Clone Sequence Records
BO12438.3prime Sequence
389 bp (388 high quality bases) assembled on 2006-05-08
> BO12438.3prime
ATGGTCTAGAAAGCTTGCGGGCTGTGGAGGGTGGGCGGCGATGTATTCCA
GGGCGCGGAGGATGGCCTCCGGGATTGGGGGAGCGGTGGGAAGGTGATCG
CCCTGAGGCTGGAAGCCGTTTTCATCGGCGACGTAGGTCAGTGAGATGGG
GACGCCTTCGGGGGAGATGTAAGAGCTGCTTCCGCTAATGCCATTGACGT
TTCCGGCCTCCTGGGCCTGAATACCATTGCTGGTCTCGAAGGCGTATTGG
TAGTTGCCCTCGGCGTCGGCAGGATTAACATCCTCGCGGGTGATCACGGC
ATCCTTGTTTATGTTGTCCGCATACACATTGGCCAGCATCAGAGCGGCGA
GCAGGCAGAGCGATAGCTTAAACATGTCGACTGATAACT
BO12438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7658-PA | 360 | CG7658-RA | 1..357 | 375..19 | 1785 | 100 | Minus |
| CG7673-PA | 369 | Edg78E-RA | 106..143 | 261..224 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr78Cc-RA | 522 | CG7658-RA | 42..398 | 375..19 | 1785 | 100 | Minus |
| Edg78E-RB | 546 | CG7673-RB | 174..403 | 269..40 | 250 | 75 | Minus |
| Edg78E-RA | 967 | CG7673-RA | 174..403 | 269..40 | 250 | 75 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21300703..21301047 | 363..19 | 1725 | 100 | Minus |
| 3L | 28110227 | 3L | 21297327..21297556 | 40..269 | 250 | 73.9 | Plus |
| 3L | 28110227 | 3L | 6161392..6161450 | 144..86 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:52:11 has no hits.
BO12438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:52 Download gff for
BO12438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7658-PA | 1..360 | 15..375 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:38 Download gff for
BO12438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7658-PA | 1..360 | 15..375 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:44:04 Download gff for
BO12438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Cc-RA | 35..401 | 15..383 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:05 Download gff for
BO12438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Cc-RA | 35..401 | 15..383 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:05 Download gff for
BO12438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21300703..21301050 | 15..363 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:44:04 Download gff for
BO12438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21293803..21294150 | 15..363 | 99 | | Minus |
BO12438.5prime Sequence
389 bp (388 high quality bases) assembled on 2006-05-08
> BO12438.5prime
GAAGTTATCAGTCGACATGTTTAAGCTATCGCTCTGCCTGCTCGCCGCTC
TGATGCTGGCCAATGTGTATGCGGACAACATAAACAAGGATGCCGTGATC
ACCCGCGAGGATGTTAATCCTGCCGACGCCGAGGGCAACTACCAATACGC
CTTCGAGACCAGCAATGGTATTCAGGCCCAGGAGGCCGGAAACGTCAATG
GCATTAGCGGAAGCAGCTCTTACATCTCCCCCGAAGGCGTCCCCATCTCA
CTGACCTACGTCGCCGATGAAAACGGCTTCCAGCCTCAGGGCGATCACCT
TCCCACCGCTCCCCCAATCCCGGAGGCCATCCTCCGCGCCCTGGAATACA
TCGCCGCCCACCCTCCACAGCCCGCAAGCTTTCTAGACC
BO12438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7658-PA | 360 | CG7658-RA | 1..357 | 17..373 | 1785 | 100 | Plus |
| CG7673-PA | 369 | Edg78E-RA | 106..143 | 131..168 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr78Cc-RA | 522 | CG7658-RA | 42..398 | 17..373 | 1785 | 100 | Plus |
| Edg78E-RB | 546 | CG7673-RB | 174..403 | 123..352 | 250 | 75 | Plus |
| Edg78E-RA | 967 | CG7673-RA | 174..403 | 123..352 | 250 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21300703..21301047 | 29..373 | 1725 | 100 | Plus |
| 3L | 28110227 | 3L | 21297327..21297556 | 352..123 | 250 | 73.9 | Minus |
| 3L | 28110227 | 3L | 6161392..6161450 | 248..306 | 190 | 88.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:04:44 has no hits.
BO12438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:53 Download gff for
BO12438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7658-PA | 1..360 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:41 Download gff for
BO12438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7658-PA | 1..360 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:27:48 Download gff for
BO12438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Cc-RA | 35..401 | 9..377 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:10:37 Download gff for
BO12438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Cc-RA | 35..401 | 9..377 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:10:37 Download gff for
BO12438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21300703..21301050 | 29..377 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:27:48 Download gff for
BO12438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21293803..21294150 | 29..377 | 99 | | Plus |
BO12438.complete Sequence
391 bp assembled on 2006-10-11
GenBank Submission: FJ632442
> BO12438.complete
GAAGTTATCAGTCGACATGTTTAAGCTATCGCTCTGCCTGCTCGCCGCTC
TGATGCTGGCCAATGTGTATGCGGACAACATAAACAAGGATGCCGTGATC
ACCCGCGAGGATGTTAATCCTGCCGACGCCGAGGGCAACTACCAATACGC
CTTCGAGACCAGCAATGGTATTCAGGCCCAGGAGGCCGGAAACGTCAATG
GCATTAGCGGAAGCAGCTCTTACATCTCCCCCGAAGGCGTCCCCATCTCA
CTGACCTACGTCGCCGATGAAAACGGCTTCCAGCCTCAGGGCGATCACCT
TCCCACCGCTCCCCCAATCCCGGAGGCCATCCTCCGCGCCCTGGAATACA
TCGCCGCCCACCCTCCACAGCCCGCAAGCTTTCTAGACCAT
BO12438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr78Cc-RA | 360 | CG7658-PA | 1..357 | 17..373 | 1785 | 100 | Plus |
| Edg78E-RB | 369 | CG7673-PB | 98..327 | 123..352 | 250 | 73.9 | Plus |
| Edg78E-RA | 369 | CG7673-PA | 98..327 | 123..352 | 250 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr78Cc-RA | 522 | CG7658-RA | 42..398 | 17..373 | 1785 | 100 | Plus |
| Edg78E-RB | 546 | CG7673-RB | 174..403 | 123..352 | 250 | 73.9 | Plus |
| Edg78E-RA | 967 | CG7673-RA | 174..403 | 123..352 | 250 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21300703..21301047 | 29..373 | 1725 | 100 | Plus |
| 3L | 28110227 | 3L | 21297327..21297556 | 352..123 | 250 | 73.9 | Minus |
| 3L | 28110227 | 3L | 6161392..6161450 | 248..306 | 190 | 88.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:51:15 has no hits.
BO12438.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:59 Download gff for
BO12438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Cc-RA | 1..360 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:13 Download gff for
BO12438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Cc-RA | 27..393 | 9..377 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:52 Download gff for
BO12438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Cc-RA | 48..398 | 23..375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:00 Download gff for
BO12438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Cc-RA | 27..393 | 9..377 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:42 Download gff for
BO12438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Cc-RA | 48..398 | 23..375 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:42 Download gff for
BO12438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21300700..21301047 | 23..375 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:52 Download gff for
BO12438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21293800..21294147 | 23..375 | 98 | | Plus |
BO12438.pep Sequence
Translation from 16 to 391
> BO12438.pep
MFKLSLCLLAALMLANVYADNINKDAVITREDVNPADAEGNYQYAFETSN
GIQAQEAGNVNGISGSSSYISPEGVPISLTYVADENGFQPQGDHLPTAPP
IPEAILRALEYIAAHPPQPASFLDH
BO12438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr78Cc-PA | 119 | CG7658-PA | 1..119 | 1..119 | 616 | 100 | Plus |
| Edg78E-PB | 122 | CG7673-PB | 1..117 | 1..120 | 375 | 60.8 | Plus |
| Edg78E-PA | 122 | CG7673-PA | 1..117 | 1..120 | 375 | 60.8 | Plus |
| Cpr49Aa-PB | 144 | CG30045-PB | 43..132 | 39..119 | 269 | 56.7 | Plus |
| Cpr67Fa2-PA | 134 | CG18349-PA | 6..117 | 8..116 | 264 | 53 | Plus |
