Clone Sequence Records
BO12437.3prime Sequence
949 bp (757 high quality bases) assembled on 2006-05-08
> BO12437.3prime
ATGGTCTAGAAAGCTTGCATTAACATCTTCCTTTCCATTTGCATTCAATG
GCTTACTGGGTGGCACATAAAACCACCAGGCGCAAGCAAAAAAGACCACG
GATCCCAGTTTGCAGATCAACGCCAGTAGCCACATATATCGGCTGATATA
GAAATTATCGTAGACTAGACAAGCTCCTCCGGCGTCCTTGTCGCAGGACT
CTTGCCACAAAATGCAGGATTCGTCGATCAGGGCTCCGAAAATCAATGGA
GCTGGTATGGTGCCCAGTAGTCGCACTTTTATCCACTGCAAACCCAACGC
AAATGATCGCTGATCATCCTGAACGCATCTCAGTGTAGCCGACAGCGCGG
GCATGGTGGCGAGAAACGTGAAGACCATCAGGATGAAGCAGAGCGCCACG
AAGAGCGGCAGGGTCTGGCACGTGGAGTCGCACTTTCGGTTGGTGGCATC
TGGCCGGAAATGGGGGGCTTCCGAGGACGGGTTGCCATCGTCCACAAAAC
CAACTTGCTCGATGCAGCTGCAGTTGTGGTAGCGCTTCAGGCTGTTCGCG
TGCTCCTCCTGGACGCATCCTGCGTAGCATGGACTGTAGTACATGACGCC
ATCGACGCCACAGATGGGATCGTAGTTGGTGCGACTGCAGCCGCAGTTGG
AATTGCAACTTGCCACCAAGGCGGGAGAATCGCTACTGGGCTGCATTTTA
TAGCCCGTGGTGACGCCGGCAAACTTCGGATTCGGACAAGAGACCAGAAA
GCAGATGGTAAAGAGTGCCGCCACCGTGGTGGCCAACAGGCACATTTTGA
TGATTCCTCTACAGGCAAGATTCCATTTCTTGACCAAGTAGCCACCGAGA
AAGGTGCCACCGCCTCCAGCTGGCACCGTAATCAGACCCATCACAATGCC
AAGTACATGGGCGAAATGCTGAACTGATTCTCGATCTGTTTGGGCAGGA
BO12437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31634-PA | 2079 | Oatp26F-RA | 1201..2076 | 894..19 | 4380 | 100 | Minus |
CG31634-PA | 2079 | Oatp26F-RA | 1145..1200 | 949..894 | 255 | 98.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp26F-RA | 2418 | CG31634-RA | 1234..2165 | 949..19 | 4620 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6625833..6626454 | 329..949 | 3045 | 99.7 | Plus |
2L | 23513712 | 2L | 6625577..6625771 | 136..330 | 960 | 99.5 | Plus |
2L | 23513712 | 2L | 6625391..6625512 | 19..140 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:45:41 has no hits.
BO12437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:50 Download gff for
BO12437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31634-PA | 1146..2079 | 16..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:36 Download gff for
BO12437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31634-PA | 1146..2079 | 16..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:27:21 Download gff for
BO12437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp26F-RA | 1235..2165 | 19..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:47 Download gff for
BO12437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp26F-RA | 1235..2165 | 19..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:47 Download gff for
BO12437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6625391..6625511 | 19..139 | 100 | <- | Plus |
2L | 6625581..6625769 | 140..328 | 100 | <- | Plus |
2L | 6625833..6626453 | 329..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:27:21 Download gff for
BO12437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6625391..6625511 | 19..139 | 100 | <- | Plus |
arm_2L | 6625581..6625769 | 140..328 | 100 | <- | Plus |
arm_2L | 6625833..6626453 | 329..948 | 99 | | Plus |
BO12437.5prime Sequence
880 bp (824 high quality bases) assembled on 2006-05-08
> BO12437.5prime
GAAGTTATCAGTCGACATGTCGGAGGCTACCATTGAGCTGGACTCGAGCA
TCGCCGTGGCACCCAAGTGCTCCAATGTGAACAACAACAATAGTGCCCGC
TCCAGTCGGGTGGGCAGCTCCATCTCCGGACCGGATTCGGATGCGGAGTG
CCAGCGATTTGGATGGTGCGGCTGGAATCCGGCGTGGCTACAGCGCTTCT
GCACCGCCAAATGGGCTCTTTTCTGGCTCTGCTGGGGCGGTGCTCTCCAA
GGTCTCATCGTGAACGGCCTGATCAATGTGTCCATCTCCACCATCGAGCG
TCGCTTTGGACTTCGCTCCCGGCAAATGGGACTGGTGGCCAGTGGCTACG
ATCTGGCCTCCTTCGCCTGCCTAGTACCAGTTACCTACTACGGCGGACGA
CGTGGTGCCTCCAAGCCGCGCTTCATCGCCATCGGACTGATTGTGATGGG
CATGGGATCGCTGGTCTTCCTGCTGCCCAATTTCCTGGTGGGTAACTACC
GGGCCACTATTGCCGAGGCCAATGTGTGCGAGACAACGGGATTGCCGTTC
AACTCCAACTCCAGCCAGTCGATGACCGCTTGCGAACTGAACGCAATGGG
GGAGGGGCAGAGCGAGAATCTGACCTGGACGGTGTGGCTCTTCCTGGCCG
CCCAATTGCTCCACGGTGCCGGAGCATCGCCCCTCTTTACGCTGGGCGTC
ACATATATCGATGAGAACGTCTCAAAGAAGATGTCATCTGTTTACTTGGG
CATCTACTACACAATGGCCACCGTTGGACCAGCGATTGGCTATGTATTCG
GTGGACAACTGCTGCTCATCTATACGGATTGGATGACCGTGGATCCCGTT
CAACTCAGCCTGACCAACGACAGCAAGGTG
BO12437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31634-PA | 2079 | Oatp26F-RA | 1..864 | 17..880 | 4295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp26F-RA | 2418 | CG31634-RA | 89..953 | 16..880 | 4310 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6628746..6629070 | 574..250 | 1625 | 100 | Minus |
2L | 23513712 | 2L | 6632082..6632319 | 253..16 | 1190 | 100 | Minus |
2L | 23513712 | 2L | 6628515..6628691 | 750..574 | 885 | 100 | Minus |
2L | 23513712 | 2L | 6627501..6627604 | 852..749 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:26:37 has no hits.
BO12437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:51 Download gff for
BO12437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31634-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:37 Download gff for
BO12437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31634-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:22:04 Download gff for
BO12437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp26F-RA | 89..953 | 16..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:29 Download gff for
BO12437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp26F-RA | 89..953 | 16..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:29 Download gff for
BO12437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6626735..6626762 | 853..880 | 96 | <- | Minus |
2L | 6627501..6627603 | 750..852 | 100 | <- | Minus |
2L | 6628516..6628690 | 575..749 | 100 | <- | Minus |
2L | 6628746..6629068 | 252..574 | 100 | <- | Minus |
2L | 6632084..6632323 | 15..251 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:22:04 Download gff for
BO12437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6626735..6626762 | 853..880 | 96 | <- | Minus |
arm_2L | 6627501..6627603 | 750..852 | 100 | <- | Minus |
arm_2L | 6628516..6628690 | 575..749 | 100 | <- | Minus |
arm_2L | 6628746..6629068 | 252..574 | 100 | <- | Minus |
arm_2L | 6632084..6632323 | 15..251 | 98 | <- | Minus |
BO12437.complete Sequence
2110 bp assembled on 2008-11-10
GenBank Submission: KX798592
> BO12437.complete
GAAGTTATCAGTCGACATGTCGGAGGCTACCATTGAGCTGGACTCGAGCA
TCGCCGTGGCACCCAAGTGCTCCAATGTGAACAACAACAATAGTGCCCGC
TCCAGTCGGGTGGGCAGCTCCATCTCCGGACCGGATTCGGATGCGGAGTG
CCAGCGATTTGGATGGTGCGGCTGGAATCCGGCGTGGCTACAGCGCTTCT
GCACCGCCAAATGGGCTCTTTTCTGGCTCTGCTGGGGCGGTGCTCTCCAA
GGTCTCATCGTGAACGGCCTGATCAATGTGTCCATCTCCACCATCGAGCG
TCGCTTTGGACTTCGCTCCCGGCAAATGGGACTGGTGGCCAGTGGCTACG
ATCTGGCCTCCTTCGCCTGCCTAGTACCAGTTACCTACTACGGCGGACGA
CGTGGTGCCTCCAAGCCGCGCTTCATCGCCATCGGACTGATTGTGATGGG
CATGGGATCGCTGGTCTTCCTGCTGCCCAATTTCCTGGTGGGTAACTACC
GGGCCACTATTGCCGAGGCCAATGTGTGCGAGACAACGGGATTGCCGTTC
AACTCCAACTCCAGCCAGTCGATGACCGCTTGCGAACTGAACGCAATGGG
GGAGGGGCAGAGCGAGAATCTGACCTGGACGGTGTGGCTCTTCCTGGCCG
CCCAATTGCTCCACGGTGCCGGAGCATCGCCCCTCTTTACGCTGGGCGTC
ACATATATCGATGAGAACGTCTCAAAGAAGATGTCATCTGTTTACTTGGG
CATCTACTACACAATGGCCACCGTTGGACCAGCGATTGGCTATGTATTCG
GTGGACAACTGCTGCTCATCTATACGGATTGGATGACCGTGGATCCCGTT
CAACTCAGCCTGACCAGCGACAGCAAGGTGTGGATTGGAGCCTGGTGGCT
GGGCTTCATTTTCGCAGCCGCCATGTGTCTGCTCATCGCCTTGCCCATTT
TCGGATATCCCAAGTTGCTGCCCGGCGCGGAGAAGTTGCAGCTGGAAAGG
GTTTCCGAGGCACATGCCACCATATCGGAAGCGGATGACTCCAGTAATGT
GGTCAGGGGACTGCCACGTGCGGTGCTCAGCCTGCTGGCTAATCCCACCT
TCTTTTTCCTGAACCTGGCCGGTGCCACGGAGGGTCTGGTGATAGCCGGA
TTTGCCGCCTTCCTGCCCAAACAGATCGAGAATCAGTTCAGCATTTCGCC
CATGTACTCGGCATTGGTGATGGGTCTGATTACGGTGCCAGCTGGAGGCG
GTGGCACCTTTCTCGGTGGCTACTTGGTCAAGAAATGGAATCTTGCCTGT
AGAGGAATCATCAAAATGTGCCTGTTGGCCACCACGGTGGCGGCACTCTT
TACCATCTGCTTTCTGGTCTCTTGTCCGAATCCGAAGTTTGCCGGCGTCA
CCACGGGCTATAAAATGCAGCCCAGTAGCGATTCTCCCGCCTTGGTGGCA
AGTTGCAATTCCAACTGCGGCTGCAGTCGCACCAACTACGATCCCATCTG
TGGCGTCGATGGCGTCATGTACTACAGTCCATGCTACGCAGGATGCGTCC
AGGAGGAGCACGCGAACAGCCTGAAGCGCTACCACAACTGCAGCTGCATC
GAGCAAGTTGGTTTTGTGGACGATGGCAACCCGTCCTCGGAAGCCCCCCA
TTTCCGGCCAGATGCCACCAACCGAAAGTGCGACTCCACGTGCCAGACCC
TGCCGCTCTTCGTGGCGCTCTGCTTCATCCTGATGGTCTTCACGTTTCTC
GCCACCATGCCCGCGCTGTCGGCTACACTGAGATGCGTTCAGGATGATCA
GCGATCATTTGCGTTGGGTTTGCAGTGGATAAAAGTGCGACTACTGGGCA
CCATACCAGCTCCATTGATTTTCGGAGCCCTGATCGACGAATCCTGCATT
TTGTGGCAAGAGTCCTGCGACAAGGACGCCGGAGGAGCTTGTCTAGTCTA
CGATAATTTCTATATCAGCCGATATATGTGGCTACTGGCGTTGATCTGCA
AACTGGGATCCGTGGTCTTTTTTGCTTGCGCCTGGTGGTTTTATGTGCCA
CCCAGTAAGCCATTGAATGCAAATGGAAAGGAAGATGTTAATGCAAGCTT
TCTAGACCAT
BO12437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp26F-RA | 2079 | CG31634-PA | 1..2076 | 17..2092 | 10380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp26F-RA | 2418 | CG31634-RA | 89..2165 | 16..2092 | 10385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6625833..6626762 | 1782..853 | 4650 | 100 | Minus |
2L | 23513712 | 2L | 6628746..6629070 | 574..250 | 1625 | 100 | Minus |
2L | 23513712 | 2L | 6632082..6632319 | 253..16 | 1190 | 100 | Minus |
2L | 23513712 | 2L | 6625577..6625771 | 1975..1781 | 960 | 99.5 | Minus |
2L | 23513712 | 2L | 6628515..6628691 | 750..574 | 885 | 100 | Minus |
2L | 23513712 | 2L | 6625391..6625512 | 2092..1971 | 610 | 100 | Minus |
2L | 23513712 | 2L | 6627501..6627604 | 852..749 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:35:39 has no hits.
BO12437.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:15:49 Download gff for
BO12437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp26F-RA | 86..2162 | 16..2092 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:51 Download gff for
BO12437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp26F-RA | 90..2165 | 17..2094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:13 Download gff for
BO12437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp26F-RA | 87..2162 | 17..2094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:07 Download gff for
BO12437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oatp26F-RA | 90..2165 | 17..2094 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:07 Download gff for
BO12437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6625581..6625769 | 1783..1971 | 100 | <- | Minus |
2L | 6627501..6627603 | 750..852 | 100 | <- | Minus |
2L | 6625388..6625511 | 1972..2094 | 98 | <- | Minus |
2L | 6628516..6628690 | 575..749 | 100 | <- | Minus |
2L | 6625833..6626762 | 853..1782 | 100 | <- | Minus |
2L | 6628746..6629068 | 252..574 | 100 | <- | Minus |
2L | 6632084..6632318 | 17..251 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:51 Download gff for
BO12437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6625388..6625511 | 1972..2094 | 98 | <- | Minus |
arm_2L | 6625581..6625769 | 1783..1971 | 100 | <- | Minus |
arm_2L | 6625833..6626762 | 853..1782 | 100 | <- | Minus |
arm_2L | 6627501..6627603 | 750..852 | 100 | <- | Minus |
arm_2L | 6628516..6628690 | 575..749 | 100 | <- | Minus |
arm_2L | 6628746..6629068 | 252..574 | 100 | <- | Minus |
arm_2L | 6632084..6632318 | 17..251 | 100 | | Minus |
BO12437.pep Sequence
Translation from 16 to 2110
> BO12437.pep
MSEATIELDSSIAVAPKCSNVNNNNSARSSRVGSSISGPDSDAECQRFGW
CGWNPAWLQRFCTAKWALFWLCWGGALQGLIVNGLINVSISTIERRFGLR
SRQMGLVASGYDLASFACLVPVTYYGGRRGASKPRFIAIGLIVMGMGSLV
FLLPNFLVGNYRATIAEANVCETTGLPFNSNSSQSMTACELNAMGEGQSE
NLTWTVWLFLAAQLLHGAGASPLFTLGVTYIDENVSKKMSSVYLGIYYTM
ATVGPAIGYVFGGQLLLIYTDWMTVDPVQLSLTSDSKVWIGAWWLGFIFA
AAMCLLIALPIFGYPKLLPGAEKLQLERVSEAHATISEADDSSNVVRGLP
RAVLSLLANPTFFFLNLAGATEGLVIAGFAAFLPKQIENQFSISPMYSAL
VMGLITVPAGGGGTFLGGYLVKKWNLACRGIIKMCLLATTVAALFTICFL
VSCPNPKFAGVTTGYKMQPSSDSPALVASCNSNCGCSRTNYDPICGVDGV
MYYSPCYAGCVQEEHANSLKRYHNCSCIEQVGFVDDGNPSSEAPHFRPDA
TNRKCDSTCQTLPLFVALCFILMVFTFLATMPALSATLRCVQDDQRSFAL
GLQWIKVRLLGTIPAPLIFGALIDESCILWQESCDKDAGGACLVYDNFYI
SRYMWLLALICKLGSVVFFACAWWFYVPPSKPLNANGKEDVNASFLDH
BO12437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oatp26F-PA | 692 | CG31634-PA | 1..692 | 1..692 | 3684 | 100 | Plus |
Oatp30B-PD | 1136 | CG3811-PD | 66..798 | 27..686 | 945 | 32.7 | Plus |
Oatp30B-PC | 1197 | CG3811-PC | 127..859 | 27..686 | 945 | 32.7 | Plus |
Oatp30B-PB | 1197 | CG3811-PB | 127..859 | 27..686 | 945 | 32.7 | Plus |
Oatp30B-PA | 1197 | CG3811-PA | 127..859 | 27..686 | 945 | 32.7 | Plus |