Clone BO12431 Report

Search the DGRC for BO12431

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG13532-RA
Protein status:BO12431.pep: validated full length
Sequenced Size:823

Clone Sequence Records

BO12431.3prime Sequence

821 bp (820 high quality bases) assembled on 2006-05-08

> BO12431.3prime
ATGGTCTAGAAAGCTTGCACTGCTTAGAGCTAAGGATGCGATGGACATGA
CTACGGCGACCGTTGTCCACTTGCGTTGTATAGTTGAGGCCTTATCATAG
AAAATAGTCTCCCGGCGCTTGGTGTAGTTGGTGCCAACTAGGATAAACGC
ACAGGTGATTGGGGTGGGGGACTCGAGTTGATCTCTAGGAATGCGGGTGC
GAACGGTCATGCTGTAGAGGCCACTGGGGTCCTGGTCCAACTGCGTCAGT
ACCGAGTCCAGTATGTGGGTGTCAAACATGACAGACAGCATGGGTTGCGG
GAAGACGTGCTGGACCGCACACATGATGTCCACGTCCATACGCGAACCGC
TCATCCGCGCTTCCAGCATGAAATCCGATTCAGGAACGATTATTTGCAGG
CGGGCACTCCGCTTATCCGTGGACTCGAAGGTCTGCACTGCACAGGTGTA
CTCCCCCGTCATGTTCCAGTCGGGATTCTTTATCGATATAACACCGGGAC
TGCCCTCCATAGTGAATATTTTGGTGTCTATCTTCGACTTCATGAAGCCC
ATGGCGAACCCCTTGACCGATGGTATCCACTGGTAGATGGAGTGGTTATT
GAACAGCCATTTGAGGACGAATCCTTGCTCCCGCGGCCCGATCTCCACCT
CGCAGTCGAGCACCAGAGGATCGGGTTCGTGGTCTCGGAACAGCGTGTAG
GTGCGTGGCACCCGCAGGTTGGTGATGCGCACCGAGTGAGTGACCGAGAG
TAACGCGAGCACGGCCAGCAGCGTGGCGCGTAGGCCTCGTCCTCGCCAGC
CCGCCATGTCGACTGATAACT

BO12431.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-PA 792 CG13532-RA 1..789 807..19 3945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-RA 1918 CG13532-RA 606..1395 808..19 3950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22871941..22872136 744..549 980 100 Minus
2R 25286936 2R 22873455..22873641 277..91 920 99.5 Minus
2R 25286936 2R 22872229..22872392 550..387 820 100 Minus
2R 25286936 2R 22873267..22873378 387..276 560 100 Minus
2R 25286936 2R 22873827..22873904 96..19 390 100 Minus
2R 25286936 2R 22871795..22871859 808..744 325 100 Minus
Blast to na_te.dros performed on 2015-02-08 13:12:04 has no hits.

BO12431.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:38 Download gff for BO12431.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-PA 1..792 18..807 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:20 Download gff for BO12431.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-PA 1..792 18..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:43:43 Download gff for BO12431.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 598..1401 10..816 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:26:33 Download gff for BO12431.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 598..1401 10..816 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:26:33 Download gff for BO12431.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22871787..22871859 744..816 94 -> Minus
2R 22871942..22872135 550..743 100 -> Minus
2R 22872230..22872392 387..549 100 -> Minus
2R 22873268..22873376 278..386 100 -> Minus
2R 22873455..22873636 96..277 100 -> Minus
2R 22873828..22873910 10..95 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:43:43 Download gff for BO12431.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18759310..18759382 744..816 94 -> Minus
arm_2R 18759465..18759658 550..743 100 -> Minus
arm_2R 18759753..18759915 387..549 100 -> Minus
arm_2R 18760791..18760899 278..386 100 -> Minus
arm_2R 18760978..18761159 96..277 100 -> Minus
arm_2R 18761351..18761433 10..95 95   Minus

BO12431.5prime Sequence

821 bp (820 high quality bases) assembled on 2006-05-08

> BO12431.5prime
GAAGTTATCAGTCGACATGGCGGGCTGGCGAGGACGAGGCCTACGCGCCA
CGCTGCTGGCCGTGCTCGCGTTACTCTCGGTCACTCACTCGGTGCGCATC
ACCAACCTGCGGGTGCCACGCACCTACACGCTGTTCCGAGACCACGAACC
CGATCCTCTGGTGCTCGACTGCGAGGTGGAGATCGGGCCGCGGGAGCAAG
GATTCGTCCTCAAATGGCTGTTCAATAACCACTCCATCTACCAGTGGATA
CCATCGGTCAAGGGGTTCGCCATGGGCTTCATGAAGTCGAAGATAGACAC
CAAAATATTCACTATGGAGGGCAGTCCCGGTGTTATATCGATAAAGAATC
CCGACTGGAACATGACGGGGGAGTACACCTGTGCAGTGCAGACCTTCGAG
TCCACGGATAAGCGGAGTGCCCGCCTGCAAATAATCGTTCCTGAATCGGA
TTTCATGCTGGAAGCGCGGATGAGCGGTTCGCGTATGGACGTGGACATCA
TGTGTGCGGTCCAGCACGTCTTCCCGCAACCCATGCTGTCTGTCATGTTT
GACACCCACATACTGGACTCGGTACTGACGCAGTTGGACCAGGACCCCAG
TGGCCTCTACAGCATGACCGTTCGCACCCGCATTCCTAGAGATCAACTCG
AGTCCCCCACCCCAATCACCTGTGCGTTTATCCTAGTTGGCACCAACTAC
ACCAAGCGCCGGGAGACTATTTTCTATGATAAGGCCTCAACTATACAACG
CAAGTGGACAACGGTCGCCGTAGTCATGTCCATCGCATCCTTAGCTCTAA
GCAGTGCAAGCTTTCTAGACC

BO12431.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-PA 792 CG13532-RA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-RA 1918 CG13532-RA 606..1395 16..805 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22871941..22872136 80..275 980 100 Plus
2R 25286936 2R 22873455..22873641 547..733 920 99.5 Plus
2R 25286936 2R 22872229..22872392 274..437 820 100 Plus
2R 25286936 2R 22873267..22873378 437..548 560 100 Plus
2R 25286936 2R 22873827..22873904 728..805 390 100 Plus
2R 25286936 2R 22871795..22871859 16..80 325 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:25:56 has no hits.

BO12431.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:39 Download gff for BO12431.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-PA 1..792 17..806 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:22 Download gff for BO12431.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-PA 1..792 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:49:00 Download gff for BO12431.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 598..1401 8..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:26 Download gff for BO12431.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 598..1401 8..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:26 Download gff for BO12431.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22872230..22872392 275..437 100 -> Plus
2R 22873268..22873376 438..546 100 -> Plus
2R 22873455..22873636 547..728 100 -> Plus
2R 22873828..22873910 729..814 95   Plus
2R 22871787..22871859 8..80 94 -> Plus
2R 22871942..22872135 81..274 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:49:00 Download gff for BO12431.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18759310..18759382 8..80 94 -> Plus
arm_2R 18759465..18759658 81..274 100 -> Plus
arm_2R 18759753..18759915 275..437 100 -> Plus
arm_2R 18760791..18760899 438..546 100 -> Plus
arm_2R 18760978..18761159 547..728 100 -> Plus
arm_2R 18761351..18761433 729..814 95   Plus

BO12431.complete Sequence

823 bp assembled on 2006-10-11

GenBank Submission: FJ632439

> BO12431.complete
GAAGTTATCAGTCGACATGGCGGGCTGGCGAGGACGAGGCCTACGCGCCA
CGCTGCTGGCCGTGCTCGCGTTACTCTCGGTCACTCACTCGGTGCGCATC
ACCAACCTGCGGGTGCCACGCACCTACACGCTGTTCCGAGACCACGAACC
CGATCCTCTGGTGCTCGACTGCGAGGTGGAGATCGGGCCGCGGGAGCAAG
GATTCGTCCTCAAATGGCTGTTCAATAACCACTCCATCTACCAGTGGATA
CCATCGGTCAAGGGGTTCGCCATGGGCTTCATGAAGTCGAAGATAGACAC
CAAAATATTCACTATGGAGGGCAGTCCCGGTGTTATATCGATAAAGAATC
CCGACTGGAACATGACGGGGGAGTACACCTGTGCAGTGCAGACCTTCGAG
TCCACGGATAAGCGGAGTGCCCGCCTGCAAATAATCGTTCCTGAATCGGA
TTTCATGCTGGAAGCGCGGATGAGCGGTTCGCGTATGGACGTGGACATCA
TGTGTGCGGTCCAGCACGTCTTCCCGCAACCCATGCTGTCTGTCATGTTT
GACACCCACATACTGGACTCGGTACTGACGCAGTTGGACCAGGACCCCAG
TGGCCTCTACAGCATGACCGTTCGCACCCGCATTCCTAGAGATCAACTCG
AGTCCCCCACCCCAATCACCTGTGCGTTTATCCTAGTTGGCACCAACTAC
ACCAAGCGCCGGGAGACTATTTTCTATGATAAGGCCTCAACTATACAACG
CAAGTGGACAACGGTCGCCGTAGTCATGTCCATCGCATCCTTAGCTCTAA
GCAGTGCAAGCTTTCTAGACCAT

BO12431.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-RA 792 CG13532-PA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-RA 1918 CG13532-RA 606..1395 16..805 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22871941..22872136 80..275 980 100 Plus
2R 25286936 2R 22873455..22873641 547..733 920 99.5 Plus
2R 25286936 2R 22872229..22872392 274..437 820 100 Plus
2R 25286936 2R 22873267..22873378 437..548 560 100 Plus
2R 25286936 2R 22873827..22873904 728..805 390 100 Plus
2R 25286936 2R 22871795..22871859 16..80 325 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:29:25 has no hits.

BO12431.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:58 Download gff for BO12431.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 1..792 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:11 Download gff for BO12431.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 496..1299 8..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:24 Download gff for BO12431.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 607..1395 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:59 Download gff for BO12431.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 496..1299 8..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:05 Download gff for BO12431.complete
Subject Subject Range Query Range Percent Splice Strand
CG13532-RA 607..1395 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:05 Download gff for BO12431.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22871796..22871859 17..80 100 -> Plus
2R 22871942..22872135 81..274 100 -> Plus
2R 22872230..22872392 275..437 100 -> Plus
2R 22873268..22873376 438..546 100 -> Plus
2R 22873455..22873636 547..728 100 -> Plus
2R 22873828..22873904 729..807 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:24 Download gff for BO12431.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18759319..18759382 17..80 100 -> Plus
arm_2R 18759465..18759658 81..274 100 -> Plus
arm_2R 18759753..18759915 275..437 100 -> Plus
arm_2R 18760791..18760899 438..546 100 -> Plus
arm_2R 18760978..18761159 547..728 100 -> Plus
arm_2R 18761351..18761427 729..807 97   Plus

BO12431.pep Sequence

Translation from 16 to 823

> BO12431.pep
MAGWRGRGLRATLLAVLALLSVTHSVRITNLRVPRTYTLFRDHEPDPLVL
DCEVEIGPREQGFVLKWLFNNHSIYQWIPSVKGFAMGFMKSKIDTKIFTM
EGSPGVISIKNPDWNMTGEYTCAVQTFESTDKRSARLQIIVPESDFMLEA
RMSGSRMDVDIMCAVQHVFPQPMLSVMFDTHILDSVLTQLDQDPSGLYSM
TVRTRIPRDQLESPTPITCAFILVGTNYTKRRETIFYDKASTIQRKWTTV
AVVMSIASLALSSASFLDH

BO12431.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13532-PA 263 CG13532-PA 1..263 1..263 1364 100 Plus
CG5597-PA 260 CG5597-PA 33..173 39..177 168 27.6 Plus