Clone Sequence Records
BO12433.3prime Sequence
910 bp (828 high quality bases) assembled on 2006-05-08
> BO12433.3prime
ATGGTCTAGAAAGCTTGCTGTGGGACTATTACTAAGAGCTTGCAGCTCTG
TGCCTTCAATTTCGTGGGAACCACGATCATACCACCACCTTAATATTATT
GTGCGACGCCTGCGCACGACTAGAAAAATGAGCAGTACCCAAACTCCCTG
GAGTCCATTCACCATGTCACAGAGTATCAGGTAATTTGAATTCGATCCCG
AGTAAAATGTTATTATTTCGAGCAGCCAGCTAACGACCATTATTATTCCA
AGTAAGCTGACACATTTAGCGTCTTTTTTAACATCTTCATATTTTTGTTG
GTCAAACAAGCATTTTCGCTCCTGAATGTTTTTTTCAGCCTTGGCGTAGC
CGCTTATACGTTGAAATCCGAAGAACGATATGATGTTAAGCAAAAAACTT
AGAAAAAGTATAGTAGACACTGGAGGAATAAAGTAACGTTGGGAATCTCG
GATGGATTCAGTTAGGCCTTGCAGAAAGTAAGACGGCATTCCTGGGAGTC
CTTTTTGAACAGTTAGTGCAACTATTGTGGCCGGTCCGGAAAAGGCAAAA
ACAGCGTAACACGCAAAATTAAAGGTGGCCCAACTCTTTGAGCATTGAAT
GCAGCAAGGCAACTTGTACCACACATTCAAAAGAACATTGAAGCATATGC
ACAAGTACCAGAAGAAGTAACTTAAAATACAAAACTGTATGACGTAGCCA
ATGAACCCTTGGTTCGGGATCCCATAGATGTGCACAACGGAGTGCACAAA
GTATCCAGACGCCAAGCACAGAGACATCAAACTTAGCGAGAGACCATGCA
AGTTACGCAATAAACGAAGTGTCATGTGCAAATAACTAACTAATAGCAGG
CAGGGCATAGATATAAGCATAAGAACGGCAACAAAAACGAACTTTGCGAA
GGCAATTTGT
BO12433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32476-PA | 1602 | mthl14-RA | 708..1599 | 910..19 | 4410 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mthl14-RA | 2091 | CG32476-RA | 856..1747 | 910..19 | 4430 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 248920..249344 | 890..466 | 2125 | 100 | Minus |
3L | 28110227 | 3L | 249709..249961 | 271..19 | 1265 | 100 | Minus |
3L | 28110227 | 3L | 249531..249650 | 391..272 | 600 | 100 | Minus |
3L | 28110227 | 3L | 249398..249477 | 470..391 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:39:02 has no hits.
BO12433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:42 Download gff for
BO12433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32476-PA | 708..1602 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:26 Download gff for
BO12433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32476-PA | 708..1602 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:02 Download gff for
BO12433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mthl14-RA | 856..1747 | 19..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:48:02 Download gff for
BO12433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mthl14-RA | 856..1747 | 19..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:48:02 Download gff for
BO12433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 248919..249342 | 468..890 | 99 | -> | Minus |
3L | 249401..249477 | 391..467 | 100 | -> | Minus |
3L | 249532..249650 | 272..390 | 100 | -> | Minus |
3L | 249709..249961 | 19..271 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:02 Download gff for
BO12433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 248919..249342 | 468..890 | 99 | -> | Minus |
arm_3L | 249401..249477 | 391..467 | 100 | -> | Minus |
arm_3L | 249532..249650 | 272..390 | 100 | -> | Minus |
arm_3L | 249709..249961 | 19..271 | 100 | | Minus |
BO12433.5prime Sequence
889 bp (826 high quality bases) assembled on 2006-05-08
> BO12433.5prime
GAAGTTATCAGCCTACATGAATCTAGGCCACTGGAATTTTCTCCTAGCTC
TAATCAGTTTACAAACGTTTTTTAACGCCTCCGCACAGATAAGCACTGTA
AATAACAGTTCGAAGGGATCAAACAACTCAAATATTTTCCATGAAGACAC
ATTCAATAGCACTTCGATTGACGTTCTGGACGCCTCAATACATTCAACAC
TGGTTGTACCTCAAACATATTCGACAGAAGCTGCAACAATATCAGGTGCT
AGGTTCGCAACCTCTGTTCCTGTTCAAAGTCCTGTAGACAACCCGTTAGA
TCCGGCGGACTGTTCTCAACGGGAAAAGTACAGAAAGCAACCAGTTGCAA
CACCATCGTCTCGTTTAAGAAAATGCTGCCCACATGGAGAAAACTTAAAT
ATATATCGGGAAAATCAAAGCGATTCGATGTGCGACAACGGGCTCTTAAG
CTTCGAACCGACTATAATAAGTGCAGTTCTGTTCGATAACTGCATTGAAG
ATTTGGAGGTTGAGACTACGCTCGACTACGACATTGGAAATCCGTGCAAC
AGTTCTCTTTTGTACGACGACAAAGACGATGTTTTCTTTGTTCTGCAAGA
CGGTTCGTTATTAATCATCGACAAATTTGGCAACGAATCATACACTGTGA
AGGAACATTATTGCTTGGATATTGATAAGTCAGGACACTTGTTTGCCTTT
ACATGTGTAACCCAAGTGGAAGAACAAATTGCCTTCGCAAAAGTCGTTTT
TGTTGCCGTTCTTATGCTTATATCTATGCCCTGCCTGCTATTAGTTAGTT
ATTTGCACATGACACTTCGTTTATTGCGTAACTTGCATGGTCTCTCGCTA
AGTTTGATGTCTCTGTGCTTGGCGTCTGGATACTTTGTG
BO12433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32476-PA | 1602 | mthl14-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mthl14-RA | 2091 | CG32476-RA | 149..1021 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 248202..248621 | 133..552 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 248674..248867 | 551..744 | 970 | 100 | Plus |
3L | 28110227 | 3L | 248919..249065 | 743..889 | 735 | 100 | Plus |
3L | 28110227 | 3L | 248001..248116 | 17..132 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:40:40 has no hits.
BO12433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:43 Download gff for
BO12433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32476-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:28 Download gff for
BO12433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32476-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:19:52 Download gff for
BO12433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mthl14-RA | 142..1021 | 10..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:10:33 Download gff for
BO12433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mthl14-RA | 142..1021 | 10..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:10:33 Download gff for
BO12433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 247994..248116 | 10..132 | 97 | -> | Plus |
3L | 248202..248621 | 133..552 | 100 | -> | Plus |
3L | 248676..248865 | 553..742 | 100 | -> | Plus |
3L | 248919..249065 | 743..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:19:52 Download gff for
BO12433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 247994..248116 | 10..132 | 97 | -> | Plus |
arm_3L | 248202..248621 | 133..552 | 100 | -> | Plus |
arm_3L | 248676..248865 | 553..742 | 100 | -> | Plus |
arm_3L | 248919..249065 | 743..889 | 100 | | Plus |
BO12433.complete Sequence
1633 bp assembled on 2008-08-14
GenBank Submission: FJ632440
> BO12433.complete
GAAGTTATCAGTCGACATGAATCTAGGCCACTGGAATTTTCTCCTAGCTC
TAATCAGTTTACAAACGTTTTTTAACGCCTCCGCACAGATAAGCACTGTA
AATAACAGTTCGAAGGGATCAAACAACTCAAATATTTTCCATGAAGACAC
ATTCAATAGCACTTCGATTGACGTTCTGGACGCCTCAATACATTCAACAC
TGGTTGTACCTCAAACATATTCGACAGAAGCTGCAACAATATCAGGTGCT
AGGTTCGCAACCTCTGTTCCTGTTCAAAGTCCTGTAGACAACCCGTTAGA
TCCGGCGGACTGTTCTCAACGGGAAAAGTACAGAAAGCAACCAGTTGCAA
CACCATCGTCTCGTTTAAGAAAATGCTGCCCACATGGAGAAAACTTAAAT
ATATATCGGGAAAATCAAAGCGATTCGATGTGCGACAACGGGCTCTTAAG
CTTCGAACCGACTATAATAAGTGCAGTTCTGTTCGATAACTGCATTGAAG
ATTTGGAGGTTGAGACTACGCTCGACTACGACATTGGAAATCCGTGCAAC
AGTTCTCTTTTGTACGACGACAAAGACGATGTTTTCTTTGTTCTGCAAGA
CGGTTCGTTATTAATCATCGACAAATTTGGCAACGAATCATACACTGTGA
AGGAACATTATTGCTTGGATATTGATAAGTCAGGACACTTGTTTGCCTTT
ACATGTGTAACCCAAGTGGAAGAACAAATTGCCTTCGCAAAAGTCGTTTT
TGTTGCCGTTCTTATGCTTATATCTATGCCCTGCCTGCTATTAGTTAGTT
ATTTGCACATGACACTTCGTTTATTGCGTAACTTGCATGGTCTCTCGCTA
AGTTTGATGTCTCTGTGCTTGGCGTCTGGATACTTTGTGCACTCCGTTGT
GCACATCTATGGGATCCCGAACCAAGGGTTCATTGGCTACGTCATACAGT
TTTGTATTTTAAGTTACTTCTTCTGGTACTTGTGCATATGCTTCAATGTT
CTTTTGAATGTGTGGTACAAGTTGCCTTGCTGCATTCAATGCTCAAAGAG
TTGGGCCACCTTTAATTTTGCGTGTTACGCTGTTTTTGCCTTTTCCGGAC
CGGCCACAATAGTTGCACTAACTGTTCAAAAAGGACTCCCAGGAATGCCG
TCTTACTTTCTGCAAGGCCTAACTGAATCCATCCGAGATTCCCAACGTTA
CTTTATTCCTCCAGTGTCTACTATACTTTTTCTAAGTTTTTTGCTTAACA
TCATATCGTTCTTCGGATTTCAACGTATAAGCGGCTACGCCAAGGCTGAA
AAAAACATTCAGGAGCGAAAATGCTTGTTTGACCAACAAAAATATGAAGA
TGTTAAAAAAGACGCTAAATGTGTCAGCTTACTTGGAATAATAATGGTCG
TTAGCTGGCTGCTCGAAATAATAACATTTTACTCGGGATCGAATTCAAAT
TACCTGATACTCTGTGACATGGTGAATGGACTCCAGGGAGTTTGGGTACT
GCTCATTTTTCTAGTCGTGCGCAGGCGTCGCACAATAATATTAAGGTGGT
GGTATGATCGTGGTTCCCACGAAATTGAAGGCACAGAGCTGCAAGCTCTT
AGTAATAGTCCCACAGCAAGCTTTCTAGACCAT
BO12433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mthl14-RA | 1602 | CG32476-PA | 1..1599 | 17..1615 | 7995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mthl14-RA | 2091 | CG32476-RA | 149..1747 | 17..1615 | 7995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 248919..249344 | 743..1168 | 2130 | 100 | Plus |
3L | 28110227 | 3L | 248202..248621 | 133..552 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 249709..249961 | 1363..1615 | 1265 | 100 | Plus |
3L | 28110227 | 3L | 248674..248867 | 551..744 | 970 | 100 | Plus |
3L | 28110227 | 3L | 249531..249650 | 1243..1362 | 600 | 100 | Plus |
3L | 28110227 | 3L | 248001..248116 | 17..132 | 580 | 100 | Plus |
3L | 28110227 | 3L | 249398..249477 | 1164..1243 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:46:41 has no hits.
BO12433.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:16 Download gff for
BO12433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mthl14-RA | 138..1743 | 10..1615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:40 Download gff for
BO12433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mthl14-RA | 149..1747 | 17..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:04 Download gff for
BO12433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mthl14-RA | 145..1743 | 17..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:58 Download gff for
BO12433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mthl14-RA | 149..1747 | 17..1617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:58 Download gff for
BO12433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 248001..248116 | 17..132 | 100 | -> | Plus |
3L | 248676..248865 | 553..742 | 100 | -> | Plus |
3L | 248202..248621 | 133..552 | 100 | -> | Plus |
3L | 248919..249342 | 743..1166 | 100 | -> | Plus |
3L | 249401..249477 | 1167..1243 | 100 | -> | Plus |
3L | 249532..249650 | 1244..1362 | 100 | -> | Plus |
3L | 249709..249961 | 1363..1617 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:40 Download gff for
BO12433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 249709..249961 | 1363..1617 | 99 | | Plus |
arm_3L | 249532..249650 | 1244..1362 | 100 | -> | Plus |
arm_3L | 248001..248116 | 17..132 | 100 | -> | Plus |
arm_3L | 248202..248621 | 133..552 | 100 | -> | Plus |
arm_3L | 248676..248865 | 553..742 | 100 | -> | Plus |
arm_3L | 248919..249342 | 743..1166 | 100 | -> | Plus |
arm_3L | 249401..249477 | 1167..1243 | 100 | -> | Plus |
BO12433.pep Sequence
Translation from 16 to 1633
> BO12433.pep
MNLGHWNFLLALISLQTFFNASAQISTVNNSSKGSNNSNIFHEDTFNSTS
IDVLDASIHSTLVVPQTYSTEAATISGARFATSVPVQSPVDNPLDPADCS
QREKYRKQPVATPSSRLRKCCPHGENLNIYRENQSDSMCDNGLLSFEPTI
ISAVLFDNCIEDLEVETTLDYDIGNPCNSSLLYDDKDDVFFVLQDGSLLI
IDKFGNESYTVKEHYCLDIDKSGHLFAFTCVTQVEEQIAFAKVVFVAVLM
LISMPCLLLVSYLHMTLRLLRNLHGLSLSLMSLCLASGYFVHSVVHIYGI
PNQGFIGYVIQFCILSYFFWYLCICFNVLLNVWYKLPCCIQCSKSWATFN
FACYAVFAFSGPATIVALTVQKGLPGMPSYFLQGLTESIRDSQRYFIPPV
STILFLSFLLNIISFFGFQRISGYAKAEKNIQERKCLFDQQKYEDVKKDA
KCVSLLGIIMVVSWLLEIITFYSGSNSNYLILCDMVNGLQGVWVLLIFLV
VRRRRTIILRWWYDRGSHEIEGTELQALSNSPTASFLDH
BO12433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mthl14-PA | 533 | CG32476-PA | 1..533 | 1..533 | 2802 | 100 | Plus |
mth-PE | 514 | CG6936-PE | 91..513 | 117..537 | 202 | 22.7 | Plus |
mth-PA | 514 | CG6936-PA | 91..513 | 117..537 | 202 | 22.7 | Plus |
mth-PB | 522 | CG6936-PB | 91..478 | 117..502 | 197 | 23.2 | Plus |
mthl10-PA | 577 | CG17061-PA | 191..549 | 188..538 | 174 | 20.8 | Plus |