Clone BO12413 Report

Search the DGRC for BO12413

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptTsp74F-RA
Protein status:BO12413.pep: validated full length
Sequenced Size:742

Clone Sequence Records

BO12413.5prime Sequence

740 bp (739 high quality bases) assembled on 2006-05-08

> BO12413.5prime
GAAGTTATCAGTCGACATGGGCTTCAGTTCGCGAATGGACTGCTGCGGGC
AGTTCGTCAAGTACAGTCTTTTCATAGCCAACTTTGTGATATTCGTGGGT
GGAGCGATTGTGTTTTGTCTCACCCTGTGGACTCTGGTGGATCGGAGTTT
CGTCAATGAGTTGCTCGGTACAAATCTTTTCTCGGGTGCTGTCTACGTCC
TGCTGGTTACATCGATTATCATTTGTCTGGTGTCCTTTTTGGGTTGTGTT
GGTGCCGGAAAAGAAGTCAAATGCCTCCTCCTAACATATTTCATAATAGT
GGCCCTAGTTTTCGTGACCATGCTAATTGGCGGTGTCTTGGGTTACGTGT
TCCGCGAACGAGTTCAGCAGACCATGCGGCAGGAAATGCGTTCCACGATG
GCACTATACGGAAGCAGGAGGGAGATCACCCAGGCCTGGGATTTGACCCA
GGAGCGACTACAGTGCTGCGGAGTGGATACGTGGCACGACTGGAATAGGT
ACGGACCAGTGCCTGAGTCCTGTTGCCAGGAGCTTTTCGGTGGACAGCGT
AAGGAGTGCACAATCTTCCCGACCATTACGAATCTGTACAACCAGGGATG
CCTCTATGTGACGACCAACTTCATCAGGGATCACGCGGCGGTTATTGGAG
GTACATCCATAGCGGTGGCCATACTGATGATCTTTGGCATGATATTCTCC
TGTCTACTATTCAATATGATCGAAGCAAGCTTTCTAGACC

BO12413.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5492-PA 711 Tsp74F-RA 1..708 17..724 3540 100 Plus
CG5492-PB 711 Tsp74F-RB 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp74F-RB 1519 CG5492-RB 390..1101 13..724 3545 99.9 Plus
Tsp74F-RA 1414 CG5492-RA 285..996 13..724 3545 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17892357..17892655 679..381 1495 100 Minus
3L 28110227 3L 17893031..17893222 286..95 960 100 Minus
3L 28110227 3L 17892716..17892812 383..287 485 100 Minus
3L 28110227 3L 17893297..17893381 97..13 410 98.8 Minus
3L 28110227 3L 17892238..17892283 724..679 230 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:26:05 has no hits.

BO12413.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:06 Download gff for BO12413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5492-PA 1..711 17..725 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:34 Download gff for BO12413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5492-PB 1..711 17..725 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:49:02 Download gff for BO12413.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RA 282..1000 10..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:00 Download gff for BO12413.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RA 282..1000 10..730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:00 Download gff for BO12413.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17892234..17892282 680..730 94 <- Minus
3L 17892357..17892653 383..679 100 <- Minus
3L 17892717..17892812 287..382 100 <- Minus
3L 17893031..17893222 95..286 100 <- Minus
3L 17893300..17893384 10..94 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:49:02 Download gff for BO12413.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17885334..17885382 680..730 94 <- Minus
arm_3L 17885457..17885753 383..679 100 <- Minus
arm_3L 17885817..17885912 287..382 100 <- Minus
arm_3L 17886131..17886322 95..286 100 <- Minus
arm_3L 17886400..17886484 10..94 97   Minus

BO12413.complete Sequence

742 bp assembled on 2007-10-29

GenBank Submission: FJ632436

> BO12413.complete
GAAGTTATCAGTCGACATGGGCTTCAGTTCGCGAATGGACTGCTGCGGGC
AGTTCGTCAAGTACAGTCTTTTCATAGCCAACTTTGTGATATTCGTGGGT
GGAGCGATTGTGTTTTGTCTCACCCTGTGGACTCTGGTGGATCGGAGTTT
CGTCAATGAGTTGCTCGGTACAAATCTTTTCTCGGGTGCTGTCTACGTCC
TGCTGGTTACATCGATTATCATTTGTCTGGTGTCCTTTTTGGGTTGTGTT
GGTGCCGGAAAAGAAGTCAAATGCCTCCTCCTAACATATTTCATAATAGT
GGCCCTAGTTTTCGTGACCATGCTAATTGGCGGTGTCTTGGGTTACGTGT
TCCGCGAACGAGTTCAGCAGACCATGCGGCAGGAAATGCGTTCCACGATG
GCACTATACGGAAGCAGGAGGGAGATCACCCAGGCCTGGGATTTGACCCA
GGAGCGACTACAGTGCTGCGGAGTGGATACGTGGCACGACTGGAATAGGT
ACGGACCAGTGCCTGAGTCCTGTTGCCAGGAGCTTTTCGGTGGACAGCGT
AAGGAGTGCACAATCTTCCCGACCATTACGAATCTGTACAACCAGGGATG
CCTCTATGTGACGACCAACTTCATCAGGGATCACGCGGCGGTTATTGGAG
GTACATCCATAGCGGTGGCCATACTGATGATCTTTGGCATGATATTCTCC
TGTCTACTATTCAATATGATCGAAGCAAGCTTTCTAGACCAT

BO12413.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp74F-RB 711 CG5492-PB 1..708 17..724 3540 100 Plus
Tsp74F-RA 711 CG5492-PA 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp74F-RB 1519 CG5492-RB 390..1101 13..724 3545 99.9 Plus
Tsp74F-RA 1414 CG5492-RA 285..996 13..724 3545 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17892357..17892655 679..381 1495 100 Minus
3L 28110227 3L 17893031..17893222 286..95 960 100 Minus
3L 28110227 3L 17892716..17892812 383..287 485 100 Minus
3L 28110227 3L 17893297..17893381 97..13 410 98.8 Minus
3L 28110227 3L 17892238..17892283 724..679 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:38:55 has no hits.

BO12413.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:30 Download gff for BO12413.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RB 1..711 17..725 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:41 Download gff for BO12413.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RB 379..1097 10..730 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:33 Download gff for BO12413.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RA 289..996 17..726 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:57 Download gff for BO12413.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RB 386..1093 17..726 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:52 Download gff for BO12413.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp74F-RA 289..996 17..726 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:52 Download gff for BO12413.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17892717..17892812 287..382 100 <- Minus
3L 17893031..17893222 95..286 100 <- Minus
3L 17893300..17893377 17..94 100   Minus
3L 17892234..17892282 680..726 95 <- Minus
3L 17892357..17892653 383..679 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:33 Download gff for BO12413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17885334..17885382 680..726 95 <- Minus
arm_3L 17885457..17885753 383..679 100 <- Minus
arm_3L 17885817..17885912 287..382 100 <- Minus
arm_3L 17886131..17886322 95..286 100 <- Minus
arm_3L 17886400..17886477 17..94 100   Minus

BO12413.pep Sequence

Translation from 16 to 742

> BO12413.pep
MGFSSRMDCCGQFVKYSLFIANFVIFVGGAIVFCLTLWTLVDRSFVNELL
GTNLFSGAVYVLLVTSIIICLVSFLGCVGAGKEVKCLLLTYFIIVALVFV
TMLIGGVLGYVFRERVQQTMRQEMRSTMALYGSRREITQAWDLTQERLQC
CGVDTWHDWNRYGPVPESCCQELFGGQRKECTIFPTITNLYNQGCLYVTT
NFIRDHAAVIGGTSIAVAILMIFGMIFSCLLFNMIEASFLDH

BO12413.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp74F-PB 236 CG5492-PB 1..236 1..236 1246 100 Plus
Tsp74F-PA 236 CG5492-PA 1..236 1..236 1246 100 Plus
Tsp29Fa-PC 248 CG9494-PC 11..239 14..236 289 29.6 Plus
Tsp29Fa-PB 248 CG9494-PB 11..239 14..236 289 29.6 Plus
Tsp29Fa-PA 248 CG9494-PA 11..239 14..236 289 29.6 Plus