Clone Sequence Records
BO12434.3prime Sequence
924 bp (883 high quality bases) assembled on 2006-05-08
> BO12434.3prime
ATGGTCTAGAAAGCTTGCAAGAGCGGAGACTAGGGTCTGGTGTAACTTCT
GAACCGTCGTATTGAGCATTTGTCGCAGCACATCATCCTCGGCACAGCTG
ATGGCCAGGGTTTCCAGATTTATTTCCGCACGTTTACCGCTCACCGTCAC
TGGCAGCAGATCGCCCTCGAACATTTTTGGCACGCAGTTGTCGCCGAAGG
TGTCCTGTAGCGTCTCGATTAGGCACTCCCGAAAGCGCGAGTCCTCTGAC
TTGGTTTGCTTTGTGGCACCCTTCAGATTTGTTCCGCCCAACTCCGATTG
CATGATGCAGGCAAGAACGGCATCGGCGTACACATCATTCACATGCGTCG
CTTGCCACTCCATCACAATGATTTTCTGCTCCACAGTTAGCTCGATGCAG
CCGAACACGCGCAGCTTTCGCTCCGCCTCCAGCACCTCAACGCATCCGGC
TCCAATGCGATCCAGCAGTAGCTCTAGAGTGCTCAGCGAGCTGCCCCAGG
GAATCGACTGGCGTTGGGTTACAACAGACATGCTCATATCCGTGTATTTG
CCCAGATCAGAAGGAGCCAAGAGGTGGTACTTAAAGTCGCGCTTAACCAG
AACACCTGAGAGTTTGCTTCCCACCTCCGAGTTCTTGGCTGCGAGGCTTC
CCATCACCTTGGCGGTTTTCTCGCCACGGAAATAAAGATCCACGGCATGT
GTGTTTCGCGGGTTGTAGAATTTTATATCCGTGCTTGCATCTGCTTCGTA
TTCCCGCTGCAGGGCCAACTTCAGACGCGACATCTCGTTCTGCTCGCCGT
GGACGAGCACGACATGCGTTGGCTTTAGTAGGCGGATGAATTCACTGGTC
TGCTGGTAGTCCGTGTGAGCCGAAAACGATATGTAGTCGACGGACATGTT
GAGCGGCAGCTTCTGGCCCGACAG
BO12434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7698-PA | 2055 | CG7698-RA | 1147..2052 | 924..19 | 4530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf73-RA | 2190 | CG7698-RA | 1244..2149 | 924..19 | 4530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18661311..18661754 | 105..548 | 2220 | 100 | Plus |
| 3R | 32079331 | 3R | 18661816..18662191 | 549..924 | 1880 | 100 | Plus |
| 3R | 32079331 | 3R | 18661162..18661249 | 19..106 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:35:29 has no hits.
BO12434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:44 Download gff for
BO12434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7698-PA | 1147..2055 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:28 Download gff for
BO12434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7698-PA | 1147..2055 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:26 Download gff for
BO12434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf73-RA | 1220..2129 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:47:34 Download gff for
BO12434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf73-RA | 1244..2153 | 15..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:47:34 Download gff for
BO12434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18661157..18661248 | 15..105 | 97 | <- | Plus |
| 3R | 18661312..18661754 | 106..548 | 100 | <- | Plus |
| 3R | 18661816..18662191 | 549..924 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:26 Download gff for
BO12434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14486879..14486970 | 15..105 | 97 | <- | Plus |
| arm_3R | 14487034..14487476 | 106..548 | 100 | <- | Plus |
| arm_3R | 14487538..14487913 | 549..924 | 100 | | Plus |
BO12434.5prime Sequence
859 bp (808 high quality bases) assembled on 2006-05-08
> BO12434.5prime
GAAGTTATCACTCGACATGACGCAGGCAACAGGTGATGCACGCATGCCAG
ACGAGGAAAGCGACCTGCTGCAGATCAAGCCACTTGGTGCTGGCCAGGAA
GTGGGACGCTCCTGCATCATGTTGGAATTTAAGGGCAAGAAGATAATGCT
GGACTGCGGAATCCATCCGGGATTGTCCGGCATGGATGCCCTGCCCTACG
TAGATCTAATAGAGGCGGATGAGATTGATCTGCTGTTTATATCACATTTC
CACTTGGATCACTGCGGTGCCTTGCCTTGGTTTCTCATGAAGACCAGCTT
TAAAGGCCGCTGCTTTATGACCCATGCCACGAAAGCCATTTACCGATGGA
TGCTGTCCGATTACATCAAGATCAGTAACATATCCACCGAACAGATGCTA
TACACGGAAGCCGATCTGGAGGCCTCCATGGAGAAGATCGAGACGATCAA
TTTCCACGAGGAGCGCGATGTGATGGGCGTACGCTTTTGTGCCTATATTG
CTGGTCATGTTTTGGGTGCCGCCATGTTCATGATCGAGATTGCTGGCATC
AAGATCTTGTATACTGGTGACTTTTCGCGCCAGGAGGATCGACATTTGAT
GGCTGCCGAAGTGCCACCGATGAAGCCGGATGTTCTTATCACAGAGTCCA
CCTACGGCACTCACATTCACGAGAAAAGAGAGGATCGAGAGAATCGATTT
ACCTCGCTGGTGCAGAAAATTGTTCAGCAAGGCGGGAGATGCTTAATTCC
AGTATTTGCTTTGGGCCGTGCCCAAGAACTGCTACTTATTCTGGATGAAT
TCTGGTCGCAGAACCCGGATCTGCACGAGATTCCCATCTACTATGCCTCC
TCTTTGGGC
BO12434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7698-PA | 2055 | CG7698-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf73-RA | 2190 | CG7698-RA | 97..938 | 16..857 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18662497..18663107 | 857..247 | 3055 | 100 | Minus |
| 3R | 32079331 | 3R | 18663170..18663331 | 246..85 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 18663388..18663456 | 84..16 | 345 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 09:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tirant | 8526 | Tirant TIRANT 8526bp | 2341..2387 | 231..185 | 109 | 70.2 | Minus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2072..2118 | 417..463 | 109 | 70.2 | Plus |
BO12434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:46 Download gff for
BO12434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7698-PA | 1..842 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:30 Download gff for
BO12434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7698-PA | 1..842 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:17:39 Download gff for
BO12434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf73-RA | 70..915 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:47:56 Download gff for
BO12434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf73-RA | 94..939 | 9..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:47:56 Download gff for
BO12434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18662495..18663107 | 247..859 | 99 | <- | Minus |
| 3R | 18663170..18663331 | 85..246 | 100 | <- | Minus |
| 3R | 18663388..18663459 | 9..84 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:17:39 Download gff for
BO12434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14488217..14488829 | 247..859 | 99 | <- | Minus |
| arm_3R | 14488892..14489053 | 85..246 | 100 | <- | Minus |
| arm_3R | 14489110..14489181 | 9..84 | 94 | | Minus |
BO12434.complete Sequence
2086 bp assembled on 2008-08-14
GenBank Submission: FJ632441
> BO12434.complete
GAAGTTATCACTCGACATGACGCAGGCAACAGGTGATGCACGCATGCCAG
ACGAGGAAAGCGACCTGCTGCAGATCAAGCCACTTGGTGCTGGCCAGGAA
GTGGGACGCTCCTGCATCATGTTGGAATTTAAGGGCAAGAAGATAATGCT
GGACTGCGGAATCCATCCGGGATTGTCCGGCATGGATGCCCTGCCCTACG
TAGATCTAATAGAGGCGGATGAGATTGATCTGCTGTTTATATCACATTTC
CACTTGGATCACTGCGGTGCCTTGCCTTGGTTTCTCATGAAGACCAGCTT
TAAAGGCCGCTGCTTTATGACCCATGCCACGAAAGCCATTTACCGATGGA
TGCTGTCCGATTACATCAAGATCAGTAACATATCCACCGAACAGATGCTA
TACACGGAAGCCGATCTGGAGGCCTCCATGGAGAAGATCGAGACGATCAA
TTTCCACGAGGAGCGCGATGTGATGGGCGTACGCTTTTGTGCCTATATTG
CTGGTCATGTTTTGGGTGCCGCCATGTTCATGATCGAGATTGCTGGCATC
AAGATCTTGTATACTGGTGACTTTTCGCGCCAGGAGGATCGACATTTGAT
GGCTGCCGAAGTGCCACCGATGAAGCCGGATGTTCTTATCACAGAGTCCA
CCTACGGCACTCACATTCACGAGAAAAGAGAGGATCGAGAGAATCGATTT
ACCTCGCTGGTGCAGAAAATTGTTCAGCAAGGCGGGAGATGCTTAATTCC
AGTATTTGCTTTGGGCCGTGCCCAAGAACTGCTACTTATTCTGGATGAAT
TCTGGTCGCAGAACCCGGATCTGCACGAGATTCCCATCTACTATGCCTCC
TCTTTGGCCAAGAAGTGCATGGCTGTCTACCAGACGTACATCAATGCTAT
GAACGATCGAATTCGACGACAGATAGCTGTGAACAATCCCTTCGTTTTCC
GCCACATTTCCAACCTGAAGGGTATCGATCACTTCGAGGATATCGGACCC
TGCGTAATCATGGCGTCGCCGGGTATGATGCAGTCGGGATTGTCGCGAGA
GCTCTTCGAGAGCTGGTGCACAGATCCCAAGAACGGAGTGATTATAGCCG
GTTACTGCGTGGAGGGCACTTTGGCCAAAGCCGTTCTCTCCGAGCCGGAG
GAGATCACCACACTGTCGGGCCAGAAGCTGCCGCTCAACATGTCCGTCGA
CTACATATCGTTTTCGGCTCACACGGACTACCAGCAGACCAGTGAATTCA
TCCGCCTACTAAAGCCAACGCATGTCGTGCTCGTCCACGGCGAGCAGAAC
GAGATGTCGCGTCTGAAGTTGGCCCTGCAGCGGGAATACGAAGCAGATGC
AAGCACGGATATAAAATTCTACAACCCGCGAAACACACATGCCGTGGATC
TTTATTTCCGTGGCGAGAAAACCGCCAAGGTGATGGGAAGCCTCGCAGCC
AAGAACTCGGAGGTGGGAAGCAAACTCTCAGGTGTTCTGGTTAAGCGCGA
CTTTAAGTACCACCTCTTGGCTCCTTCTGATCTGGGCAAATACACGGATA
TGAGCATGTCTGTTGTAACCCAACGCCAGTCGATTCCCTGGGGCAGCTCG
CTGAGCACTCTAGAGCTACTGCTGGATCGCATTGGAGCCGGATGCGTTGA
GGTGCTGGAGGCGGAGCGAAAGCTGCGCGTGTTCGGCTGCATCGAGCTAA
CTGTGGAGCAGAAAATCATTGTGATGGAGTGGCAAGCGACGCATGTGAAT
GATGTGTACGCCGATGCCGTTCTTGCCTGCATCATGCAATCGGAGTTGGG
CGGAACAAATCTGAAGGGTGCCACAAAGCAAACCAAGTCAGAGGACTCGC
GCTTTCGGGAGTGCCTAATCGAGACGCTACAGGACACCTTCGGCGACAAC
TGCGTGCCAAAAATGTTCGAGGGCGATCTGCTGCCAGTGACGGTGAGCGG
TAAACGTGCGGAAATAAATCTGGAAACCCTGGCCATCAGCTGTGCCGAGG
ATGATGTGCTGCGACAAATGCTCAATACGACGGTTCAGAAGTTACACCAG
ACCCTAGTCTCCGCTCTTGCAAGCTTTCTAGACCAT
BO12434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf73-RA | 2055 | CG7698-PA | 1..2052 | 17..2068 | 10260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf73-RA | 2190 | CG7698-RA | 97..2149 | 16..2068 | 10265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18661816..18663107 | 1538..247 | 6460 | 100 | Minus |
| 3R | 32079331 | 3R | 18661311..18661754 | 1982..1539 | 2220 | 100 | Minus |
| 3R | 32079331 | 3R | 18663170..18663331 | 246..85 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 18661162..18661249 | 2068..1981 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 18663388..18663456 | 84..16 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:47:37 has no hits.
BO12434.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:49 Download gff for
BO12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7698-RA | 70..2129 | 9..2072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:06 Download gff for
BO12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf73-RA | 74..2125 | 17..2070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:24 Download gff for
BO12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7698-RA | 74..2125 | 17..2070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:53 Download gff for
BO12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf73-RA | 98..2149 | 17..2070 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:53 Download gff for
BO12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18663170..18663331 | 85..246 | 100 | <- | Minus |
| 3R | 18663388..18663455 | 17..84 | 100 | | Minus |
| 3R | 18661159..18661248 | 1982..2070 | 97 | <- | Minus |
| 3R | 18661312..18661754 | 1539..1981 | 100 | <- | Minus |
| 3R | 18661816..18663107 | 247..1538 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:06 Download gff for
BO12434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14486881..14486970 | 1982..2070 | 97 | <- | Minus |
| arm_3R | 14487034..14487476 | 1539..1981 | 100 | <- | Minus |
| arm_3R | 14487538..14488829 | 247..1538 | 100 | <- | Minus |
| arm_3R | 14488892..14489053 | 85..246 | 100 | <- | Minus |
| arm_3R | 14489110..14489177 | 17..84 | 100 | | Minus |
BO12434.pep Sequence
Translation from 16 to 2086
> BO12434.pep
MTQATGDARMPDEESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIH
PGLSGMDALPYVDLIEADEIDLLFISHFHLDHCGALPWFLMKTSFKGRCF
MTHATKAIYRWMLSDYIKISNISTEQMLYTEADLEASMEKIETINFHEER
DVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLMAAEVP
PMKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALG
RAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIR
RQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESW
CTDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLSGQKLPLNMSVDYISFS
AHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIK
FYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVKRDFKYHL
LAPSDLGKYTDMSMSVVTQRQSIPWGSSLSTLELLLDRIGAGCVEVLEAE
RKLRVFGCIELTVEQKIIVMEWQATHVNDVYADAVLACIMQSELGGTNLK
GATKQTKSEDSRFRECLIETLQDTFGDNCVPKMFEGDLLPVTVSGKRAEI
NLETLAISCAEDDVLRQMLNTTVQKLHQTLVSALASFLDH
BO12434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf73-PA | 684 | CG7698-PA | 1..684 | 1..684 | 3540 | 100 | Plus |
| IntS11-PA | 597 | CG1972-PA | 1..440 | 10..456 | 817 | 38.8 | Plus |
| Cpsf100-PA | 756 | CG1957-PA | 2..366 | 15..370 | 301 | 24.4 | Plus |
| IntS9-PA | 654 | CG5222-PA | 9..471 | 28..422 | 205 | 20.7 | Plus |
