910 | 100 | Plus |
2R | 25286936 | 2R | 24060675..24060749 | 53..127 | 375 | 100 | Plus |
2R | 25286936 | 2R | 24060538..24060574 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:37:33 has no hits.
BO12402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:12 Download gff for
BO12402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RC | 1..498 | 17..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:32 Download gff for
BO12402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RC | 67..568 | 13..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:27 Download gff for
BO12402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RA | 93..587 | 17..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:12 Download gff for
BO12402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RC | 67..568 | 13..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:43 Download gff for
BO12402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL12-RA | 93..587 | 17..513 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:43 Download gff for
BO12402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24060538..24060574 | 17..53 | 100 | -> | Plus |
2R | 24060676..24060749 | 54..127 | 100 | -> | Plus |
2R | 24060813..24060993 | 128..308 | 100 | -> | Plus |
2R | 24061150..24061352 | 309..513 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:27 Download gff for
BO12402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19948336..19948516 | 128..308 | 100 | -> | Plus |
arm_2R | 19948673..19948875 | 309..513 | 99 | | Plus |
arm_2R | 19948061..19948097 | 17..53 | 100 | -> | Plus |
arm_2R | 19948199..19948272 | 54..127 | 100 | -> | Plus |
BO12402.pep Sequence
Translation from 16 to 529
> BO12402.pep
MPPKFDPTEVKLVYLRCVGGEVGATSSLAPKIGPLGLSPKKIGDDIAKAT
SDWKGLKITVCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKQKNIKH
SGNIGFEDILAIARVMRPRSMARELKGTCKEVLGTAQSVGCTVDGKHPHD
VIDELNEGSIEVPAEASFLDH
BO12402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL12-PC | 165 | CG3195-PC | 1..165 | 1..165 | 846 | 100 | Plus |
RpL12-PB | 165 | CG3195-PB | 1..165 | 1..165 | 846 | 100 | Plus |
RpL12-PA | 165 | CG3195-PA | 1..165 | 1..165 | 846 | 100 | Plus |