Clone BO12427 Report

Search the DGRC for BO12427

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG6125-RB
Protein status:BO12427.pep:
Sequenced Size:1867

Clone Sequence Records

BO12427.3prime Sequence

753 bp (748 high quality bases) assembled on 2006-05-08

> BO12427.3prime
ATGGTCTAGAAAGCTTGCTAGCTTGGCCTCCACAACAGGTGCCTCCTTTT
CCACCTGCAGATGACTCGAAAGCTGGCTATCCTCCTGGCAGAACCGCACA
TTACCCATCACGGGCAGCATCTGCTGCACTTTGAGGCTCATGTTCTGCAG
GATTAGCAGGACATCGTGGCTGGCCATCTCCTTGGCCACCGATATCAGCA
TCTCACTGAAGGTGGCATCGAACTGCATAAAGCGTGCGCAATCGAGAACC
ACTGGGAAATCATTGTGATACAATCTGCATGCTCCTCGCAACTCAGATCG
TAGTGCATCGACGCCTGTGTAATAGACATCCGATTGGGGAACGATGTGCA
CATAGTACGTGGATTCATGCTGTTTAAGGGTGACCTCAAATTTGGGGTTA
CCCAAGCGCAGCAATATAAACACCATGCTGAGAACAATGCCAAAGAGAAG
ACCCAACTCGACGCCAGCCACCAAACAGATGATAAAACTTCCCACCCAGC
TAAAGAAGTCCTTTTTGTTGGTCTGCCATAGCTCCTTAACTGGAGCAAGA
TCAATCATAAAGATGACTGCTGCTATTAAAACTGCCGATAGGGAAGCCTT
TGGAATGTACTGGAAGTAGGGGGTCAGGATGCTCAATGCGGAGAGCACTA
TCAATCCCGTGTAGATCGCAGCCATTGGCGTTCGTACTCCAGATGCCTGA
CTCACCGCCGAGCGGGTGAAGGCTCCGCAGGTGGGCATGGCACTGAAGAA
GGA

BO12427.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6125-PB 1836 CG6125-RB 1099..1833 753..19 3625 99.7 Minus
CG6125-PA 1923 CG6125-RA 1186..1920 753..19 3625 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6125-RC 2406 CG6125-RC 1238..1972 753..19 3645 99.7 Minus
CG6125-RA 2153 CG6125-RA 1194..1928 753..19 3645 99.7 Minus
CG6125-RB 2197 CG6125-RB 1238..1972 753..19 3645 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15403032..15403384 19..371 1765 100 Plus
3R 32079331 3R 15403686..15403883 556..753 960 99 Plus
3R 32079331 3R 15403439..15403625 370..556 935 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:50:25 has no hits.

BO12427.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:32 Download gff for BO12427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6125-PA 1187..1923 18..752 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:12 Download gff for BO12427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6125-PA 1187..1923 18..752 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:53:44 Download gff for BO12427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6125-RB 1236..1973 13..752 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:32 Download gff for BO12427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6125-RB 1239..1976 13..752 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:32 Download gff for BO12427.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15403028..15403382 13..369 99 <- Plus
3R 15403439..15403624 370..555 100 <- Plus
3R 15403686..15403882 556..752 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:53:44 Download gff for BO12427.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11228750..11229104 13..369 99 <- Plus
arm_3R 11229161..11229346 370..555 100 <- Plus
arm_3R 11229408..11229604 556..752 98   Plus

BO12427.5prime Sequence

834 bp (736 high quality bases) assembled on 2006-05-08

> BO12427.5prime
GAAGTTATCAGTCGACATGTCGATTGTAAAGAAGTTGTCCTTCGATGCTG
GCTGCGAGGAGAAGGAGAAGTACACGGCCCAGAATGGCGATGATTACTAT
GGCCAGGCGCACACCGTCGACCTGGACGTGGCCAGCAAGTACTCCAAGCC
CAAGGAGGCCCACTGGCTGGTGCGGCGCATATTCTTCCTCAGCTGGATTA
CCAGTTACGATCGAGAGCAGGCGTTCGCCGATTTGATTGCCGGCATCACC
TTGGGCCTGACCATCATACCACAAAGTATTGCTTATGCCGCGCTGGCAGG
ACTCTCCTCGGAGTACGGCCTGTACTCCGCCTTCATTGGCTCCATCATCT
ATGTTTTCTTTGGGACGATACCACAGGTGTCCATTGGACCCACCAGTCTG
ATGGCCATTCTCACCCTGCAATTCTGCGCCGACAAACCGGTGCAGGTGGT
CATCGTGCTGGCCTTCCTCGCCGGTTTGGTGGAACTGGCCATGGGTGTGT
TCCAGCTGGGATTCATCGTGAGCTTCATACCAGCTCCGGTTACCAAGGCT
TTTACATCCGGCACTGCGCTGATCGTGGTCTTTGCCCAGATCAAGAATCT
CTTAGGTGTTCGCATAAAGGGATTCCCCTCGATCGGTGACTTTTTCACCA
ATATCCGGCCCACGGATGCCGCCATGGGAATCTCGTGCATGGTTGTGCTA
CTTTCGCTGCGGCTACTGTCGCAAGTGAATTTCAAGCAGGACACGCCTGT
TACGCGTCGCCTTAAGAAGATCCTGTGGTACATCAGTATTTCCCGCAATG
CTCTGGTTGTCTTCTTCACTGGCCTTTTGGTTTT

BO12427.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6125-PB 1836 CG6125-RB 1..818 17..834 4090 100 Plus
CG6125-PA 1923 CG6125-RA 119..905 48..834 3935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6125-RC 2406 CG6125-RC 140..957 17..834 4090 100 Plus
CG6125-RB 2197 CG6125-RB 140..957 17..834 4090 100 Plus
CG6125-RA 2153 CG6125-RA 122..913 43..834 3945 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15404642..15405307 712..47 3330 100 Minus
3R 32079331 3R 15404235..15404357 834..712 615 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:22:59 has no hits.

BO12427.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:33 Download gff for BO12427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6125-PB 1..818 17..834 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:13 Download gff for BO12427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6125-PB 1..818 17..834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:02 Download gff for BO12427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6125-RB 133..954 9..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:46 Download gff for BO12427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6125-RB 136..957 9..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:46 Download gff for BO12427.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15404235..15404356 713..834 100 <- Minus
3R 15404642..15405306 48..712 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:02 Download gff for BO12427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11229957..11230078 713..834 100 <- Minus
arm_3R 11230364..11231028 48..712 100 <- Minus

BO12427.complete Sequence

1867 bp assembled on 2008-01-17

GenBank Submission: FJ632438

> BO12427.complete
GAAGTTATCAGTCGACATGTCGATTGTAAAGAAGTTGTCCTTCGATGCTG
GCTGCGAGGAGAAGGAGAAGTACACGGCCCAGAATGGCGATGATTACTAT
GGCCAGGCGCACACCGTCGACCTGGACGTGGCCAGCAAGTACTCCAAGCC
CAAGGAGGCCCACTGGCTGGTGCGGCGCATATTCTTCCTCAGCTGGATTA
CCAGTTACGATCGAGAGCAGGCGTTCGCCGATTTGATTGCCGGCATCACC
TTGGGCCTGACCATCATACCACAAAGTATTGCTTATGCCGCGCTGGCAGG
ACTCTCCTCGGAGTACGGCCTGTACTCCGCCTTCATTGGCTCCATCATCT
ATGTTTTCTTTGGGACGATACCACAGGTGTCCATTGGACCCACCAGTCTG
ATGGCCATTCTCACCCTGCAATTCTGCGCCGACAAACCGGTGCAGGTGGT
CATCGTGCTGGCCTTCCTCGCCGGTTTGGTGGAACTGGCCATGGGTGTGT
TCCAGCTGGGATTCATCGTGAGCTTCATACCAGCTCCGGTTACCAAGGCT
TTTACATCCGGCACTGCGCTGATCGTGGTCTTTGCCCAGATCAAGAATCT
CTTAGGTGTTCGCATAAAGGGATTCCCCTCGATCGGTGACTTTTTCACCA
ATATCCGGCCCACGGATGCCGCCATGGGAATCTCGTGCATGGTTGTGCTA
CTTTCGCTGCGGCTACTGTCGCAAGTGAATTTCAAGCAGGACACGCCTGT
TACGCGTCGCCTTAAGAAGATCCTGTGGTACATCAGTATTTCCCGCAATG
CTCTGGTTGTCTTCTTCACTGGCCTTTTGGTTTTCATCTGGGTGAAGAAG
AGCTCCATTGAGGCGGTCCCCTTTGCGCTTTCCTCAAAGGTTTCCTCGGC
CATGCCCACAATCAAGCTGCCGCCCTTCGCCTTCGAGTATCAGAATCGCA
CCTATGTGTTCACGGATATCCTCCATGAGCTGGGCAGCGGAATTGTTGTG
GTGCCAATTGTGGCGGTTTTGGCCAATGTGGCCATTGCCAAAGCCTTCGT
CAAGGATGGCAATCTGGATGCCTCGCAGGAGATGCTTACTTTGGGTTTGT
GCAACATAGCCGGCTCCTTCTTCAGTGCCATGCCCACCTGCGGAGCCTTC
ACCCGCTCGGCGGTGAGTCAGGCATCTGGAGTACGAACGCCAATGGCTGG
CATCTACACGGGATTGATAGTGCTCTCCGCATTGAGCATCCTGACCCCCT
ACTTCCAGTACATTCCAAAGGCTTCCCTATCGGCAGTTTTAATAGCAGCA
GTCATCTTTATGATTGATCTTGCTCCAGTTAAGGAGCTATGGCAGACCAA
CAAAAAGGACTTCTTTAGCTGGGTGGGAAGTTTTATCATCTGTTTGGTGG
CTGGCGTCGAGTTGGGTCTTCTCTTTGGCATTGTTCTCAGCATGGTGTTT
ATATTGCTGCGCTTGGGTAACCCCAAATTTGAGGTCACCCTTAAACAGCA
TGAATCCACGTACTATGTGCACATCGTTCCCCAATCGGATGTCTATTACA
CAGGCGTCGATGCACTACGATCTGAGTTGCGAGGAGCATGCAGATTGTAT
CACAATGATTTCCCAGTGGTTCTCGATTGCGCACGCTTTATGCAGTTCGA
TGCCACCTTCAGTGAGATGCTGATATCGGTGGCCAAGGAGATGGCCAGCC
ACGATGTCCTGCTAATCCTGCAGAACATGAGCCTCAAAGTGCAGCAGATG
CTGCCCGTGATGGGTAATGTGCGGTTCTGCCAGGAGGATAGCCAGCTTTC
GAGTCATCTGCAGGTGGAAAAGGAGGCACCTGTTGTGGAGGCCAAGCTAG
CAAGCTTTCTAGACCAT

BO12427.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6125-RC 1836 CG6125-PC 1..1833 17..1849 9165 100 Plus
CG6125-RB 1836 CG6125-PB 1..1833 17..1849 9165 100 Plus
CG6125-RA 1923 CG6125-PA 114..1920 43..1849 9020 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6125-RC 2406 CG6125-RC 140..1972 17..1849 9165 100 Plus
CG6125-RB 2197 CG6125-RB 140..1972 17..1849 9165 100 Plus
CG6125-RA 2153 CG6125-RA 122..1928 43..1849 9020 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15404642..15405307 712..47 3330 100 Minus
3R 32079331 3R 15403032..15403384 1849..1497 1765 100 Minus
3R 32079331 3R 15404020..15404357 1049..712 1690 100 Minus
3R 32079331 3R 15403686..15403949 1312..1049 1320 100 Minus
3R 32079331 3R 15403439..15403625 1498..1312 935 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:34:46 has no hits.

BO12427.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:32 Download gff for BO12427.complete
Subject Subject Range Query Range Percent Splice Strand
CG6125-RB 1..1836 17..1850 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:52 Download gff for BO12427.complete
Subject Subject Range Query Range Percent Splice Strand
CG6125-RB 137..1969 17..1851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:45 Download gff for BO12427.complete
Subject Subject Range Query Range Percent Splice Strand
CG6125-RB 137..1969 17..1851 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:32 Download gff for BO12427.complete
Subject Subject Range Query Range Percent Splice Strand
CG6125-RB 133..1973 9..1855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:58 Download gff for BO12427.complete
Subject Subject Range Query Range Percent Splice Strand
CG6125-RB 140..1972 17..1851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:58 Download gff for BO12427.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15403028..15403382 1499..1851 99 <- Minus
3R 15403439..15403624 1313..1498 100 <- Minus
3R 15403686..15403948 1050..1312 100 <- Minus
3R 15404020..15404356 713..1049 100 <- Minus
3R 15404642..15405306 48..712 100 <- Minus
3R 15406901..15406931 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:45 Download gff for BO12427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11228750..11229104 1499..1851 99 <- Minus
arm_3R 11229161..11229346 1313..1498 100 <- Minus
arm_3R 11229408..11229670 1050..1312 100 <- Minus
arm_3R 11229742..11230078 713..1049 100 <- Minus
arm_3R 11230364..11231028 48..712 100 <- Minus
arm_3R 11232623..11232653 17..47 100   Minus

BO12427.pep Sequence

Translation from 16 to 1867

> BO12427.pep
MSIVKKLSFDAGCEEKEKYTAQNGDDYYGQAHTVDLDVASKYSKPKEAHW
LVRRIFFLSWITSYDREQAFADLIAGITLGLTIIPQSIAYAALAGLSSEY
GLYSAFIGSIIYVFFGTIPQVSIGPTSLMAILTLQFCADKPVQVVIVLAF
LAGLVELAMGVFQLGFIVSFIPAPVTKAFTSGTALIVVFAQIKNLLGVRI
KGFPSIGDFFTNIRPTDAAMGISCMVVLLSLRLLSQVNFKQDTPVTRRLK
KILWYISISRNALVVFFTGLLVFIWVKKSSIEAVPFALSSKVSSAMPTIK
LPPFAFEYQNRTYVFTDILHELGSGIVVVPIVAVLANVAIAKAFVKDGNL
DASQEMLTLGLCNIAGSFFSAMPTCGAFTRSAVSQASGVRTPMAGIYTGL
IVLSALSILTPYFQYIPKASLSAVLIAAVIFMIDLAPVKELWQTNKKDFF
SWVGSFIICLVAGVELGLLFGIVLSMVFILLRLGNPKFEVTLKQHESTYY
VHIVPQSDVYYTGVDALRSELRGACRLYHNDFPVVLDCARFMQFDATFSE
MLISVAKEMASHDVLLILQNMSLKVQQMLPVMGNVRFCQEDSQLSSHLQV
EKEAPVVEAKLASFLDH

BO12427.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6125-PC 611 CG6125-PC 1..611 1..611 3070 100 Plus
CG6125-PB 611 CG6125-PB 1..611 1..611 3070 100 Plus
CG6125-PA 640 CG6125-PA 38..640 9..611 3027 99.7 Plus
CG5404-PA 627 CG5404-PA 36..601 45..601 1035 38.9 Plus
CG6928-PA 612 CG6928-PA 6..593 50..611 993 39.2 Plus