Clone Sequence Records
BO12404.3prime Sequence
431 bp (430 high quality bases) assembled on 2006-05-08
> BO12404.3prime
ATGGTCTAGAAAGCTTGCGACCTCCTGCATTCGGTAGCAATCGGAGACGA
CCTTCCATTTATCATTCTCGGCGGTAACGATGAAAGTCTGCTGAAATTTG
CGTAACTGCTGATCTGCGAACTTGACGGAGCCGCTGGCCATGATGAGGTA
GGCCAGCTGGTTGGACACAGCCTGATCCACAATAGGCTGCGCGTCCAGGG
TGTTCAACTGGTGGTTTGAGGATGGCAGCTCCTGAAAGTAGCTCTCGATC
ATCTGGCGGCCGATGGCCCCGTTTCCATTCCAGCTAAGCGTAGCATTGTC
CAAATAGAGGCGTCCAATTTGTTGGCGTCGGTTGTCCACGGAGGCGTAGT
ACAGGCGTGTGAAGGTATCCGCCGTACGGGCGCAGCTCTCGACCTTGGCT
TTCAAATCGCTGTCCATGTCGACTGATAACT
BO12404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12752-PA | 402 | Nxt1-RA | 1..399 | 417..19 | 1995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nxt1-RA | 527 | CG12752-RA | 26..426 | 419..19 | 2005 | 100 | Minus |
| Nxt1-RB | 540 | CG12752-RB | 26..439 | 419..19 | 1865 | 96.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23811422..23811724 | 19..321 | 1515 | 100 | Plus |
| 2R | 25286936 | 2R | 23811795..23811881 | 322..408 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:16:32 has no hits.
BO12404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:55 Download gff for
BO12404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-PA | 1..402 | 16..417 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:20 Download gff for
BO12404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12752-PA | 1..402 | 16..417 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:58:09 Download gff for
BO12404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 26..426 | 19..419 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:03:17 Download gff for
BO12404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 26..426 | 19..419 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:03:17 Download gff for
BO12404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23811795..23811883 | 322..411 | 98 | | Plus |
| 2R | 23811422..23811724 | 19..321 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:58:09 Download gff for
BO12404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19698945..19699247 | 19..321 | 100 | <- | Plus |
| arm_2R | 19699318..19699406 | 322..411 | 98 | | Plus |
BO12404.5prime Sequence
431 bp (430 high quality bases) assembled on 2006-05-08
> BO12404.5prime
GAAGTTATCAGTCGACATGGACAGCGATTTGAAAGCCAAGGTCGAGAGCT
GCGCCCGTACGGCGGATACCTTCACACGCCTGTACTACGCCTCCGTGGAC
AACCGACGCCAACAAATTGGACGCCTCTATTTGGACAATGCTACGCTTAG
CTGGAATGGAAACGGGGCCATCGGCCGCCAGATGATCGAGAGCTACTTTC
AGGAGCTGCCATCCTCAAACCACCAGTTGAACACCCTGGACGCGCAGCCT
ATTGTGGATCAGGCTGTGTCCAACCAGCTGGCCTACCTCATCATGGCCAG
CGGCTCCGTCAAGTTCGCAGATCAGCAGTTACGCAAATTTCAGCAGACTT
TCATCGTTACCGCCGAGAATGATAAATGGAAGGTCGTCTCCGATTGCTAC
CGAATGCAGGAGGTCGCAAGCTTTCTAGACC
BO12404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12752-PA | 402 | Nxt1-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nxt1-RA | 527 | CG12752-RA | 26..426 | 15..415 | 2005 | 100 | Plus |
| Nxt1-RB | 540 | CG12752-RB | 26..439 | 15..415 | 1865 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23811422..23811724 | 415..113 | 1515 | 100 | Minus |
| 2R | 25286936 | 2R | 23811795..23811881 | 112..26 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:15:17 has no hits.
BO12404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:34:56 Download gff for
BO12404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-PA | 1..402 | 17..418 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:21 Download gff for
BO12404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12752-PA | 1..402 | 17..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:45:45 Download gff for
BO12404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 26..426 | 15..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:32 Download gff for
BO12404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 26..426 | 15..415 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:32 Download gff for
BO12404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23811422..23811724 | 113..415 | 100 | <- | Minus |
| 2R | 23811795..23811883 | 23..112 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:45 Download gff for
BO12404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19698945..19699247 | 113..415 | 100 | <- | Minus |
| arm_2R | 19699318..19699406 | 23..112 | 98 | | Minus |
BO12404.complete Sequence
433 bp assembled on 2006-10-11
GenBank Submission: FJ632434
> BO12404.complete
GAAGTTATCAGTCGACATGGACAGCGATTTGAAAGCCAAGGTCGAGAGCT
GCGCCCGTACGGCGGATACCTTCACACGCCTGTACTACGCCTCCGTGGAC
AACCGACGCCAACAAATTGGACGCCTCTATTTGGACAATGCTACGCTTAG
CTGGAATGGAAACGGGGCCATCGGCCGCCAGATGATCGAGAGCTACTTTC
AGGAGCTGCCATCCTCAAACCACCAGTTGAACACCCTGGACGCGCAGCCT
ATTGTGGATCAGGCTGTGTCCAACCAGCTGGCCTACCTCATCATGGCCAG
CGGCTCCGTCAAGTTCGCAGATCAGCAGTTACGCAAATTTCAGCAGACTT
TCATCGTTACCGCCGAGAATGATAAATGGAAGGTCGTCTCCGATTGCTAC
CGAATGCAGGAGGTCGCAAGCTTTCTAGACCAT
BO12404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nxt1-RA | 402 | CG12752-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
| Nxt1-RB | 147 | CG12752-PB | 1..147 | 17..150 | 505 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nxt1-RA | 527 | CG12752-RA | 26..426 | 15..415 | 2005 | 100 | Plus |
| Nxt1-RB | 540 | CG12752-RB | 26..439 | 15..415 | 1840 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23811422..23811724 | 415..113 | 1515 | 100 | Minus |
| 2R | 25286936 | 2R | 23811795..23811881 | 112..26 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:25:07 has no hits.
BO12404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:13 Download gff for
BO12404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 1..402 | 17..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:34 Download gff for
BO12404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 25..425 | 15..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:36 Download gff for
BO12404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 28..426 | 17..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:13 Download gff for
BO12404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 25..425 | 15..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:11 Download gff for
BO12404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nxt1-RA | 28..426 | 17..417 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:11 Download gff for
BO12404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23811419..23811724 | 113..417 | 99 | <- | Minus |
| 2R | 23811795..23811883 | 23..112 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:36 Download gff for
BO12404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19698942..19699247 | 113..417 | 99 | <- | Minus |
| arm_2R | 19699318..19699406 | 23..112 | 98 | | Minus |
BO12404.pep Sequence
Translation from 16 to 433
> BO12404.pep
MDSDLKAKVESCARTADTFTRLYYASVDNRRQQIGRLYLDNATLSWNGNG
AIGRQMIESYFQELPSSNHQLNTLDAQPIVDQAVSNQLAYLIMASGSVKF
ADQQLRKFQQTFIVTAENDKWKVVSDCYRMQEVASFLDH
BO12404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nxt1-PA | 133 | CG12752-PA | 1..133 | 1..133 | 683 | 100 | Plus |
| Nxt1-PB | 48 | CG12752-PB | 1..32 | 1..32 | 163 | 100 | Plus |
