Clone BO12433 Report

Search the DGRC for BO12433

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptmthl14-RA
Protein status:BO12433.pep: Imported from assembly
Sequenced Size:1633

Clone Sequence Records

BO12433.3prime Sequence

910 bp (828 high quality bases) assembled on 2006-05-08

> BO12433.3prime
ATGGTCTAGAAAGCTTGCTGTGGGACTATTACTAAGAGCTTGCAGCTCTG
TGCCTTCAATTTCGTGGGAACCACGATCATACCACCACCTTAATATTATT
GTGCGACGCCTGCGCACGACTAGAAAAATGAGCAGTACCCAAACTCCCTG
GAGTCCATTCACCATGTCACAGAGTATCAGGTAATTTGAATTCGATCCCG
AGTAAAATGTTATTATTTCGAGCAGCCAGCTAACGACCATTATTATTCCA
AGTAAGCTGACACATTTAGCGTCTTTTTTAACATCTTCATATTTTTGTTG
GTCAAACAAGCATTTTCGCTCCTGAATGTTTTTTTCAGCCTTGGCGTAGC
CGCTTATACGTTGAAATCCGAAGAACGATATGATGTTAAGCAAAAAACTT
AGAAAAAGTATAGTAGACACTGGAGGAATAAAGTAACGTTGGGAATCTCG
GATGGATTCAGTTAGGCCTTGCAGAAAGTAAGACGGCATTCCTGGGAGTC
CTTTTTGAACAGTTAGTGCAACTATTGTGGCCGGTCCGGAAAAGGCAAAA
ACAGCGTAACACGCAAAATTAAAGGTGGCCCAACTCTTTGAGCATTGAAT
GCAGCAAGGCAACTTGTACCACACATTCAAAAGAACATTGAAGCATATGC
ACAAGTACCAGAAGAAGTAACTTAAAATACAAAACTGTATGACGTAGCCA
ATGAACCCTTGGTTCGGGATCCCATAGATGTGCACAACGGAGTGCACAAA
GTATCCAGACGCCAAGCACAGAGACATCAAACTTAGCGAGAGACCATGCA
AGTTACGCAATAAACGAAGTGTCATGTGCAAATAACTAACTAATAGCAGG
CAGGGCATAGATATAAGCATAAGAACGGCAACAAAAACGAACTTTGCGAA
GGCAATTTGT

BO12433.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32476-PA 1602 mthl14-RA 708..1599 910..19 4410 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
mthl14-RA 2091 CG32476-RA 856..1747 910..19 4430 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 248920..249344 890..466 2125 100 Minus
3L 28110227 3L 249709..249961 271..19 1265 100 Minus
3L 28110227 3L 249531..249650 391..272 600 100 Minus
3L 28110227 3L 249398..249477 470..391 400 100 Minus
Blast to na_te.dros performed on 2015-02-03 07:39:02 has no hits.

BO12433.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:42 Download gff for BO12433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32476-PA 708..1602 18..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:26 Download gff for BO12433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32476-PA 708..1602 18..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:02 Download gff for BO12433.3prime
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 856..1747 19..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:48:02 Download gff for BO12433.3prime
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 856..1747 19..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:48:02 Download gff for BO12433.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 248919..249342 468..890 99 -> Minus
3L 249401..249477 391..467 100 -> Minus
3L 249532..249650 272..390 100 -> Minus
3L 249709..249961 19..271 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:02 Download gff for BO12433.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 248919..249342 468..890 99 -> Minus
arm_3L 249401..249477 391..467 100 -> Minus
arm_3L 249532..249650 272..390 100 -> Minus
arm_3L 249709..249961 19..271 100   Minus

BO12433.5prime Sequence

889 bp (826 high quality bases) assembled on 2006-05-08

> BO12433.5prime
GAAGTTATCAGCCTACATGAATCTAGGCCACTGGAATTTTCTCCTAGCTC
TAATCAGTTTACAAACGTTTTTTAACGCCTCCGCACAGATAAGCACTGTA
AATAACAGTTCGAAGGGATCAAACAACTCAAATATTTTCCATGAAGACAC
ATTCAATAGCACTTCGATTGACGTTCTGGACGCCTCAATACATTCAACAC
TGGTTGTACCTCAAACATATTCGACAGAAGCTGCAACAATATCAGGTGCT
AGGTTCGCAACCTCTGTTCCTGTTCAAAGTCCTGTAGACAACCCGTTAGA
TCCGGCGGACTGTTCTCAACGGGAAAAGTACAGAAAGCAACCAGTTGCAA
CACCATCGTCTCGTTTAAGAAAATGCTGCCCACATGGAGAAAACTTAAAT
ATATATCGGGAAAATCAAAGCGATTCGATGTGCGACAACGGGCTCTTAAG
CTTCGAACCGACTATAATAAGTGCAGTTCTGTTCGATAACTGCATTGAAG
ATTTGGAGGTTGAGACTACGCTCGACTACGACATTGGAAATCCGTGCAAC
AGTTCTCTTTTGTACGACGACAAAGACGATGTTTTCTTTGTTCTGCAAGA
CGGTTCGTTATTAATCATCGACAAATTTGGCAACGAATCATACACTGTGA
AGGAACATTATTGCTTGGATATTGATAAGTCAGGACACTTGTTTGCCTTT
ACATGTGTAACCCAAGTGGAAGAACAAATTGCCTTCGCAAAAGTCGTTTT
TGTTGCCGTTCTTATGCTTATATCTATGCCCTGCCTGCTATTAGTTAGTT
ATTTGCACATGACACTTCGTTTATTGCGTAACTTGCATGGTCTCTCGCTA
AGTTTGATGTCTCTGTGCTTGGCGTCTGGATACTTTGTG

BO12433.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32476-PA 1602 mthl14-RA 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
mthl14-RA 2091 CG32476-RA 149..1021 17..889 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 248202..248621 133..552 2100 100 Plus
3L 28110227 3L 248674..248867 551..744 970 100 Plus
3L 28110227 3L 248919..249065 743..889 735 100 Plus
3L 28110227 3L 248001..248116 17..132 580 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:40:40 has no hits.

BO12433.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:43 Download gff for BO12433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32476-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:28 Download gff for BO12433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32476-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:19:52 Download gff for BO12433.5prime
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 142..1021 10..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:10:33 Download gff for BO12433.5prime
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 142..1021 10..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:10:33 Download gff for BO12433.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 247994..248116 10..132 97 -> Plus
3L 248202..248621 133..552 100 -> Plus
3L 248676..248865 553..742 100 -> Plus
3L 248919..249065 743..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:19:52 Download gff for BO12433.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 247994..248116 10..132 97 -> Plus
arm_3L 248202..248621 133..552 100 -> Plus
arm_3L 248676..248865 553..742 100 -> Plus
arm_3L 248919..249065 743..889 100   Plus

BO12433.complete Sequence

1633 bp assembled on 2008-08-14

GenBank Submission: FJ632440

> BO12433.complete
GAAGTTATCAGTCGACATGAATCTAGGCCACTGGAATTTTCTCCTAGCTC
TAATCAGTTTACAAACGTTTTTTAACGCCTCCGCACAGATAAGCACTGTA
AATAACAGTTCGAAGGGATCAAACAACTCAAATATTTTCCATGAAGACAC
ATTCAATAGCACTTCGATTGACGTTCTGGACGCCTCAATACATTCAACAC
TGGTTGTACCTCAAACATATTCGACAGAAGCTGCAACAATATCAGGTGCT
AGGTTCGCAACCTCTGTTCCTGTTCAAAGTCCTGTAGACAACCCGTTAGA
TCCGGCGGACTGTTCTCAACGGGAAAAGTACAGAAAGCAACCAGTTGCAA
CACCATCGTCTCGTTTAAGAAAATGCTGCCCACATGGAGAAAACTTAAAT
ATATATCGGGAAAATCAAAGCGATTCGATGTGCGACAACGGGCTCTTAAG
CTTCGAACCGACTATAATAAGTGCAGTTCTGTTCGATAACTGCATTGAAG
ATTTGGAGGTTGAGACTACGCTCGACTACGACATTGGAAATCCGTGCAAC
AGTTCTCTTTTGTACGACGACAAAGACGATGTTTTCTTTGTTCTGCAAGA
CGGTTCGTTATTAATCATCGACAAATTTGGCAACGAATCATACACTGTGA
AGGAACATTATTGCTTGGATATTGATAAGTCAGGACACTTGTTTGCCTTT
ACATGTGTAACCCAAGTGGAAGAACAAATTGCCTTCGCAAAAGTCGTTTT
TGTTGCCGTTCTTATGCTTATATCTATGCCCTGCCTGCTATTAGTTAGTT
ATTTGCACATGACACTTCGTTTATTGCGTAACTTGCATGGTCTCTCGCTA
AGTTTGATGTCTCTGTGCTTGGCGTCTGGATACTTTGTGCACTCCGTTGT
GCACATCTATGGGATCCCGAACCAAGGGTTCATTGGCTACGTCATACAGT
TTTGTATTTTAAGTTACTTCTTCTGGTACTTGTGCATATGCTTCAATGTT
CTTTTGAATGTGTGGTACAAGTTGCCTTGCTGCATTCAATGCTCAAAGAG
TTGGGCCACCTTTAATTTTGCGTGTTACGCTGTTTTTGCCTTTTCCGGAC
CGGCCACAATAGTTGCACTAACTGTTCAAAAAGGACTCCCAGGAATGCCG
TCTTACTTTCTGCAAGGCCTAACTGAATCCATCCGAGATTCCCAACGTTA
CTTTATTCCTCCAGTGTCTACTATACTTTTTCTAAGTTTTTTGCTTAACA
TCATATCGTTCTTCGGATTTCAACGTATAAGCGGCTACGCCAAGGCTGAA
AAAAACATTCAGGAGCGAAAATGCTTGTTTGACCAACAAAAATATGAAGA
TGTTAAAAAAGACGCTAAATGTGTCAGCTTACTTGGAATAATAATGGTCG
TTAGCTGGCTGCTCGAAATAATAACATTTTACTCGGGATCGAATTCAAAT
TACCTGATACTCTGTGACATGGTGAATGGACTCCAGGGAGTTTGGGTACT
GCTCATTTTTCTAGTCGTGCGCAGGCGTCGCACAATAATATTAAGGTGGT
GGTATGATCGTGGTTCCCACGAAATTGAAGGCACAGAGCTGCAAGCTCTT
AGTAATAGTCCCACAGCAAGCTTTCTAGACCAT

BO12433.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
mthl14-RA 1602 CG32476-PA 1..1599 17..1615 7995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
mthl14-RA 2091 CG32476-RA 149..1747 17..1615 7995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 248919..249344 743..1168 2130 100 Plus
3L 28110227 3L 248202..248621 133..552 2100 100 Plus
3L 28110227 3L 249709..249961 1363..1615 1265 100 Plus
3L 28110227 3L 248674..248867 551..744 970 100 Plus
3L 28110227 3L 249531..249650 1243..1362 600 100 Plus
3L 28110227 3L 248001..248116 17..132 580 100 Plus
3L 28110227 3L 249398..249477 1164..1243 400 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:46:41 has no hits.

BO12433.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:16 Download gff for BO12433.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 138..1743 10..1615 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:40 Download gff for BO12433.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 149..1747 17..1617 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:04 Download gff for BO12433.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 145..1743 17..1617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:58 Download gff for BO12433.complete
Subject Subject Range Query Range Percent Splice Strand
mthl14-RA 149..1747 17..1617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:58 Download gff for BO12433.complete
Subject Subject Range Query Range Percent Splice Strand
3L 248001..248116 17..132 100 -> Plus
3L 248676..248865 553..742 100 -> Plus
3L 248202..248621 133..552 100 -> Plus
3L 248919..249342 743..1166 100 -> Plus
3L 249401..249477 1167..1243 100 -> Plus
3L 249532..249650 1244..1362 100 -> Plus
3L 249709..249961 1363..1617 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:40 Download gff for BO12433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 249709..249961 1363..1617 99   Plus
arm_3L 249532..249650 1244..1362 100 -> Plus
arm_3L 248001..248116 17..132 100 -> Plus
arm_3L 248202..248621 133..552 100 -> Plus
arm_3L 248676..248865 553..742 100 -> Plus
arm_3L 248919..249342 743..1166 100 -> Plus
arm_3L 249401..249477 1167..1243 100 -> Plus

BO12433.pep Sequence

Translation from 16 to 1633

> BO12433.pep
MNLGHWNFLLALISLQTFFNASAQISTVNNSSKGSNNSNIFHEDTFNSTS
IDVLDASIHSTLVVPQTYSTEAATISGARFATSVPVQSPVDNPLDPADCS
QREKYRKQPVATPSSRLRKCCPHGENLNIYRENQSDSMCDNGLLSFEPTI
ISAVLFDNCIEDLEVETTLDYDIGNPCNSSLLYDDKDDVFFVLQDGSLLI
IDKFGNESYTVKEHYCLDIDKSGHLFAFTCVTQVEEQIAFAKVVFVAVLM
LISMPCLLLVSYLHMTLRLLRNLHGLSLSLMSLCLASGYFVHSVVHIYGI
PNQGFIGYVIQFCILSYFFWYLCICFNVLLNVWYKLPCCIQCSKSWATFN
FACYAVFAFSGPATIVALTVQKGLPGMPSYFLQGLTESIRDSQRYFIPPV
STILFLSFLLNIISFFGFQRISGYAKAEKNIQERKCLFDQQKYEDVKKDA
KCVSLLGIIMVVSWLLEIITFYSGSNSNYLILCDMVNGLQGVWVLLIFLV
VRRRRTIILRWWYDRGSHEIEGTELQALSNSPTASFLDH

BO12433.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
mthl14-PA 533 CG32476-PA 1..533 1..533 2802 100 Plus
mth-PE 514 CG6936-PE 91..513 117..537 202 22.7 Plus
mth-PA 514 CG6936-PA 91..513 117..537 202 22.7 Plus
mth-PB 522 CG6936-PB 91..478 117..502 197 23.2 Plus
mthl10-PA 577 CG17061-PA 191..549 188..538 174 20.8 Plus