Clone Sequence Records
BO12431.3prime Sequence
821 bp (820 high quality bases) assembled on 2006-05-08
> BO12431.3prime
ATGGTCTAGAAAGCTTGCACTGCTTAGAGCTAAGGATGCGATGGACATGA
CTACGGCGACCGTTGTCCACTTGCGTTGTATAGTTGAGGCCTTATCATAG
AAAATAGTCTCCCGGCGCTTGGTGTAGTTGGTGCCAACTAGGATAAACGC
ACAGGTGATTGGGGTGGGGGACTCGAGTTGATCTCTAGGAATGCGGGTGC
GAACGGTCATGCTGTAGAGGCCACTGGGGTCCTGGTCCAACTGCGTCAGT
ACCGAGTCCAGTATGTGGGTGTCAAACATGACAGACAGCATGGGTTGCGG
GAAGACGTGCTGGACCGCACACATGATGTCCACGTCCATACGCGAACCGC
TCATCCGCGCTTCCAGCATGAAATCCGATTCAGGAACGATTATTTGCAGG
CGGGCACTCCGCTTATCCGTGGACTCGAAGGTCTGCACTGCACAGGTGTA
CTCCCCCGTCATGTTCCAGTCGGGATTCTTTATCGATATAACACCGGGAC
TGCCCTCCATAGTGAATATTTTGGTGTCTATCTTCGACTTCATGAAGCCC
ATGGCGAACCCCTTGACCGATGGTATCCACTGGTAGATGGAGTGGTTATT
GAACAGCCATTTGAGGACGAATCCTTGCTCCCGCGGCCCGATCTCCACCT
CGCAGTCGAGCACCAGAGGATCGGGTTCGTGGTCTCGGAACAGCGTGTAG
GTGCGTGGCACCCGCAGGTTGGTGATGCGCACCGAGTGAGTGACCGAGAG
TAACGCGAGCACGGCCAGCAGCGTGGCGCGTAGGCCTCGTCCTCGCCAGC
CCGCCATGTCGACTGATAACT
BO12431.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-PA | 792 | CG13532-RA | 1..789 | 807..19 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-RA | 1918 | CG13532-RA | 606..1395 | 808..19 | 3950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:12:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22871941..22872136 | 744..549 | 980 | 100 | Minus |
2R | 25286936 | 2R | 22873455..22873641 | 277..91 | 920 | 99.5 | Minus |
2R | 25286936 | 2R | 22872229..22872392 | 550..387 | 820 | 100 | Minus |
2R | 25286936 | 2R | 22873267..22873378 | 387..276 | 560 | 100 | Minus |
2R | 25286936 | 2R | 22873827..22873904 | 96..19 | 390 | 100 | Minus |
2R | 25286936 | 2R | 22871795..22871859 | 808..744 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:12:04 has no hits.
BO12431.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:38 Download gff for
BO12431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-PA | 1..792 | 18..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:20 Download gff for
BO12431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-PA | 1..792 | 18..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:43:43 Download gff for
BO12431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 598..1401 | 10..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:26:33 Download gff for
BO12431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 598..1401 | 10..816 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:26:33 Download gff for
BO12431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22871787..22871859 | 744..816 | 94 | -> | Minus |
2R | 22871942..22872135 | 550..743 | 100 | -> | Minus |
2R | 22872230..22872392 | 387..549 | 100 | -> | Minus |
2R | 22873268..22873376 | 278..386 | 100 | -> | Minus |
2R | 22873455..22873636 | 96..277 | 100 | -> | Minus |
2R | 22873828..22873910 | 10..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:43:43 Download gff for
BO12431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18759310..18759382 | 744..816 | 94 | -> | Minus |
arm_2R | 18759465..18759658 | 550..743 | 100 | -> | Minus |
arm_2R | 18759753..18759915 | 387..549 | 100 | -> | Minus |
arm_2R | 18760791..18760899 | 278..386 | 100 | -> | Minus |
arm_2R | 18760978..18761159 | 96..277 | 100 | -> | Minus |
arm_2R | 18761351..18761433 | 10..95 | 95 | | Minus |
BO12431.5prime Sequence
821 bp (820 high quality bases) assembled on 2006-05-08
> BO12431.5prime
GAAGTTATCAGTCGACATGGCGGGCTGGCGAGGACGAGGCCTACGCGCCA
CGCTGCTGGCCGTGCTCGCGTTACTCTCGGTCACTCACTCGGTGCGCATC
ACCAACCTGCGGGTGCCACGCACCTACACGCTGTTCCGAGACCACGAACC
CGATCCTCTGGTGCTCGACTGCGAGGTGGAGATCGGGCCGCGGGAGCAAG
GATTCGTCCTCAAATGGCTGTTCAATAACCACTCCATCTACCAGTGGATA
CCATCGGTCAAGGGGTTCGCCATGGGCTTCATGAAGTCGAAGATAGACAC
CAAAATATTCACTATGGAGGGCAGTCCCGGTGTTATATCGATAAAGAATC
CCGACTGGAACATGACGGGGGAGTACACCTGTGCAGTGCAGACCTTCGAG
TCCACGGATAAGCGGAGTGCCCGCCTGCAAATAATCGTTCCTGAATCGGA
TTTCATGCTGGAAGCGCGGATGAGCGGTTCGCGTATGGACGTGGACATCA
TGTGTGCGGTCCAGCACGTCTTCCCGCAACCCATGCTGTCTGTCATGTTT
GACACCCACATACTGGACTCGGTACTGACGCAGTTGGACCAGGACCCCAG
TGGCCTCTACAGCATGACCGTTCGCACCCGCATTCCTAGAGATCAACTCG
AGTCCCCCACCCCAATCACCTGTGCGTTTATCCTAGTTGGCACCAACTAC
ACCAAGCGCCGGGAGACTATTTTCTATGATAAGGCCTCAACTATACAACG
CAAGTGGACAACGGTCGCCGTAGTCATGTCCATCGCATCCTTAGCTCTAA
GCAGTGCAAGCTTTCTAGACC
BO12431.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-PA | 792 | CG13532-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-RA | 1918 | CG13532-RA | 606..1395 | 16..805 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22871941..22872136 | 80..275 | 980 | 100 | Plus |
2R | 25286936 | 2R | 22873455..22873641 | 547..733 | 920 | 99.5 | Plus |
2R | 25286936 | 2R | 22872229..22872392 | 274..437 | 820 | 100 | Plus |
2R | 25286936 | 2R | 22873267..22873378 | 437..548 | 560 | 100 | Plus |
2R | 25286936 | 2R | 22873827..22873904 | 728..805 | 390 | 100 | Plus |
2R | 25286936 | 2R | 22871795..22871859 | 16..80 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:25:56 has no hits.
BO12431.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:39 Download gff for
BO12431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-PA | 1..792 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:22 Download gff for
BO12431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-PA | 1..792 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:49:00 Download gff for
BO12431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 598..1401 | 8..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:26 Download gff for
BO12431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 598..1401 | 8..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:26 Download gff for
BO12431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22872230..22872392 | 275..437 | 100 | -> | Plus |
2R | 22873268..22873376 | 438..546 | 100 | -> | Plus |
2R | 22873455..22873636 | 547..728 | 100 | -> | Plus |
2R | 22873828..22873910 | 729..814 | 95 | | Plus |
2R | 22871787..22871859 | 8..80 | 94 | -> | Plus |
2R | 22871942..22872135 | 81..274 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:49:00 Download gff for
BO12431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18759310..18759382 | 8..80 | 94 | -> | Plus |
arm_2R | 18759465..18759658 | 81..274 | 100 | -> | Plus |
arm_2R | 18759753..18759915 | 275..437 | 100 | -> | Plus |
arm_2R | 18760791..18760899 | 438..546 | 100 | -> | Plus |
arm_2R | 18760978..18761159 | 547..728 | 100 | -> | Plus |
arm_2R | 18761351..18761433 | 729..814 | 95 | | Plus |
BO12431.complete Sequence
823 bp assembled on 2006-10-11
GenBank Submission: FJ632439
> BO12431.complete
GAAGTTATCAGTCGACATGGCGGGCTGGCGAGGACGAGGCCTACGCGCCA
CGCTGCTGGCCGTGCTCGCGTTACTCTCGGTCACTCACTCGGTGCGCATC
ACCAACCTGCGGGTGCCACGCACCTACACGCTGTTCCGAGACCACGAACC
CGATCCTCTGGTGCTCGACTGCGAGGTGGAGATCGGGCCGCGGGAGCAAG
GATTCGTCCTCAAATGGCTGTTCAATAACCACTCCATCTACCAGTGGATA
CCATCGGTCAAGGGGTTCGCCATGGGCTTCATGAAGTCGAAGATAGACAC
CAAAATATTCACTATGGAGGGCAGTCCCGGTGTTATATCGATAAAGAATC
CCGACTGGAACATGACGGGGGAGTACACCTGTGCAGTGCAGACCTTCGAG
TCCACGGATAAGCGGAGTGCCCGCCTGCAAATAATCGTTCCTGAATCGGA
TTTCATGCTGGAAGCGCGGATGAGCGGTTCGCGTATGGACGTGGACATCA
TGTGTGCGGTCCAGCACGTCTTCCCGCAACCCATGCTGTCTGTCATGTTT
GACACCCACATACTGGACTCGGTACTGACGCAGTTGGACCAGGACCCCAG
TGGCCTCTACAGCATGACCGTTCGCACCCGCATTCCTAGAGATCAACTCG
AGTCCCCCACCCCAATCACCTGTGCGTTTATCCTAGTTGGCACCAACTAC
ACCAAGCGCCGGGAGACTATTTTCTATGATAAGGCCTCAACTATACAACG
CAAGTGGACAACGGTCGCCGTAGTCATGTCCATCGCATCCTTAGCTCTAA
GCAGTGCAAGCTTTCTAGACCAT
BO12431.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-RA | 792 | CG13532-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-RA | 1918 | CG13532-RA | 606..1395 | 16..805 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22871941..22872136 | 80..275 | 980 | 100 | Plus |
2R | 25286936 | 2R | 22873455..22873641 | 547..733 | 920 | 99.5 | Plus |
2R | 25286936 | 2R | 22872229..22872392 | 274..437 | 820 | 100 | Plus |
2R | 25286936 | 2R | 22873267..22873378 | 437..548 | 560 | 100 | Plus |
2R | 25286936 | 2R | 22873827..22873904 | 728..805 | 390 | 100 | Plus |
2R | 25286936 | 2R | 22871795..22871859 | 16..80 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:29:25 has no hits.
BO12431.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:58 Download gff for
BO12431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 1..792 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:11 Download gff for
BO12431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 496..1299 | 8..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:24 Download gff for
BO12431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 607..1395 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:59 Download gff for
BO12431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 496..1299 | 8..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:05 Download gff for
BO12431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13532-RA | 607..1395 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:05 Download gff for
BO12431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22871796..22871859 | 17..80 | 100 | -> | Plus |
2R | 22871942..22872135 | 81..274 | 100 | -> | Plus |
2R | 22872230..22872392 | 275..437 | 100 | -> | Plus |
2R | 22873268..22873376 | 438..546 | 100 | -> | Plus |
2R | 22873455..22873636 | 547..728 | 100 | -> | Plus |
2R | 22873828..22873904 | 729..807 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:24 Download gff for
BO12431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18759319..18759382 | 17..80 | 100 | -> | Plus |
arm_2R | 18759465..18759658 | 81..274 | 100 | -> | Plus |
arm_2R | 18759753..18759915 | 275..437 | 100 | -> | Plus |
arm_2R | 18760791..18760899 | 438..546 | 100 | -> | Plus |
arm_2R | 18760978..18761159 | 547..728 | 100 | -> | Plus |
arm_2R | 18761351..18761427 | 729..807 | 97 | | Plus |
BO12431.pep Sequence
Translation from 16 to 823
> BO12431.pep
MAGWRGRGLRATLLAVLALLSVTHSVRITNLRVPRTYTLFRDHEPDPLVL
DCEVEIGPREQGFVLKWLFNNHSIYQWIPSVKGFAMGFMKSKIDTKIFTM
EGSPGVISIKNPDWNMTGEYTCAVQTFESTDKRSARLQIIVPESDFMLEA
RMSGSRMDVDIMCAVQHVFPQPMLSVMFDTHILDSVLTQLDQDPSGLYSM
TVRTRIPRDQLESPTPITCAFILVGTNYTKRRETIFYDKASTIQRKWTTV
AVVMSIASLALSSASFLDH
BO12431.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13532-PA | 263 | CG13532-PA | 1..263 | 1..263 | 1364 | 100 | Plus |
CG5597-PA | 260 | CG5597-PA | 33..173 | 39..177 | 168 | 27.6 | Plus |