Clone Sequence Records
BO12422.3prime Sequence
910 bp (829 high quality bases) assembled on 2006-05-08
> BO12422.3prime
ATGGTCTAGAAAGCTTGCGACAAACAATGATTTGTACAACTCGGACTTGG
AGGCATCCGTCCAGTCGCTACTCTCATTGGGCGCCATGAAGTTGATGAGC
TTGTTGTGCACCACGTATCGCAGCTTTCGCCCCTTGCTGGCCCTGGTGTC
CACCTTCTTCTTCATCTTCTGGCGCAGCTTCTGTAGCTCCACGAACTGCT
TGGTAATCTCGCTCATGTTGGACGAGGTGCTGGCCTTGTACTCGATGAGC
TCCCGCAGCTGCTGGTGGTAGAAATCGCTGTCGTCGTAGATGTGCTTCAA
TCGCTGCACGGGCGTGTTTTCCTGCTGCTCCGCCTGGCTGTTCTTTGGGG
TCTGGGACTTTTCCACGAGCGCCTCTCGGTTCGCCAGGGCGCTGCCGATC
TTTTTGATGATGTCGTAGTCCTCCTGCAAGGACTTGCGTTTGACACCCGC
TCCGGGGGTCAGGAGTTTCGTACGGTCGTCCCACTTTAACAGAACTTCAT
TGCGATACCCAATCATTTGTTGGAAATTGCTCTGCAGCACAGAACCAAAC
TTTTTGACCGCCGGACCCGAATCCTCTGTGGGCTGCTTGCGCTTCACCGA
CTTTTTCATCTCGGAGTATTGCTGGTGGAGAGCTGACTGGAGGGAGAGCA
GTTGCTGCAGTAGCTTGGATGAACGCTCCTGGGCCTCGTTAAGCACCGAC
TGAAGCTCATCGCTTTCCGATGCCAGTTTCGTTAGAGTTTCCGGTGCAGG
AAGCTGATTCGCTTTGCTGGTGAACTTTTGGGTGTTGATCCTTAGCTCGA
GAAGACGCTCCCAGATGCGCAGCTGGTTTTGGACGGCAAGTCCTTTTTGG
ATTTCAGCTTGATGGTTGGTTTTGGACATTACATCCGAGGGTTTGATTGC
GTCGTCTTCT
BO12422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11188-PA | 1467 | CG11188-RA | 573..1464 | 910..19 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aatf-RA | 1703 | CG11188-RA | 659..1550 | 910..19 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6718283..6719081 | 910..112 | 3980 | 99.9 | Minus |
| 2L | 23513712 | 2L | 6719136..6719236 | 119..19 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:43:23 has no hits.
BO12422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:23 Download gff for
BO12422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11188-PA | 573..1467 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:58 Download gff for
BO12422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11188-PA | 573..1467 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:26:06 Download gff for
BO12422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11188-RA | 659..1550 | 19..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:17:50 Download gff for
BO12422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aatf-RA | 659..1550 | 19..910 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:17:50 Download gff for
BO12422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6718283..6719074 | 119..910 | 100 | -> | Minus |
| 2L | 6719137..6719236 | 19..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:26:06 Download gff for
BO12422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6718283..6719074 | 119..910 | 100 | -> | Minus |
| arm_2L | 6719137..6719236 | 19..118 | 100 | | Minus |
BO12422.5prime Sequence
901 bp (829 high quality bases) assembled on 2006-05-08
> BO12422.5prime
GAAGTTATCAGTCGACATGCTGCGCAAGTCAAAGAAACAGCCACAGACGG
TGGCCGAGAAGGTCAGCAAGCTGCTTGCCCATCCGAACGAGAGCGACAGC
GCAGAGGACTCGGACTTCGATGTGGCCACAGGGCCACGTCTGGTGGACTT
CGAGGAGGAGGAGTACGACCTGCCGGATGCCCGGAGCACCGACTTTAGGA
AGAGGAACGTCAAGCTGCTCTCGGAGCAGAGTGACCGCTACAAAGGAAAG
ATCAGCAGTCGCAAGGAGTTGGATGACGATGAGGATAAGGATGATGAACA
AGAGGTGTCCTACGAAGAAAGCGATGAGGATGATGAGAACTTGACAAACT
TTAAGCAGAAGTTAAATGCTGGAGGAGCTGAAGACTCCGAGGAGGAAACG
GCTGCTGGACATTCCGAATCTGGTGAAGAAAGTGAGGAGATTGAGAGCAA
TTTGACAGACTTTAAAAAAAAGTTTGAGGCTGGAGATTTTAAGTATGATG
ATGATGAGGAGGAGGATGATGACTCTGAGGAAGAAGACCATAGCCAGGAA
AGTGAAGGAGATGACGACGATTCAGAAGATGATGAAGCAGAAGACGACGC
AATCAAACCCTCGGATGTAATGTCCAAAACCAACCATCAAGCTGAAATCC
AAAAAGGACTTGCCGTCCAAAACCAGCTGCGCATCTGGGAGCGTCTTCTC
GAGCTAAGGATCAACACCCAAAAGTTCACCAGCAAAGCGAATCAGCTTCC
TGCACCGGAAACTCTAACGAAACTGGCATCGGAAAGCGATGAGCTTCAGT
CGGTGCTTAACGAGGCCCAGGAGCGTTCATCCAAGCTACTGCAGCAACTG
CTCTCCCTCCAGTCAGCTCTCCACCAGCAATACTCCGAGATGAAAAAGTC
G
BO12422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11188-PA | 1467 | CG11188-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aatf-RA | 1703 | CG11188-RA | 87..971 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6717711..6718595 | 17..901 | 4425 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 13:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Circe | 7450 | Circe CIRC 7450bp | 2159..2207 | 501..549 | 110 | 69.4 | Plus |
BO12422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:24 Download gff for
BO12422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11188-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:00 Download gff for
BO12422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11188-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:17:09 Download gff for
BO12422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11188-RA | 83..971 | 9..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:41 Download gff for
BO12422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aatf-RA | 83..971 | 9..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:41 Download gff for
BO12422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6717707..6718595 | 9..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:17:09 Download gff for
BO12422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6717707..6718595 | 9..901 | 99 | | Plus |
BO12422.complete Sequence
1498 bp assembled on 2006-10-11
GenBank Submission: FJ632437
> BO12422.complete
GAAGTTATCAGTCGACATGCTGCGCAAGTCAAAGAAACAGCCACAGACGG
TGGCCGAGAAGGTCAGCAAGCTGCTTGCCCATCCGAACGAGAGCGACAGC
GCAGAGGACTCGGACTTCGATGTGGCCACAGGGCCACGTCTGGTGGACTT
CGAGGAGGAGGAGTACGACCTGCCGGATGCCCGGAGCACCGACTTTAGGA
AGAGGAACGTCAAGCTGCTCTCGGAGCAGAGTGACCGCTACAAAGGAAAG
ATCAGCAGTCGCAAGGAGTTGGATGACGATGAGGATAAGGATGATGAACA
AGAGGTGTCCTACGAAGAAAGCGATGAGGATGATGAGAACTTGACAAACT
TTAAGCAGAAGTTAAATGCTGGAGGAGCTGAAGACTCCGAGGAGGAAACG
GCTGCTGGACATTCCGAATCTGGTGAAGAAAGTGAGGAGATTGAGAGCAA
TTTGACAGACTTTAAAAAAAAGTTTGAGGCTGGAGATTTTAAGTATGATG
ATGATGAGGAGGAGGATGATGACTCTGAGGAAGAAGACCATAGCCAGGAA
AGTGAAGGAGATGACGACGATTCAGAAGATGATGAAGCAGAAGACGACGC
AATCAAACCCTCGGATGTAATGTCCAAAACCAACCATCAAGCTGAAATCC
AAAAAGGACTTGCCGTCCAAAACCAGCTGCGCATCTGGGAGCGTCTTCTC
GAGCTAAGGATCAACACCCAAAAGTTCACCAGCAAAGCGAATCAGCTTCC
TGCACCGGAAACTCTAACGAAACTGGCATCGGAAAGCGATGAGCTTCAGT
CGGTGCTTAACGAGGCCCAGGAGCGTTCATCCAAGCTACTGCAGCAACTG
CTCTCCCTCCAGTCAGCTCTCCACCAGCAATACTCCGAGATGAAAAAGTC
GGTGAAGCGCAAGCAGCCCACAGAGGATTCGGGTCCGGCGGTCAAAAAGT
TTGGTTCTGTGCTGCAGAGCAATTTCCAACAAATGATTGGGTATCGCAAT
GAAGTTCTGTTAAAGTGGGACGACCGTACGAAACTCCTGACCCCCGGAGC
GGGTGTCAAACGCAAGTCCTTGCAGGAGGACTACGACATCATCAAAAAGA
TCGGCAGCGCCCTGGCGAACCGAGAGGCGCTCGTGGAAAAGTCCCAGACC
CCAAAGAACAGCCAGGCGGAGCAGCAGGAAAACACGCCCGTGCAGCGATT
GAAGCACATCTACGACGACAGCGATTTCTACCACCAGCAGCTGCGGGAGC
TCATCGAGTACAAGGCCAGCACCTCGTCCAACATGAGCGAGATTACCAAG
CAGTTCGTGGAGCTACAGAAGCTGCGCCAGAAGATGAAGAAGAAGGTGGA
CACCAGGGCCAGCAAGGGGCGAAAGCTGCGATACGTGGTGCACAACAAGC
TCATCAACTTCATGGCGCCCAATGAGAGTAGCGACTGGACGGATGCCTCC
AAGTCCGAGTTGTACAAATCATTGTTTGTCGCAAGCTTTCTAGACCAT
BO12422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aatf-RA | 1467 | CG11188-PA | 1..1464 | 17..1480 | 7320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aatf-RA | 1703 | CG11188-RA | 87..1550 | 17..1480 | 7320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6717711..6719081 | 17..1387 | 6840 | 99.9 | Plus |
| 2L | 23513712 | 2L | 6719136..6719236 | 1380..1480 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:51:17 has no hits.
BO12422.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:56 Download gff for
BO12422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11188-RA | 1..1467 | 17..1481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:10 Download gff for
BO12422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11188-RA | 81..1548 | 9..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:50 Download gff for
BO12422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11188-RA | 87..1550 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:57 Download gff for
BO12422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11188-RA | 81..1548 | 9..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:12 Download gff for
BO12422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aatf-RA | 87..1550 | 17..1482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:12 Download gff for
BO12422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6719137..6719236 | 1381..1482 | 98 | | Plus |
| 2L | 6717711..6719074 | 17..1380 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:50 Download gff for
BO12422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6717711..6719074 | 17..1380 | 100 | -> | Plus |
| arm_2L | 6719137..6719236 | 1381..1482 | 98 | | Plus |
BO12422.pep Sequence
Translation from 16 to 1498
> BO12422.pep
MLRKSKKQPQTVAEKVSKLLAHPNESDSAEDSDFDVATGPRLVDFEEEEY
DLPDARSTDFRKRNVKLLSEQSDRYKGKISSRKELDDDEDKDDEQEVSYE
ESDEDDENLTNFKQKLNAGGAEDSEEETAAGHSESGEESEEIESNLTDFK
KKFEAGDFKYDDDEEEDDDSEEEDHSQESEGDDDDSEDDEAEDDAIKPSD
VMSKTNHQAEIQKGLAVQNQLRIWERLLELRINTQKFTSKANQLPAPETL
TKLASESDELQSVLNEAQERSSKLLQQLLSLQSALHQQYSEMKKSVKRKQ
PTEDSGPAVKKFGSVLQSNFQQMIGYRNEVLLKWDDRTKLLTPGAGVKRK
SLQEDYDIIKKIGSALANREALVEKSQTPKNSQAEQQENTPVQRLKHIYD
DSDFYHQQLRELIEYKASTSSNMSEITKQFVELQKLRQKMKKKVDTRASK
GRKLRYVVHNKLINFMAPNESSDWTDASKSELYKSLFVASFLDH
BO12422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aatf-PA | 488 | CG11188-PA | 1..488 | 1..488 | 2472 | 100 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 770..944 | 24..210 | 185 | 28.3 | Plus |
| l(2)01289-PM | 1193 | CG9432-PM | 770..944 | 24..210 | 185 | 28.3 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 690..846 | 44..194 | 179 | 30.8 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 730..894 | 25..194 | 179 | 27 | Plus |
| l(2)01289-PM | 1193 | CG9432-PM | 690..846 | 44..194 | 179 | 30.8 | Plus |
| l(2)01289-PM | 1193 | CG9432-PM | 730..894 | 25..194 | 179 | 27 | Plus |
| FK506-bp1-PA | 357 | CG6226-PA | 89..245 | 84..258 | 177 | 29.7 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 793..977 | 25..197 | 165 | 26.1 | Plus |
| l(2)01289-PM | 1193 | CG9432-PM | 793..977 | 25..197 | 165 | 26.1 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 801..983 | 24..208 | 159 | 25.4 | Plus |
| l(2)01289-PM | 1193 | CG9432-PM | 801..983 | 24..208 | 159 | 25.4 | Plus |
