Clone Sequence Records
BO12413.5prime Sequence
740 bp (739 high quality bases) assembled on 2006-05-08
> BO12413.5prime
GAAGTTATCAGTCGACATGGGCTTCAGTTCGCGAATGGACTGCTGCGGGC
AGTTCGTCAAGTACAGTCTTTTCATAGCCAACTTTGTGATATTCGTGGGT
GGAGCGATTGTGTTTTGTCTCACCCTGTGGACTCTGGTGGATCGGAGTTT
CGTCAATGAGTTGCTCGGTACAAATCTTTTCTCGGGTGCTGTCTACGTCC
TGCTGGTTACATCGATTATCATTTGTCTGGTGTCCTTTTTGGGTTGTGTT
GGTGCCGGAAAAGAAGTCAAATGCCTCCTCCTAACATATTTCATAATAGT
GGCCCTAGTTTTCGTGACCATGCTAATTGGCGGTGTCTTGGGTTACGTGT
TCCGCGAACGAGTTCAGCAGACCATGCGGCAGGAAATGCGTTCCACGATG
GCACTATACGGAAGCAGGAGGGAGATCACCCAGGCCTGGGATTTGACCCA
GGAGCGACTACAGTGCTGCGGAGTGGATACGTGGCACGACTGGAATAGGT
ACGGACCAGTGCCTGAGTCCTGTTGCCAGGAGCTTTTCGGTGGACAGCGT
AAGGAGTGCACAATCTTCCCGACCATTACGAATCTGTACAACCAGGGATG
CCTCTATGTGACGACCAACTTCATCAGGGATCACGCGGCGGTTATTGGAG
GTACATCCATAGCGGTGGCCATACTGATGATCTTTGGCATGATATTCTCC
TGTCTACTATTCAATATGATCGAAGCAAGCTTTCTAGACC
BO12413.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5492-PA | 711 | Tsp74F-RA | 1..708 | 17..724 | 3540 | 100 | Plus |
CG5492-PB | 711 | Tsp74F-RB | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp74F-RB | 1519 | CG5492-RB | 390..1101 | 13..724 | 3545 | 99.9 | Plus |
Tsp74F-RA | 1414 | CG5492-RA | 285..996 | 13..724 | 3545 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17892357..17892655 | 679..381 | 1495 | 100 | Minus |
3L | 28110227 | 3L | 17893031..17893222 | 286..95 | 960 | 100 | Minus |
3L | 28110227 | 3L | 17892716..17892812 | 383..287 | 485 | 100 | Minus |
3L | 28110227 | 3L | 17893297..17893381 | 97..13 | 410 | 98.8 | Minus |
3L | 28110227 | 3L | 17892238..17892283 | 724..679 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:26:05 has no hits.
BO12413.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:06 Download gff for
BO12413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5492-PA | 1..711 | 17..725 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:34 Download gff for
BO12413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5492-PB | 1..711 | 17..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:49:02 Download gff for
BO12413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RA | 282..1000 | 10..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:00 Download gff for
BO12413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RA | 282..1000 | 10..730 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:00 Download gff for
BO12413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17892234..17892282 | 680..730 | 94 | <- | Minus |
3L | 17892357..17892653 | 383..679 | 100 | <- | Minus |
3L | 17892717..17892812 | 287..382 | 100 | <- | Minus |
3L | 17893031..17893222 | 95..286 | 100 | <- | Minus |
3L | 17893300..17893384 | 10..94 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:49:02 Download gff for
BO12413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17885334..17885382 | 680..730 | 94 | <- | Minus |
arm_3L | 17885457..17885753 | 383..679 | 100 | <- | Minus |
arm_3L | 17885817..17885912 | 287..382 | 100 | <- | Minus |
arm_3L | 17886131..17886322 | 95..286 | 100 | <- | Minus |
arm_3L | 17886400..17886484 | 10..94 | 97 | | Minus |
BO12413.complete Sequence
742 bp assembled on 2007-10-29
GenBank Submission: FJ632436
> BO12413.complete
GAAGTTATCAGTCGACATGGGCTTCAGTTCGCGAATGGACTGCTGCGGGC
AGTTCGTCAAGTACAGTCTTTTCATAGCCAACTTTGTGATATTCGTGGGT
GGAGCGATTGTGTTTTGTCTCACCCTGTGGACTCTGGTGGATCGGAGTTT
CGTCAATGAGTTGCTCGGTACAAATCTTTTCTCGGGTGCTGTCTACGTCC
TGCTGGTTACATCGATTATCATTTGTCTGGTGTCCTTTTTGGGTTGTGTT
GGTGCCGGAAAAGAAGTCAAATGCCTCCTCCTAACATATTTCATAATAGT
GGCCCTAGTTTTCGTGACCATGCTAATTGGCGGTGTCTTGGGTTACGTGT
TCCGCGAACGAGTTCAGCAGACCATGCGGCAGGAAATGCGTTCCACGATG
GCACTATACGGAAGCAGGAGGGAGATCACCCAGGCCTGGGATTTGACCCA
GGAGCGACTACAGTGCTGCGGAGTGGATACGTGGCACGACTGGAATAGGT
ACGGACCAGTGCCTGAGTCCTGTTGCCAGGAGCTTTTCGGTGGACAGCGT
AAGGAGTGCACAATCTTCCCGACCATTACGAATCTGTACAACCAGGGATG
CCTCTATGTGACGACCAACTTCATCAGGGATCACGCGGCGGTTATTGGAG
GTACATCCATAGCGGTGGCCATACTGATGATCTTTGGCATGATATTCTCC
TGTCTACTATTCAATATGATCGAAGCAAGCTTTCTAGACCAT
BO12413.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp74F-RB | 711 | CG5492-PB | 1..708 | 17..724 | 3540 | 100 | Plus |
Tsp74F-RA | 711 | CG5492-PA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp74F-RB | 1519 | CG5492-RB | 390..1101 | 13..724 | 3545 | 99.9 | Plus |
Tsp74F-RA | 1414 | CG5492-RA | 285..996 | 13..724 | 3545 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17892357..17892655 | 679..381 | 1495 | 100 | Minus |
3L | 28110227 | 3L | 17893031..17893222 | 286..95 | 960 | 100 | Minus |
3L | 28110227 | 3L | 17892716..17892812 | 383..287 | 485 | 100 | Minus |
3L | 28110227 | 3L | 17893297..17893381 | 97..13 | 410 | 98.8 | Minus |
3L | 28110227 | 3L | 17892238..17892283 | 724..679 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:38:55 has no hits.
BO12413.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:30 Download gff for
BO12413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RB | 1..711 | 17..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:41 Download gff for
BO12413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RB | 379..1097 | 10..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:33 Download gff for
BO12413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RA | 289..996 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:57 Download gff for
BO12413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RB | 386..1093 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:52 Download gff for
BO12413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp74F-RA | 289..996 | 17..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:52 Download gff for
BO12413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17892717..17892812 | 287..382 | 100 | <- | Minus |
3L | 17893031..17893222 | 95..286 | 100 | <- | Minus |
3L | 17893300..17893377 | 17..94 | 100 | | Minus |
3L | 17892234..17892282 | 680..726 | 95 | <- | Minus |
3L | 17892357..17892653 | 383..679 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:33 Download gff for
BO12413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17885334..17885382 | 680..726 | 95 | <- | Minus |
arm_3L | 17885457..17885753 | 383..679 | 100 | <- | Minus |
arm_3L | 17885817..17885912 | 287..382 | 100 | <- | Minus |
arm_3L | 17886131..17886322 | 95..286 | 100 | <- | Minus |
arm_3L | 17886400..17886477 | 17..94 | 100 | | Minus |
BO12413.pep Sequence
Translation from 16 to 742
> BO12413.pep
MGFSSRMDCCGQFVKYSLFIANFVIFVGGAIVFCLTLWTLVDRSFVNELL
GTNLFSGAVYVLLVTSIIICLVSFLGCVGAGKEVKCLLLTYFIIVALVFV
TMLIGGVLGYVFRERVQQTMRQEMRSTMALYGSRREITQAWDLTQERLQC
CGVDTWHDWNRYGPVPESCCQELFGGQRKECTIFPTITNLYNQGCLYVTT
NFIRDHAAVIGGTSIAVAILMIFGMIFSCLLFNMIEASFLDH
BO12413.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp74F-PB | 236 | CG5492-PB | 1..236 | 1..236 | 1246 | 100 | Plus |
Tsp74F-PA | 236 | CG5492-PA | 1..236 | 1..236 | 1246 | 100 | Plus |
Tsp29Fa-PC | 248 | CG9494-PC | 11..239 | 14..236 | 289 | 29.6 | Plus |
Tsp29Fa-PB | 248 | CG9494-PB | 11..239 | 14..236 | 289 | 29.6 | Plus |
Tsp29Fa-PA | 248 | CG9494-PA | 11..239 | 14..236 | 289 | 29.6 | Plus |