Clone BO12437 Report

Search the DGRC for BO12437

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptOatp26F-RA
Protein status:BO12437.pep: Imported from assembly
Sequenced Size:2110

Clone Sequence Records

BO12437.3prime Sequence

949 bp (757 high quality bases) assembled on 2006-05-08

> BO12437.3prime
ATGGTCTAGAAAGCTTGCATTAACATCTTCCTTTCCATTTGCATTCAATG
GCTTACTGGGTGGCACATAAAACCACCAGGCGCAAGCAAAAAAGACCACG
GATCCCAGTTTGCAGATCAACGCCAGTAGCCACATATATCGGCTGATATA
GAAATTATCGTAGACTAGACAAGCTCCTCCGGCGTCCTTGTCGCAGGACT
CTTGCCACAAAATGCAGGATTCGTCGATCAGGGCTCCGAAAATCAATGGA
GCTGGTATGGTGCCCAGTAGTCGCACTTTTATCCACTGCAAACCCAACGC
AAATGATCGCTGATCATCCTGAACGCATCTCAGTGTAGCCGACAGCGCGG
GCATGGTGGCGAGAAACGTGAAGACCATCAGGATGAAGCAGAGCGCCACG
AAGAGCGGCAGGGTCTGGCACGTGGAGTCGCACTTTCGGTTGGTGGCATC
TGGCCGGAAATGGGGGGCTTCCGAGGACGGGTTGCCATCGTCCACAAAAC
CAACTTGCTCGATGCAGCTGCAGTTGTGGTAGCGCTTCAGGCTGTTCGCG
TGCTCCTCCTGGACGCATCCTGCGTAGCATGGACTGTAGTACATGACGCC
ATCGACGCCACAGATGGGATCGTAGTTGGTGCGACTGCAGCCGCAGTTGG
AATTGCAACTTGCCACCAAGGCGGGAGAATCGCTACTGGGCTGCATTTTA
TAGCCCGTGGTGACGCCGGCAAACTTCGGATTCGGACAAGAGACCAGAAA
GCAGATGGTAAAGAGTGCCGCCACCGTGGTGGCCAACAGGCACATTTTGA
TGATTCCTCTACAGGCAAGATTCCATTTCTTGACCAAGTAGCCACCGAGA
AAGGTGCCACCGCCTCCAGCTGGCACCGTAATCAGACCCATCACAATGCC
AAGTACATGGGCGAAATGCTGAACTGATTCTCGATCTGTTTGGGCAGGA

BO12437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31634-PA 2079 Oatp26F-RA 1201..2076 894..19 4380 100 Minus
CG31634-PA 2079 Oatp26F-RA 1145..1200 949..894 255 98.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
Oatp26F-RA 2418 CG31634-RA 1234..2165 949..19 4620 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6625833..6626454 329..949 3045 99.7 Plus
2L 23513712 2L 6625577..6625771 136..330 960 99.5 Plus
2L 23513712 2L 6625391..6625512 19..140 610 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:45:41 has no hits.

BO12437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:50 Download gff for BO12437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31634-PA 1146..2079 16..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:36 Download gff for BO12437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31634-PA 1146..2079 16..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:27:21 Download gff for BO12437.3prime
Subject Subject Range Query Range Percent Splice Strand
Oatp26F-RA 1235..2165 19..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:47 Download gff for BO12437.3prime
Subject Subject Range Query Range Percent Splice Strand
Oatp26F-RA 1235..2165 19..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:47 Download gff for BO12437.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6625391..6625511 19..139 100 <- Plus
2L 6625581..6625769 140..328 100 <- Plus
2L 6625833..6626453 329..948 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:27:21 Download gff for BO12437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6625391..6625511 19..139 100 <- Plus
arm_2L 6625581..6625769 140..328 100 <- Plus
arm_2L 6625833..6626453 329..948 99   Plus

BO12437.5prime Sequence

880 bp (824 high quality bases) assembled on 2006-05-08

> BO12437.5prime
GAAGTTATCAGTCGACATGTCGGAGGCTACCATTGAGCTGGACTCGAGCA
TCGCCGTGGCACCCAAGTGCTCCAATGTGAACAACAACAATAGTGCCCGC
TCCAGTCGGGTGGGCAGCTCCATCTCCGGACCGGATTCGGATGCGGAGTG
CCAGCGATTTGGATGGTGCGGCTGGAATCCGGCGTGGCTACAGCGCTTCT
GCACCGCCAAATGGGCTCTTTTCTGGCTCTGCTGGGGCGGTGCTCTCCAA
GGTCTCATCGTGAACGGCCTGATCAATGTGTCCATCTCCACCATCGAGCG
TCGCTTTGGACTTCGCTCCCGGCAAATGGGACTGGTGGCCAGTGGCTACG
ATCTGGCCTCCTTCGCCTGCCTAGTACCAGTTACCTACTACGGCGGACGA
CGTGGTGCCTCCAAGCCGCGCTTCATCGCCATCGGACTGATTGTGATGGG
CATGGGATCGCTGGTCTTCCTGCTGCCCAATTTCCTGGTGGGTAACTACC
GGGCCACTATTGCCGAGGCCAATGTGTGCGAGACAACGGGATTGCCGTTC
AACTCCAACTCCAGCCAGTCGATGACCGCTTGCGAACTGAACGCAATGGG
GGAGGGGCAGAGCGAGAATCTGACCTGGACGGTGTGGCTCTTCCTGGCCG
CCCAATTGCTCCACGGTGCCGGAGCATCGCCCCTCTTTACGCTGGGCGTC
ACATATATCGATGAGAACGTCTCAAAGAAGATGTCATCTGTTTACTTGGG
CATCTACTACACAATGGCCACCGTTGGACCAGCGATTGGCTATGTATTCG
GTGGACAACTGCTGCTCATCTATACGGATTGGATGACCGTGGATCCCGTT
CAACTCAGCCTGACCAACGACAGCAAGGTG

BO12437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31634-PA 2079 Oatp26F-RA 1..864 17..880 4295 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Oatp26F-RA 2418 CG31634-RA 89..953 16..880 4310 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6628746..6629070 574..250 1625 100 Minus
2L 23513712 2L 6632082..6632319 253..16 1190 100 Minus
2L 23513712 2L 6628515..6628691 750..574 885 100 Minus
2L 23513712 2L 6627501..6627604 852..749 520 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:26:37 has no hits.

BO12437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:51 Download gff for BO12437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31634-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:37 Download gff for BO12437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31634-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:22:04 Download gff for BO12437.5prime
Subject Subject Range Query Range Percent Splice Strand
Oatp26F-RA 89..953 16..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:29 Download gff for BO12437.5prime
Subject Subject Range Query Range Percent Splice Strand
Oatp26F-RA 89..953 16..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:29 Download gff for BO12437.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6626735..6626762 853..880 96 <- Minus
2L 6627501..6627603 750..852 100 <- Minus
2L 6628516..6628690 575..749 100 <- Minus
2L 6628746..6629068 252..574 100 <- Minus
2L 6632084..6632323 15..251 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:22:04 Download gff for BO12437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6626735..6626762 853..880 96 <- Minus
arm_2L 6627501..6627603 750..852 100 <- Minus
arm_2L 6628516..6628690 575..749 100 <- Minus
arm_2L 6628746..6629068 252..574 100 <- Minus
arm_2L 6632084..6632323 15..251 98 <- Minus

BO12437.complete Sequence

2110 bp assembled on 2008-11-10

GenBank Submission: KX798592

> BO12437.complete
GAAGTTATCAGTCGACATGTCGGAGGCTACCATTGAGCTGGACTCGAGCA
TCGCCGTGGCACCCAAGTGCTCCAATGTGAACAACAACAATAGTGCCCGC
TCCAGTCGGGTGGGCAGCTCCATCTCCGGACCGGATTCGGATGCGGAGTG
CCAGCGATTTGGATGGTGCGGCTGGAATCCGGCGTGGCTACAGCGCTTCT
GCACCGCCAAATGGGCTCTTTTCTGGCTCTGCTGGGGCGGTGCTCTCCAA
GGTCTCATCGTGAACGGCCTGATCAATGTGTCCATCTCCACCATCGAGCG
TCGCTTTGGACTTCGCTCCCGGCAAATGGGACTGGTGGCCAGTGGCTACG
ATCTGGCCTCCTTCGCCTGCCTAGTACCAGTTACCTACTACGGCGGACGA
CGTGGTGCCTCCAAGCCGCGCTTCATCGCCATCGGACTGATTGTGATGGG
CATGGGATCGCTGGTCTTCCTGCTGCCCAATTTCCTGGTGGGTAACTACC
GGGCCACTATTGCCGAGGCCAATGTGTGCGAGACAACGGGATTGCCGTTC
AACTCCAACTCCAGCCAGTCGATGACCGCTTGCGAACTGAACGCAATGGG
GGAGGGGCAGAGCGAGAATCTGACCTGGACGGTGTGGCTCTTCCTGGCCG
CCCAATTGCTCCACGGTGCCGGAGCATCGCCCCTCTTTACGCTGGGCGTC
ACATATATCGATGAGAACGTCTCAAAGAAGATGTCATCTGTTTACTTGGG
CATCTACTACACAATGGCCACCGTTGGACCAGCGATTGGCTATGTATTCG
GTGGACAACTGCTGCTCATCTATACGGATTGGATGACCGTGGATCCCGTT
CAACTCAGCCTGACCAGCGACAGCAAGGTGTGGATTGGAGCCTGGTGGCT
GGGCTTCATTTTCGCAGCCGCCATGTGTCTGCTCATCGCCTTGCCCATTT
TCGGATATCCCAAGTTGCTGCCCGGCGCGGAGAAGTTGCAGCTGGAAAGG
GTTTCCGAGGCACATGCCACCATATCGGAAGCGGATGACTCCAGTAATGT
GGTCAGGGGACTGCCACGTGCGGTGCTCAGCCTGCTGGCTAATCCCACCT
TCTTTTTCCTGAACCTGGCCGGTGCCACGGAGGGTCTGGTGATAGCCGGA
TTTGCCGCCTTCCTGCCCAAACAGATCGAGAATCAGTTCAGCATTTCGCC
CATGTACTCGGCATTGGTGATGGGTCTGATTACGGTGCCAGCTGGAGGCG
GTGGCACCTTTCTCGGTGGCTACTTGGTCAAGAAATGGAATCTTGCCTGT
AGAGGAATCATCAAAATGTGCCTGTTGGCCACCACGGTGGCGGCACTCTT
TACCATCTGCTTTCTGGTCTCTTGTCCGAATCCGAAGTTTGCCGGCGTCA
CCACGGGCTATAAAATGCAGCCCAGTAGCGATTCTCCCGCCTTGGTGGCA
AGTTGCAATTCCAACTGCGGCTGCAGTCGCACCAACTACGATCCCATCTG
TGGCGTCGATGGCGTCATGTACTACAGTCCATGCTACGCAGGATGCGTCC
AGGAGGAGCACGCGAACAGCCTGAAGCGCTACCACAACTGCAGCTGCATC
GAGCAAGTTGGTTTTGTGGACGATGGCAACCCGTCCTCGGAAGCCCCCCA
TTTCCGGCCAGATGCCACCAACCGAAAGTGCGACTCCACGTGCCAGACCC
TGCCGCTCTTCGTGGCGCTCTGCTTCATCCTGATGGTCTTCACGTTTCTC
GCCACCATGCCCGCGCTGTCGGCTACACTGAGATGCGTTCAGGATGATCA
GCGATCATTTGCGTTGGGTTTGCAGTGGATAAAAGTGCGACTACTGGGCA
CCATACCAGCTCCATTGATTTTCGGAGCCCTGATCGACGAATCCTGCATT
TTGTGGCAAGAGTCCTGCGACAAGGACGCCGGAGGAGCTTGTCTAGTCTA
CGATAATTTCTATATCAGCCGATATATGTGGCTACTGGCGTTGATCTGCA
AACTGGGATCCGTGGTCTTTTTTGCTTGCGCCTGGTGGTTTTATGTGCCA
CCCAGTAAGCCATTGAATGCAAATGGAAAGGAAGATGTTAATGCAAGCTT
TCTAGACCAT

BO12437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Oatp26F-RA 2079 CG31634-PA 1..2076 17..2092 10380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Oatp26F-RA 2418 CG31634-RA 89..2165 16..2092 10385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6625833..6626762 1782..853 4650 100 Minus
2L 23513712 2L 6628746..6629070 574..250 1625 100 Minus
2L 23513712 2L 6632082..6632319 253..16 1190 100 Minus
2L 23513712 2L 6625577..6625771 1975..1781 960 99.5 Minus
2L 23513712 2L 6628515..6628691 750..574 885 100 Minus
2L 23513712 2L 6625391..6625512 2092..1971 610 100 Minus
2L 23513712 2L 6627501..6627604 852..749 520 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:35:39 has no hits.

BO12437.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:15:49 Download gff for BO12437.complete
Subject Subject Range Query Range Percent Splice Strand
Oatp26F-RA 86..2162 16..2092 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:51 Download gff for BO12437.complete
Subject Subject Range Query Range Percent Splice Strand
Oatp26F-RA 90..2165 17..2094 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:13 Download gff for BO12437.complete
Subject Subject Range Query Range Percent Splice Strand
Oatp26F-RA 87..2162 17..2094 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:07 Download gff for BO12437.complete
Subject Subject Range Query Range Percent Splice Strand
Oatp26F-RA 90..2165 17..2094 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:07 Download gff for BO12437.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6625581..6625769 1783..1971 100 <- Minus
2L 6627501..6627603 750..852 100 <- Minus
2L 6625388..6625511 1972..2094 98 <- Minus
2L 6628516..6628690 575..749 100 <- Minus
2L 6625833..6626762 853..1782 100 <- Minus
2L 6628746..6629068 252..574 100 <- Minus
2L 6632084..6632318 17..251 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:51 Download gff for BO12437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6625388..6625511 1972..2094 98 <- Minus
arm_2L 6625581..6625769 1783..1971 100 <- Minus
arm_2L 6625833..6626762 853..1782 100 <- Minus
arm_2L 6627501..6627603 750..852 100 <- Minus
arm_2L 6628516..6628690 575..749 100 <- Minus
arm_2L 6628746..6629068 252..574 100 <- Minus
arm_2L 6632084..6632318 17..251 100   Minus

BO12437.pep Sequence

Translation from 16 to 2110

> BO12437.pep
MSEATIELDSSIAVAPKCSNVNNNNSARSSRVGSSISGPDSDAECQRFGW
CGWNPAWLQRFCTAKWALFWLCWGGALQGLIVNGLINVSISTIERRFGLR
SRQMGLVASGYDLASFACLVPVTYYGGRRGASKPRFIAIGLIVMGMGSLV
FLLPNFLVGNYRATIAEANVCETTGLPFNSNSSQSMTACELNAMGEGQSE
NLTWTVWLFLAAQLLHGAGASPLFTLGVTYIDENVSKKMSSVYLGIYYTM
ATVGPAIGYVFGGQLLLIYTDWMTVDPVQLSLTSDSKVWIGAWWLGFIFA
AAMCLLIALPIFGYPKLLPGAEKLQLERVSEAHATISEADDSSNVVRGLP
RAVLSLLANPTFFFLNLAGATEGLVIAGFAAFLPKQIENQFSISPMYSAL
VMGLITVPAGGGGTFLGGYLVKKWNLACRGIIKMCLLATTVAALFTICFL
VSCPNPKFAGVTTGYKMQPSSDSPALVASCNSNCGCSRTNYDPICGVDGV
MYYSPCYAGCVQEEHANSLKRYHNCSCIEQVGFVDDGNPSSEAPHFRPDA
TNRKCDSTCQTLPLFVALCFILMVFTFLATMPALSATLRCVQDDQRSFAL
GLQWIKVRLLGTIPAPLIFGALIDESCILWQESCDKDAGGACLVYDNFYI
SRYMWLLALICKLGSVVFFACAWWFYVPPSKPLNANGKEDVNASFLDH

BO12437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
Oatp26F-PA 692 CG31634-PA 1..692 1..692 3684 100 Plus
Oatp30B-PD 1136 CG3811-PD 66..798 27..686 945 32.7 Plus
Oatp30B-PC 1197 CG3811-PC 127..859 27..686 945 32.7 Plus
Oatp30B-PB 1197 CG3811-PB 127..859 27..686 945 32.7 Plus
Oatp30B-PA 1197 CG3811-PA 127..859 27..686 945 32.7 Plus