Clone Sequence Records
BO12412.3prime Sequence
491 bp (490 high quality bases) assembled on 2006-05-08
> BO12412.3prime
ATGGTCTAGAAAGCTTGCTAGCGGACTGTCCCTATCGCATTCGACGGAAT
CACCCACTTCGCAGAGATCCACGCAGTATTTGCCCGATTTAATCGAGCAG
ATCTTGTTGTCCTTGCACTTGGTGACCTGGCCAGTTAGGTTGGTGCCATC
GCACATCTGGAAGGTGGTGCGACTGGTGCAGACGAACATGCTGTTTCCAT
CGCAGGTGGGGCAGGATCCATCGGCAGTGCCTGAGCAGGAGCTATCCACT
ACACTGCTGTCCATGCAGATGATTGCCAGGTCGGTGCAGACCTTGTTATC
CGGACACTGAAGGACCTGATTGGGCGCCACATTATCGGAGCAAAAGCTAT
AGTGCGTTTCATTCAGGCATTTCACATTGTTGGCTTGGCAACTGTTGCAC
ACTCCTTGGACCAGAACTGCCATCGAGCTTACAACCACAATGAGGCATAG
GTTTCTTAGGATTTGGGATTGCTGCATGTCGACTGATAACT
BO12412.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13311-PA | 462 | CG13311-RA | 1..459 | 477..19 | 2295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13311-RA | 568 | CG13311-RA | 37..495 | 477..19 | 2295 | 100 | Minus |
CG32023-RA | 525 | CG32023-RA | 302..403 | 186..85 | 180 | 78.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8801613..8802041 | 19..447 | 2145 | 100 | Plus |
3L | 28110227 | 3L | 8803724..8803825 | 85..186 | 180 | 78.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:56:40 has no hits.
BO12412.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:04 Download gff for
BO12412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-PA | 1..462 | 18..477 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:32 Download gff for
BO12412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-PA | 1..462 | 18..477 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:50:40 Download gff for
BO12412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-RA | 29..504 | 10..486 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:42:42 Download gff for
BO12412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-RA | 29..504 | 10..486 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:42:42 Download gff for
BO12412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8801608..8802041 | 13..447 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:50:40 Download gff for
BO12412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8794708..8795141 | 13..447 | 98 | <- | Plus |
BO12412.5prime Sequence
491 bp (490 high quality bases) assembled on 2006-05-08
> BO12412.5prime
GAAGTTATCAGTCGACATGCAGCAATCCCAAATCCTAAGAAACCTATGCC
TCATTGTGGTTGTAAGCTCGATGGCAGTTCTGGTCCAAGGAGTGTGCAAC
AGTTGCCAAGCCAACAATGTGAAATGCCTGAATGAAACGCACTATAGCTT
TTGCTCCGATAATGTGGCGCCCAATCAGGTCCTTCAGTGTCCGGATAACA
AGGTCTGCACCGACCTGGCAATCATCTGCATGGACAGCAGTGTAGTGGAT
AGCTCCTGCTCAGGCACTGCCGATGGATCCTGCCCCACCTGCGATGGAAA
CAGCATGTTCGTCTGCACCAGTCGCACCACCTTCCAGATGTGCGATGGCA
CCAACCTAACTGGCCAGGTCACCAAGTGCAAGGACAACAAGATCTGCTCG
ATTAAATCGGGCAAATACTGCGTGGATCTCTGCGAAGTGGGTGATTCCGT
CGAATGCGATAGGGACAGTCCGCTAGCAAGCTTTCTAGACC
BO12412.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13311-PA | 462 | CG13311-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13311-RA | 568 | CG13311-RA | 37..495 | 17..475 | 2295 | 100 | Plus |
CG32023-RA | 525 | CG32023-RA | 302..403 | 308..409 | 180 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8801613..8802041 | 475..47 | 2145 | 100 | Minus |
3L | 28110227 | 3L | 8803724..8803825 | 409..308 | 180 | 78.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:18:27 has no hits.
BO12412.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:05 Download gff for
BO12412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-PA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:33 Download gff for
BO12412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-PA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:45 Download gff for
BO12412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-RA | 29..504 | 8..484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:52 Download gff for
BO12412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-RA | 29..504 | 8..484 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:52 Download gff for
BO12412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8801604..8802041 | 47..484 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:45 Download gff for
BO12412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8794704..8795141 | 47..484 | 99 | <- | Minus |
BO12412.complete Sequence
493 bp assembled on 2006-10-11
GenBank Submission: FJ632435
> BO12412.complete
GAAGTTATCAGTCGACATGCAGCAATCCCAAATCCTAAGAAACCTATGCC
TCATTGTGGTTGTAAGCTCGATGGCAGTTCTGGTCCAAGGAGTGTGCAAC
AGTTGCCAAGCCAACAATGTGAAATGCCTGAATGAAACGCACTATAGCTT
TTGCTCCGATAATGTGGCGCCCAATCAGGTCCTTCAGTGTCCGGATAACA
AGGTCTGCACCGACCTGGCAATCATCTGCATGGACAGCAGTGTAGTGGAT
AGCTCCTGCTCAGGCACTGCCGATGGATCCTGCCCCACCTGCGATGGAAA
CAGCATGTTCGTCTGCACCAGTCGCACCACCTTCCAGATGTGCGATGGCA
CCAACCTAACTGGCCAGGTCACCAAGTGCAAGGACAACAAGATCTGCTCG
ATTAAATCGGGCAAATACTGCGTGGATCTCTGCGAAGTGGGTGATTCCGT
CGAATGCGATAGGGACAGTCCGCTAGCAAGCTTTCTAGACCAT
BO12412.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13311-RA | 462 | CG13311-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
CG32023-RA | 483 | CG32023-PA | 298..399 | 308..409 | 180 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13311-RA | 568 | CG13311-RA | 37..495 | 17..475 | 2295 | 100 | Plus |
CG32023-RA | 525 | CG32023-RA | 302..403 | 308..409 | 180 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8801613..8802041 | 475..47 | 2145 | 100 | Minus |
3L | 28110227 | 3L | 8803724..8803825 | 409..308 | 180 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:02:47 has no hits.
BO12412.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:13 Download gff for
BO12412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-RA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:35 Download gff for
BO12412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-RA | 27..502 | 8..484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:35 Download gff for
BO12412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-RA | 37..495 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:14 Download gff for
BO12412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-RA | 27..502 | 8..484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:14 Download gff for
BO12412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13311-RA | 37..495 | 17..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:14 Download gff for
BO12412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8801611..8802041 | 47..477 | 99 | <- | Minus |
3L | 8802099..8802128 | 17..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:35 Download gff for
BO12412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8794711..8795141 | 47..477 | 99 | <- | Minus |
arm_3L | 8795199..8795228 | 17..46 | 100 | | Minus |
BO12412.pep Sequence
Translation from 16 to 493
> BO12412.pep
MQQSQILRNLCLIVVVSSMAVLVQGVCNSCQANNVKCLNETHYSFCSDNV
APNQVLQCPDNKVCTDLAIICMDSSVVDSSCSGTADGSCPTCDGNSMFVC
TSRTTFQMCDGTNLTGQVTKCKDNKICSIKSGKYCVDLCEVGDSVECDRD
SPLASFLDH
BO12412.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13311-PA | 153 | CG13311-PA | 1..153 | 1..153 | 831 | 100 | Plus |
CG32023-PA | 160 | CG32023-PA | 1..158 | 1..153 | 491 | 59.5 | Plus |
CG14958-PA | 145 | CG14958-PA | 5..142 | 10..147 | 231 | 37.5 | Plus |
CG34426-PA | 296 | CG34426-PA | 2..144 | 12..149 | 214 | 32.2 | Plus |
CG13309-PA | 229 | CG13309-PA | 2..143 | 10..148 | 203 | 32.2 | Plus |