Clone BO12412 Report

Search the DGRC for BO12412

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG13311-RA
Protein status:BO12412.pep: validated full length
Sequenced Size:493

Clone Sequence Records

BO12412.3prime Sequence

491 bp (490 high quality bases) assembled on 2006-05-08

> BO12412.3prime
ATGGTCTAGAAAGCTTGCTAGCGGACTGTCCCTATCGCATTCGACGGAAT
CACCCACTTCGCAGAGATCCACGCAGTATTTGCCCGATTTAATCGAGCAG
ATCTTGTTGTCCTTGCACTTGGTGACCTGGCCAGTTAGGTTGGTGCCATC
GCACATCTGGAAGGTGGTGCGACTGGTGCAGACGAACATGCTGTTTCCAT
CGCAGGTGGGGCAGGATCCATCGGCAGTGCCTGAGCAGGAGCTATCCACT
ACACTGCTGTCCATGCAGATGATTGCCAGGTCGGTGCAGACCTTGTTATC
CGGACACTGAAGGACCTGATTGGGCGCCACATTATCGGAGCAAAAGCTAT
AGTGCGTTTCATTCAGGCATTTCACATTGTTGGCTTGGCAACTGTTGCAC
ACTCCTTGGACCAGAACTGCCATCGAGCTTACAACCACAATGAGGCATAG
GTTTCTTAGGATTTGGGATTGCTGCATGTCGACTGATAACT

BO12412.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13311-PA 462 CG13311-RA 1..459 477..19 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13311-RA 568 CG13311-RA 37..495 477..19 2295 100 Minus
CG32023-RA 525 CG32023-RA 302..403 186..85 180 78.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8801613..8802041 19..447 2145 100 Plus
3L 28110227 3L 8803724..8803825 85..186 180 78.4 Plus
Blast to na_te.dros performed on 2015-02-12 18:56:40 has no hits.

BO12412.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:04 Download gff for BO12412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13311-PA 1..462 18..477 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:32 Download gff for BO12412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13311-PA 1..462 18..477 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:50:40 Download gff for BO12412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13311-RA 29..504 10..486 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:42:42 Download gff for BO12412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13311-RA 29..504 10..486 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:42:42 Download gff for BO12412.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8801608..8802041 13..447 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:50:40 Download gff for BO12412.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8794708..8795141 13..447 98 <- Plus

BO12412.5prime Sequence

491 bp (490 high quality bases) assembled on 2006-05-08

> BO12412.5prime
GAAGTTATCAGTCGACATGCAGCAATCCCAAATCCTAAGAAACCTATGCC
TCATTGTGGTTGTAAGCTCGATGGCAGTTCTGGTCCAAGGAGTGTGCAAC
AGTTGCCAAGCCAACAATGTGAAATGCCTGAATGAAACGCACTATAGCTT
TTGCTCCGATAATGTGGCGCCCAATCAGGTCCTTCAGTGTCCGGATAACA
AGGTCTGCACCGACCTGGCAATCATCTGCATGGACAGCAGTGTAGTGGAT
AGCTCCTGCTCAGGCACTGCCGATGGATCCTGCCCCACCTGCGATGGAAA
CAGCATGTTCGTCTGCACCAGTCGCACCACCTTCCAGATGTGCGATGGCA
CCAACCTAACTGGCCAGGTCACCAAGTGCAAGGACAACAAGATCTGCTCG
ATTAAATCGGGCAAATACTGCGTGGATCTCTGCGAAGTGGGTGATTCCGT
CGAATGCGATAGGGACAGTCCGCTAGCAAGCTTTCTAGACC

BO12412.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13311-PA 462 CG13311-RA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13311-RA 568 CG13311-RA 37..495 17..475 2295 100 Plus
CG32023-RA 525 CG32023-RA 302..403 308..409 180 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8801613..8802041 475..47 2145 100 Minus
3L 28110227 3L 8803724..8803825 409..308 180 78.4 Minus
Blast to na_te.dros performed on 2015-02-12 11:18:27 has no hits.

BO12412.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:05 Download gff for BO12412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13311-PA 1..462 17..476 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:33 Download gff for BO12412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13311-PA 1..462 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:45 Download gff for BO12412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13311-RA 29..504 8..484 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:52 Download gff for BO12412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13311-RA 29..504 8..484 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:52 Download gff for BO12412.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8801604..8802041 47..484 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:45 Download gff for BO12412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8794704..8795141 47..484 99 <- Minus

BO12412.complete Sequence

493 bp assembled on 2006-10-11

GenBank Submission: FJ632435

> BO12412.complete
GAAGTTATCAGTCGACATGCAGCAATCCCAAATCCTAAGAAACCTATGCC
TCATTGTGGTTGTAAGCTCGATGGCAGTTCTGGTCCAAGGAGTGTGCAAC
AGTTGCCAAGCCAACAATGTGAAATGCCTGAATGAAACGCACTATAGCTT
TTGCTCCGATAATGTGGCGCCCAATCAGGTCCTTCAGTGTCCGGATAACA
AGGTCTGCACCGACCTGGCAATCATCTGCATGGACAGCAGTGTAGTGGAT
AGCTCCTGCTCAGGCACTGCCGATGGATCCTGCCCCACCTGCGATGGAAA
CAGCATGTTCGTCTGCACCAGTCGCACCACCTTCCAGATGTGCGATGGCA
CCAACCTAACTGGCCAGGTCACCAAGTGCAAGGACAACAAGATCTGCTCG
ATTAAATCGGGCAAATACTGCGTGGATCTCTGCGAAGTGGGTGATTCCGT
CGAATGCGATAGGGACAGTCCGCTAGCAAGCTTTCTAGACCAT

BO12412.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13311-RA 462 CG13311-PA 1..459 17..475 2295 100 Plus
CG32023-RA 483 CG32023-PA 298..399 308..409 180 78.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13311-RA 568 CG13311-RA 37..495 17..475 2295 100 Plus
CG32023-RA 525 CG32023-RA 302..403 308..409 180 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8801613..8802041 475..47 2145 100 Minus
3L 28110227 3L 8803724..8803825 409..308 180 78.4 Minus
Blast to na_te.dros performed on 2014-11-27 17:02:47 has no hits.

BO12412.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:13 Download gff for BO12412.complete
Subject Subject Range Query Range Percent Splice Strand
CG13311-RA 1..462 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:35 Download gff for BO12412.complete
Subject Subject Range Query Range Percent Splice Strand
CG13311-RA 27..502 8..484 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:35 Download gff for BO12412.complete
Subject Subject Range Query Range Percent Splice Strand
CG13311-RA 37..495 17..477 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:14 Download gff for BO12412.complete
Subject Subject Range Query Range Percent Splice Strand
CG13311-RA 27..502 8..484 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:14 Download gff for BO12412.complete
Subject Subject Range Query Range Percent Splice Strand
CG13311-RA 37..495 17..477 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:14 Download gff for BO12412.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8801611..8802041 47..477 99 <- Minus
3L 8802099..8802128 17..46 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:35 Download gff for BO12412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8794711..8795141 47..477 99 <- Minus
arm_3L 8795199..8795228 17..46 100   Minus

BO12412.pep Sequence

Translation from 16 to 493

> BO12412.pep
MQQSQILRNLCLIVVVSSMAVLVQGVCNSCQANNVKCLNETHYSFCSDNV
APNQVLQCPDNKVCTDLAIICMDSSVVDSSCSGTADGSCPTCDGNSMFVC
TSRTTFQMCDGTNLTGQVTKCKDNKICSIKSGKYCVDLCEVGDSVECDRD
SPLASFLDH

BO12412.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13311-PA 153 CG13311-PA 1..153 1..153 831 100 Plus
CG32023-PA 160 CG32023-PA 1..158 1..153 491 59.5 Plus
CG14958-PA 145 CG14958-PA 5..142 10..147 231 37.5 Plus
CG34426-PA 296 CG34426-PA 2..144 12..149 214 32.2 Plus
CG13309-PA 229 CG13309-PA 2..143 10..148 203 32.2 Plus