Clone Sequence Records
BO12427.3prime Sequence
753 bp (748 high quality bases) assembled on 2006-05-08
> BO12427.3prime
ATGGTCTAGAAAGCTTGCTAGCTTGGCCTCCACAACAGGTGCCTCCTTTT
CCACCTGCAGATGACTCGAAAGCTGGCTATCCTCCTGGCAGAACCGCACA
TTACCCATCACGGGCAGCATCTGCTGCACTTTGAGGCTCATGTTCTGCAG
GATTAGCAGGACATCGTGGCTGGCCATCTCCTTGGCCACCGATATCAGCA
TCTCACTGAAGGTGGCATCGAACTGCATAAAGCGTGCGCAATCGAGAACC
ACTGGGAAATCATTGTGATACAATCTGCATGCTCCTCGCAACTCAGATCG
TAGTGCATCGACGCCTGTGTAATAGACATCCGATTGGGGAACGATGTGCA
CATAGTACGTGGATTCATGCTGTTTAAGGGTGACCTCAAATTTGGGGTTA
CCCAAGCGCAGCAATATAAACACCATGCTGAGAACAATGCCAAAGAGAAG
ACCCAACTCGACGCCAGCCACCAAACAGATGATAAAACTTCCCACCCAGC
TAAAGAAGTCCTTTTTGTTGGTCTGCCATAGCTCCTTAACTGGAGCAAGA
TCAATCATAAAGATGACTGCTGCTATTAAAACTGCCGATAGGGAAGCCTT
TGGAATGTACTGGAAGTAGGGGGTCAGGATGCTCAATGCGGAGAGCACTA
TCAATCCCGTGTAGATCGCAGCCATTGGCGTTCGTACTCCAGATGCCTGA
CTCACCGCCGAGCGGGTGAAGGCTCCGCAGGTGGGCATGGCACTGAAGAA
GGA
BO12427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6125-PB | 1836 | CG6125-RB | 1099..1833 | 753..19 | 3625 | 99.7 | Minus |
CG6125-PA | 1923 | CG6125-RA | 1186..1920 | 753..19 | 3625 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6125-RC | 2406 | CG6125-RC | 1238..1972 | 753..19 | 3645 | 99.7 | Minus |
CG6125-RA | 2153 | CG6125-RA | 1194..1928 | 753..19 | 3645 | 99.7 | Minus |
CG6125-RB | 2197 | CG6125-RB | 1238..1972 | 753..19 | 3645 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15403032..15403384 | 19..371 | 1765 | 100 | Plus |
3R | 32079331 | 3R | 15403686..15403883 | 556..753 | 960 | 99 | Plus |
3R | 32079331 | 3R | 15403439..15403625 | 370..556 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:50:25 has no hits.
BO12427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:32 Download gff for
BO12427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-PA | 1187..1923 | 18..752 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:12 Download gff for
BO12427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-PA | 1187..1923 | 18..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:53:44 Download gff for
BO12427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-RB | 1236..1973 | 13..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:32 Download gff for
BO12427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-RB | 1239..1976 | 13..752 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:32 Download gff for
BO12427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15403028..15403382 | 13..369 | 99 | <- | Plus |
3R | 15403439..15403624 | 370..555 | 100 | <- | Plus |
3R | 15403686..15403882 | 556..752 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:53:44 Download gff for
BO12427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11228750..11229104 | 13..369 | 99 | <- | Plus |
arm_3R | 11229161..11229346 | 370..555 | 100 | <- | Plus |
arm_3R | 11229408..11229604 | 556..752 | 98 | | Plus |
BO12427.5prime Sequence
834 bp (736 high quality bases) assembled on 2006-05-08
> BO12427.5prime
GAAGTTATCAGTCGACATGTCGATTGTAAAGAAGTTGTCCTTCGATGCTG
GCTGCGAGGAGAAGGAGAAGTACACGGCCCAGAATGGCGATGATTACTAT
GGCCAGGCGCACACCGTCGACCTGGACGTGGCCAGCAAGTACTCCAAGCC
CAAGGAGGCCCACTGGCTGGTGCGGCGCATATTCTTCCTCAGCTGGATTA
CCAGTTACGATCGAGAGCAGGCGTTCGCCGATTTGATTGCCGGCATCACC
TTGGGCCTGACCATCATACCACAAAGTATTGCTTATGCCGCGCTGGCAGG
ACTCTCCTCGGAGTACGGCCTGTACTCCGCCTTCATTGGCTCCATCATCT
ATGTTTTCTTTGGGACGATACCACAGGTGTCCATTGGACCCACCAGTCTG
ATGGCCATTCTCACCCTGCAATTCTGCGCCGACAAACCGGTGCAGGTGGT
CATCGTGCTGGCCTTCCTCGCCGGTTTGGTGGAACTGGCCATGGGTGTGT
TCCAGCTGGGATTCATCGTGAGCTTCATACCAGCTCCGGTTACCAAGGCT
TTTACATCCGGCACTGCGCTGATCGTGGTCTTTGCCCAGATCAAGAATCT
CTTAGGTGTTCGCATAAAGGGATTCCCCTCGATCGGTGACTTTTTCACCA
ATATCCGGCCCACGGATGCCGCCATGGGAATCTCGTGCATGGTTGTGCTA
CTTTCGCTGCGGCTACTGTCGCAAGTGAATTTCAAGCAGGACACGCCTGT
TACGCGTCGCCTTAAGAAGATCCTGTGGTACATCAGTATTTCCCGCAATG
CTCTGGTTGTCTTCTTCACTGGCCTTTTGGTTTT
BO12427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6125-PB | 1836 | CG6125-RB | 1..818 | 17..834 | 4090 | 100 | Plus |
CG6125-PA | 1923 | CG6125-RA | 119..905 | 48..834 | 3935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6125-RC | 2406 | CG6125-RC | 140..957 | 17..834 | 4090 | 100 | Plus |
CG6125-RB | 2197 | CG6125-RB | 140..957 | 17..834 | 4090 | 100 | Plus |
CG6125-RA | 2153 | CG6125-RA | 122..913 | 43..834 | 3945 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15404642..15405307 | 712..47 | 3330 | 100 | Minus |
3R | 32079331 | 3R | 15404235..15404357 | 834..712 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:22:59 has no hits.
BO12427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:33 Download gff for
BO12427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-PB | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:13 Download gff for
BO12427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-PB | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:02 Download gff for
BO12427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-RB | 133..954 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:46 Download gff for
BO12427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-RB | 136..957 | 9..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:46 Download gff for
BO12427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15404235..15404356 | 713..834 | 100 | <- | Minus |
3R | 15404642..15405306 | 48..712 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:02 Download gff for
BO12427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11229957..11230078 | 713..834 | 100 | <- | Minus |
arm_3R | 11230364..11231028 | 48..712 | 100 | <- | Minus |
BO12427.complete Sequence
1867 bp assembled on 2008-01-17
GenBank Submission: FJ632438
> BO12427.complete
GAAGTTATCAGTCGACATGTCGATTGTAAAGAAGTTGTCCTTCGATGCTG
GCTGCGAGGAGAAGGAGAAGTACACGGCCCAGAATGGCGATGATTACTAT
GGCCAGGCGCACACCGTCGACCTGGACGTGGCCAGCAAGTACTCCAAGCC
CAAGGAGGCCCACTGGCTGGTGCGGCGCATATTCTTCCTCAGCTGGATTA
CCAGTTACGATCGAGAGCAGGCGTTCGCCGATTTGATTGCCGGCATCACC
TTGGGCCTGACCATCATACCACAAAGTATTGCTTATGCCGCGCTGGCAGG
ACTCTCCTCGGAGTACGGCCTGTACTCCGCCTTCATTGGCTCCATCATCT
ATGTTTTCTTTGGGACGATACCACAGGTGTCCATTGGACCCACCAGTCTG
ATGGCCATTCTCACCCTGCAATTCTGCGCCGACAAACCGGTGCAGGTGGT
CATCGTGCTGGCCTTCCTCGCCGGTTTGGTGGAACTGGCCATGGGTGTGT
TCCAGCTGGGATTCATCGTGAGCTTCATACCAGCTCCGGTTACCAAGGCT
TTTACATCCGGCACTGCGCTGATCGTGGTCTTTGCCCAGATCAAGAATCT
CTTAGGTGTTCGCATAAAGGGATTCCCCTCGATCGGTGACTTTTTCACCA
ATATCCGGCCCACGGATGCCGCCATGGGAATCTCGTGCATGGTTGTGCTA
CTTTCGCTGCGGCTACTGTCGCAAGTGAATTTCAAGCAGGACACGCCTGT
TACGCGTCGCCTTAAGAAGATCCTGTGGTACATCAGTATTTCCCGCAATG
CTCTGGTTGTCTTCTTCACTGGCCTTTTGGTTTTCATCTGGGTGAAGAAG
AGCTCCATTGAGGCGGTCCCCTTTGCGCTTTCCTCAAAGGTTTCCTCGGC
CATGCCCACAATCAAGCTGCCGCCCTTCGCCTTCGAGTATCAGAATCGCA
CCTATGTGTTCACGGATATCCTCCATGAGCTGGGCAGCGGAATTGTTGTG
GTGCCAATTGTGGCGGTTTTGGCCAATGTGGCCATTGCCAAAGCCTTCGT
CAAGGATGGCAATCTGGATGCCTCGCAGGAGATGCTTACTTTGGGTTTGT
GCAACATAGCCGGCTCCTTCTTCAGTGCCATGCCCACCTGCGGAGCCTTC
ACCCGCTCGGCGGTGAGTCAGGCATCTGGAGTACGAACGCCAATGGCTGG
CATCTACACGGGATTGATAGTGCTCTCCGCATTGAGCATCCTGACCCCCT
ACTTCCAGTACATTCCAAAGGCTTCCCTATCGGCAGTTTTAATAGCAGCA
GTCATCTTTATGATTGATCTTGCTCCAGTTAAGGAGCTATGGCAGACCAA
CAAAAAGGACTTCTTTAGCTGGGTGGGAAGTTTTATCATCTGTTTGGTGG
CTGGCGTCGAGTTGGGTCTTCTCTTTGGCATTGTTCTCAGCATGGTGTTT
ATATTGCTGCGCTTGGGTAACCCCAAATTTGAGGTCACCCTTAAACAGCA
TGAATCCACGTACTATGTGCACATCGTTCCCCAATCGGATGTCTATTACA
CAGGCGTCGATGCACTACGATCTGAGTTGCGAGGAGCATGCAGATTGTAT
CACAATGATTTCCCAGTGGTTCTCGATTGCGCACGCTTTATGCAGTTCGA
TGCCACCTTCAGTGAGATGCTGATATCGGTGGCCAAGGAGATGGCCAGCC
ACGATGTCCTGCTAATCCTGCAGAACATGAGCCTCAAAGTGCAGCAGATG
CTGCCCGTGATGGGTAATGTGCGGTTCTGCCAGGAGGATAGCCAGCTTTC
GAGTCATCTGCAGGTGGAAAAGGAGGCACCTGTTGTGGAGGCCAAGCTAG
CAAGCTTTCTAGACCAT
BO12427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6125-RC | 1836 | CG6125-PC | 1..1833 | 17..1849 | 9165 | 100 | Plus |
CG6125-RB | 1836 | CG6125-PB | 1..1833 | 17..1849 | 9165 | 100 | Plus |
CG6125-RA | 1923 | CG6125-PA | 114..1920 | 43..1849 | 9020 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6125-RC | 2406 | CG6125-RC | 140..1972 | 17..1849 | 9165 | 100 | Plus |
CG6125-RB | 2197 | CG6125-RB | 140..1972 | 17..1849 | 9165 | 100 | Plus |
CG6125-RA | 2153 | CG6125-RA | 122..1928 | 43..1849 | 9020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15404642..15405307 | 712..47 | 3330 | 100 | Minus |
3R | 32079331 | 3R | 15403032..15403384 | 1849..1497 | 1765 | 100 | Minus |
3R | 32079331 | 3R | 15404020..15404357 | 1049..712 | 1690 | 100 | Minus |
3R | 32079331 | 3R | 15403686..15403949 | 1312..1049 | 1320 | 100 | Minus |
3R | 32079331 | 3R | 15403439..15403625 | 1498..1312 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:34:46 has no hits.
BO12427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:32 Download gff for
BO12427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-RB | 1..1836 | 17..1850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:52 Download gff for
BO12427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-RB | 137..1969 | 17..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:45 Download gff for
BO12427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-RB | 137..1969 | 17..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:32 Download gff for
BO12427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-RB | 133..1973 | 9..1855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:58 Download gff for
BO12427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6125-RB | 140..1972 | 17..1851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:58 Download gff for
BO12427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15403028..15403382 | 1499..1851 | 99 | <- | Minus |
3R | 15403439..15403624 | 1313..1498 | 100 | <- | Minus |
3R | 15403686..15403948 | 1050..1312 | 100 | <- | Minus |
3R | 15404020..15404356 | 713..1049 | 100 | <- | Minus |
3R | 15404642..15405306 | 48..712 | 100 | <- | Minus |
3R | 15406901..15406931 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:45 Download gff for
BO12427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11228750..11229104 | 1499..1851 | 99 | <- | Minus |
arm_3R | 11229161..11229346 | 1313..1498 | 100 | <- | Minus |
arm_3R | 11229408..11229670 | 1050..1312 | 100 | <- | Minus |
arm_3R | 11229742..11230078 | 713..1049 | 100 | <- | Minus |
arm_3R | 11230364..11231028 | 48..712 | 100 | <- | Minus |
arm_3R | 11232623..11232653 | 17..47 | 100 | | Minus |
BO12427.pep Sequence
Translation from 16 to 1867
> BO12427.pep
MSIVKKLSFDAGCEEKEKYTAQNGDDYYGQAHTVDLDVASKYSKPKEAHW
LVRRIFFLSWITSYDREQAFADLIAGITLGLTIIPQSIAYAALAGLSSEY
GLYSAFIGSIIYVFFGTIPQVSIGPTSLMAILTLQFCADKPVQVVIVLAF
LAGLVELAMGVFQLGFIVSFIPAPVTKAFTSGTALIVVFAQIKNLLGVRI
KGFPSIGDFFTNIRPTDAAMGISCMVVLLSLRLLSQVNFKQDTPVTRRLK
KILWYISISRNALVVFFTGLLVFIWVKKSSIEAVPFALSSKVSSAMPTIK
LPPFAFEYQNRTYVFTDILHELGSGIVVVPIVAVLANVAIAKAFVKDGNL
DASQEMLTLGLCNIAGSFFSAMPTCGAFTRSAVSQASGVRTPMAGIYTGL
IVLSALSILTPYFQYIPKASLSAVLIAAVIFMIDLAPVKELWQTNKKDFF
SWVGSFIICLVAGVELGLLFGIVLSMVFILLRLGNPKFEVTLKQHESTYY
VHIVPQSDVYYTGVDALRSELRGACRLYHNDFPVVLDCARFMQFDATFSE
MLISVAKEMASHDVLLILQNMSLKVQQMLPVMGNVRFCQEDSQLSSHLQV
EKEAPVVEAKLASFLDH
BO12427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6125-PC | 611 | CG6125-PC | 1..611 | 1..611 | 3070 | 100 | Plus |
CG6125-PB | 611 | CG6125-PB | 1..611 | 1..611 | 3070 | 100 | Plus |
CG6125-PA | 640 | CG6125-PA | 38..640 | 9..611 | 3027 | 99.7 | Plus |
CG5404-PA | 627 | CG5404-PA | 36..601 | 45..601 | 1035 | 38.9 | Plus |
CG6928-PA | 612 | CG6928-PA | 6..593 | 50..611 | 993 | 39.2 | Plus |