Clone BO12402 Report

Search the DGRC for BO12402

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptRpL12-RA
Protein status:BO12402.pep: validated full length
Sequenced Size:529

Clone Sequence Records

BO12402.5prime Sequence

527 bp (526 high quality bases) assembled on 2006-05-08

> BO12402.5prime
GAAGTTATCAGTCGACATGCCTCCCAAATTCGACCCAACGGAAGTTAAAT
TGGTGTACCTGCGTTGCGTGGGCGGAGAAGTCGGTGCCACATCCTCCCTG
GCCCCAAAGATCGGTCCCCTCGGTCTGTCGCCCAAGAAAATCGGTGATGA
CATCGCCAAGGCCACCTCCGACTGGAAGGGTCTGAAGATCACCGTCTGCC
TGACCATCCAGAACCGACAGGCCGCCATCTCCGTGGTTCCCTCCGCCGCC
TCGCTGATCATCAAGGCTCTGAAGGAACCCCCACGTGACCGCAAGAAGCA
GAAGAACATCAAGCACAGTGGAAACATTGGCTTCGAAGACATTCTGGCCA
TCGCCCGCGTGATGAGGCCCAGGTCCATGGCCCGTGAGTTGAAGGGAACC
TGCAAGGAAGTTCTGGGAACCGCCCAGAGCGTCGGCTGCACCGTTGACGG
AAAGCACCCTCACGATGTTATTGACGAACTGAACGAGGGCTCCATTGAAG
TCCCCGCGGAAGCAAGCTTTCTAGACC

BO12402.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3195-PA 498 RpL12-RA 1..495 17..511 2475 100 Plus
CG3195-PB 498 RpL12-RB 1..495 17..511 2475 100 Plus
CG3195-PC 498 RpL12-RC 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
RpL12-RC 1095 CG3195-RC 93..587 17..511 2475 100 Plus
RpL12-RB 640 CG3195-RB 85..579 17..511 2475 100 Plus
RpL12-RA 648 CG3195-RA 93..587 17..511 2475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24061150..24061352 309..511 1015 100 Plus
2R 25286936 2R 24060812..24060993 127..308 910 100 Plus
2R 25286936 2R 24060675..24060749 53..127 375 100 Plus
2R 25286936 2R 24060538..24060574 17..53 185 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:27:22 has no hits.

BO12402.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:52 Download gff for BO12402.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL12-PC 1..498 17..515 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:16 Download gff for BO12402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3195-PC 1..498 17..515 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:49:14 Download gff for BO12402.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL12-RA 89..590 13..515 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:52 Download gff for BO12402.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL12-RA 89..590 13..515 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:52 Download gff for BO12402.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24060534..24060574 13..53 95 -> Plus
2R 24060676..24060749 54..127 100 -> Plus
2R 24060813..24060993 128..308 100 -> Plus
2R 24061150..24061355 309..515 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:49:14 Download gff for BO12402.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19948057..19948097 13..53 95 -> Plus
arm_2R 19948199..19948272 54..127 100 -> Plus
arm_2R 19948336..19948516 128..308 100 -> Plus
arm_2R 19948673..19948878 309..515 99   Plus

BO12402.3prime Sequence

527 bp (526 high quality bases) assembled on 2006-05-08

> BO12402.3prime
ATGGTCTAGAAAGCTTGCTTCCGCGGGGACTTCAATGGAGCCCTCGTTCA
GTTCGTCAATAACATCGTGAGGGTGCTTTCCGTCAACGGTGCAGCCGACG
CTCTGGGCGGTTCCCAGAACTTCCTTGCAGGTTCCCTTCAACTCACGGGC
CATGGACCTGGGCCTCATCACGCGGGCGATGGCCAGAATGTCTTCGAAGC
CAATGTTTCCACTGTGCTTGATGTTCTTCTGCTTCTTGCGGTCACGTGGG
GGTTCCTTCAGAGCCTTGATGATCAGCGAGGCGGCGGAGGGAACCACGGA
GATGGCGGCCTGTCGGTTCTGGATGGTCAGGCAGACGGTGATCTTCAGAC
CCTTCCAGTCGGAGGTGGCCTTGGCGATGTCATCACCGATTTTCTTGGGC
GACAGACCGAGGGGACCGATCTTTGGGGCCAGGGAGGATGTGGCACCGAC
TTCTCCGCCCACGCAACGCAGGTACACCAATTTAACTTCCGTTGGGTCGA
ATTTGGGAGGCATGTCGACTGATAACT

BO12402.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3195-PA 498 RpL12-RA 1..495 513..19 2475 100 Minus
CG3195-PB 498 RpL12-RB 1..495 513..19 2475 100 Minus
CG3195-PC 498 RpL12-RC 1..495 513..19 2475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpL12-RC 1095 CG3195-RC 93..587 513..19 2475 100 Minus
RpL12-RB 640 CG3195-RB 85..579 513..19 2475 100 Minus
RpL12-RA 648 CG3195-RA 93..587 513..19 2475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24061150..24061352 221..19 1015 100 Minus
2R 25286936 2R 24060812..24060993 403..222 910 100 Minus
2R 25286936 2R 24060675..24060749 477..403 375 100 Minus
2R 25286936 2R 24060538..24060574 513..477 185 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:33:11 has no hits.

BO12402.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:51 Download gff for BO12402.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL12-PC 1..498 15..513 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:15 Download gff for BO12402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3195-PC 1..498 15..513 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:19:41 Download gff for BO12402.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL12-RA 89..590 15..517 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:33 Download gff for BO12402.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL12-RA 89..590 15..517 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:33 Download gff for BO12402.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24060534..24060574 477..517 95 -> Minus
2R 24060676..24060749 403..476 100 -> Minus
2R 24060813..24060993 222..402 100 -> Minus
2R 24061150..24061355 15..221 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:19:41 Download gff for BO12402.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19948057..19948097 477..517 95 -> Minus
arm_2R 19948199..19948272 403..476 100 -> Minus
arm_2R 19948336..19948516 222..402 100 -> Minus
arm_2R 19948673..19948878 15..221 99   Minus

BO12402.complete Sequence

529 bp assembled on 2006-10-11

GenBank Submission: FJ638698

> BO12402.complete
GAAGTTATCAGTCGACATGCCTCCCAAATTCGACCCAACGGAAGTTAAAT
TGGTGTACCTGCGTTGCGTGGGCGGAGAAGTCGGTGCCACATCCTCCCTG
GCCCCAAAGATCGGTCCCCTCGGTCTGTCGCCCAAGAAAATCGGTGATGA
CATCGCCAAGGCCACCTCCGACTGGAAGGGTCTGAAGATCACCGTCTGCC
TGACCATCCAGAACCGACAGGCCGCCATCTCCGTGGTTCCCTCCGCCGCC
TCGCTGATCATCAAGGCTCTGAAGGAACCCCCACGTGACCGCAAGAAGCA
GAAGAACATCAAGCACAGTGGAAACATTGGCTTCGAAGACATTCTGGCCA
TCGCCCGCGTGATGAGGCCCAGGTCCATGGCCCGTGAGTTGAAGGGAACC
TGCAAGGAAGTTCTGGGAACCGCCCAGAGCGTCGGCTGCACCGTTGACGG
AAAGCACCCTCACGATGTTATTGACGAACTGAACGAGGGCTCCATTGAAG
TCCCCGCGGAAGCAAGCTTTCTAGACCAT

BO12402.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
RpL12-RC 498 CG3195-PC 1..495 17..511 2475 100 Plus
RpL12-RB 498 CG3195-PB 1..495 17..511 2475 100 Plus
RpL12-RA 498 CG3195-PA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpL12-RC 1095 CG3195-RC 93..587 17..511 2475 100 Plus
RpL12-RB 640 CG3195-RB 85..579 17..511 2475 100 Plus
RpL12-RA 648 CG3195-RA 93..587 17..511 2475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24061150..24061352 309..511 1015 100 Plus
2R 25286936 2R 24060812..24060993 127..308 910 100 Plus
2R 25286936 2R 24060675..24060749 53..127 375 100 Plus
2R 25286936 2R 24060538..24060574 17..53 185 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:37:33 has no hits.

BO12402.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:12 Download gff for BO12402.complete
Subject Subject Range Query Range Percent Splice Strand
RpL12-RC 1..498 17..515 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:32 Download gff for BO12402.complete
Subject Subject Range Query Range Percent Splice Strand
RpL12-RC 67..568 13..515 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:27 Download gff for BO12402.complete
Subject Subject Range Query Range Percent Splice Strand
RpL12-RA 93..587 17..513 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:12 Download gff for BO12402.complete
Subject Subject Range Query Range Percent Splice Strand
RpL12-RC 67..568 13..515 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:43 Download gff for BO12402.complete
Subject Subject Range Query Range Percent Splice Strand
RpL12-RA 93..587 17..513 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:43 Download gff for BO12402.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24060538..24060574 17..53 100 -> Plus
2R 24060676..24060749 54..127 100 -> Plus
2R 24060813..24060993 128..308 100 -> Plus
2R 24061150..24061352 309..513 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:27 Download gff for BO12402.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19948336..19948516 128..308 100 -> Plus
arm_2R 19948673..19948875 309..513 99   Plus
arm_2R 19948061..19948097 17..53 100 -> Plus
arm_2R 19948199..19948272 54..127 100 -> Plus

BO12402.pep Sequence

Translation from 16 to 529

> BO12402.pep
MPPKFDPTEVKLVYLRCVGGEVGATSSLAPKIGPLGLSPKKIGDDIAKAT
SDWKGLKITVCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKQKNIKH
SGNIGFEDILAIARVMRPRSMARELKGTCKEVLGTAQSVGCTVDGKHPHD
VIDELNEGSIEVPAEASFLDH

BO12402.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
RpL12-PC 165 CG3195-PC 1..165 1..165 846 100 Plus
RpL12-PB 165 CG3195-PB 1..165 1..165 846 100 Plus
RpL12-PA 165 CG3195-PA 1..165 1..165 846 100 Plus