Clone Sequence Records
BO12439.3prime Sequence
629 bp (628 high quality bases) assembled on 2006-05-08
> BO12439.3prime
ATGGTCTAGAAAGCTTGCGCTACAAATCGCATTGGACTTCTGCACCGGCT
TCTGAATGGGAAGGAAGAGCTTAAACTCCGGCGGCAGCTCGTCCTCCGAG
TAGAGACGATCGGAGAAGTAGACGCGTCTGATGCGGCAATTTGCATGAAT
CTGTACACGGAGTGTCTCCACATAATTGGTGCCGTATGCGCGACGCGTGA
AGTCGGACAGGTTGAACTGGATCTGGTTCCATCCCTCGTCCAATCGCATG
GGCATGGTGCAAATGAAAGGCTTGACACGAGTTGTCGACTGGTAGTTACT
GGCCCTAAACCTTCGCCGCACGTTCTTGTCATCGAGAACCTGAACCTCGA
AGGTGAAGTACTTCTTCATGTTCTTGATGATCATCACCAGGAAGGGCAGC
TTGATGCCCAGCGTCTTCTTCGGATCTGCCGGACATGTTATGAACGTGGT
GCTGACATTGGTGCCGACTATTTCCAACACGAGGCTTTGTATGTCGTTGT
CGGTGATCCGCTTGATGTGTCCATTGCGCACCTTCTTATCCCACAGCTGC
AGTGGCTTTGAGCCAATACTGTACAGAATTGATAGGAATCCCGATTGGAA
AGTGTTTTTGAACATGTCGACTGATAACT
BO12439.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5343-PA | 600 | CG5343-RA | 1..597 | 615..19 | 2985 | 100 | Minus |
CG17118-PA | 846 | CG17118-RA | 385..422 | 231..194 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bug22-RA | 943 | CG5343-RA | 201..801 | 619..19 | 2990 | 99.8 | Minus |
CG17118-RA | 979 | CG17118-RA | 425..496 | 235..164 | 225 | 87.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10430062..10430386 | 19..343 | 1625 | 100 | Plus |
2L | 23513712 | 2L | 10430437..10430718 | 338..619 | 1395 | 99.6 | Plus |
2L | 23513712 | 2L | 10730802..10730873 | 235..164 | 225 | 87.5 | Minus |
2L | 23513712 | 2L | 10730559..10730633 | 412..338 | 180 | 82.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:50:20 has no hits.
BO12439.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:54 Download gff for
BO12439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5343-PA | 1..600 | 15..615 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:43 Download gff for
BO12439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5343-PA | 1..600 | 15..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:53:39 Download gff for
BO12439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5343-RA | 198..807 | 11..624 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:20 Download gff for
BO12439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bug22-RA | 198..807 | 11..624 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:20 Download gff for
BO12439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10430056..10430382 | 11..339 | 98 | <- | Plus |
2L | 10430439..10430721 | 340..624 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:53:39 Download gff for
BO12439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10430056..10430382 | 11..339 | 98 | <- | Plus |
arm_2L | 10430439..10430721 | 340..624 | 98 | | Plus |
BO12439.5prime Sequence
629 bp (628 high quality bases) assembled on 2006-05-08
> BO12439.5prime
GAAGTTATCAGTCGACATGTTCAAAAACACTTTCCAATCGGGATTCCTAT
CAATTCTGTACAGTATTGGCTCAAAGCCACTGCAGCTGTGGGATAAGAAG
GTGCGCAATGGACACATCAAGCGGATCACCGACAACGACATACAAAGCCT
CGTGTTGGAAATAGTCGGCACCAATGTCAGCACCACGTTCATAACATGTC
CGGCAGATCCGAAGAAGACGCTGGGCATCAAGCTGCCCTTCCTGGTGATG
ATCATCAAGAACATGAAGAAGTACTTCACCTTCGAGGTTCAGGTTCTCGA
TGACAAGAACGTGCGGCGAAGGTTTAGGGCCAGTAACTACCAGTCGACAA
CTCGTGTCAAGCCTTTCATTTGCACCATGCCCATGCGATTGGACGAGGGA
TGGAACCAGATCCAGTTCAACCTGTCCGACTTCACGCGTCGCGCATACGG
CACCAATTATGTGGAGACACTCCGTGTACAGATTCATGCAAATTGCCGCA
TCAGACGCGTCTACTTCTCCGATCGTCTCTACTCGGAGGACGAGCTGCCG
CCGGAGTTTAAGCTCTTCCTTCCCATTCAGAAGCCGGTGCAGAAGTCCAA
TGCGATTTGTAGCGCAAGCTTTCTAGACC
BO12439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5343-PA | 600 | CG5343-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
CG17118-PA | 846 | CG17118-RA | 385..422 | 401..438 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bug22-RA | 943 | CG5343-RA | 201..801 | 13..613 | 2990 | 99.8 | Plus |
CG17118-RA | 979 | CG17118-RA | 425..496 | 397..468 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10430062..10430386 | 613..289 | 1625 | 100 | Minus |
2L | 23513712 | 2L | 10430437..10430718 | 294..13 | 1395 | 99.6 | Minus |
2L | 23513712 | 2L | 10730802..10730873 | 397..468 | 225 | 87.5 | Plus |
2L | 23513712 | 2L | 10730559..10730633 | 220..294 | 180 | 82.7 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:22:45 has no hits.
BO12439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:55 Download gff for
BO12439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5343-PA | 1..600 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:45 Download gff for
BO12439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5343-PA | 1..600 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:00 Download gff for
BO12439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5343-RA | 198..807 | 8..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:45 Download gff for
BO12439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bug22-RA | 198..807 | 8..621 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:45 Download gff for
BO12439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10430056..10430382 | 293..621 | 98 | <- | Minus |
2L | 10430439..10430721 | 8..292 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:00 Download gff for
BO12439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10430056..10430382 | 293..621 | 98 | <- | Minus |
arm_2L | 10430439..10430721 | 8..292 | 98 | | Minus |
BO12439.complete Sequence
631 bp assembled on 2006-12-18
GenBank Submission: FJ632443
> BO12439.complete
GAAGTTATCAGTCGACATGTTCAAAAACACTTTCCAATCGGGATTCCTAT
CAATTCTGTACAGTATTGGCTCAAAGCCACTGCAGCTGTGGGATAAGAAG
GTGCGCAATGGACACATCAAGCGGATCACCGACAACGACATACAAAGCCT
CGTGTTGGAAATAGTCGGCACCAATGTCAGCACCACGTTCATAACATGTC
CGGCAGATCCGAAGAAGACGCTGGGCATCAAGCTGCCCTTCCTGGTGATG
ATCATCAAGAACATGAAGAAGTACTTCACCTTCGAGGTTCAGGTTCTCGA
TGACAAGAACGTGCGGCGAAGGTTTAGGGCCAGTAACTACCAGTCGACAA
CTCGTGTCAAGCCTTTCATTTGCACCATGCCCATGCGATTGGACGAGGGA
TGGAACCAGATCCAGTTCAACCTGTCCGACTTCACGCGTCGCGCATACGG
CACCAATTATGTGGAGACACTCCGTGTACAGATTCATGCAAATTGCCGCA
TCAGACGCGTCTACTTCTCCGATCGTCTCTACTCGGAGGACGAGCTGCCG
CCGGAGTTTAAGCTCTTCCTTCCCATTCAGAAGCCGGTGCAGAAGTCCAA
TGCGATTTGTAGCGCAAGCTTTCTAGACCAT
BO12439.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bug22-RA | 600 | CG5343-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
CG17118-RA | 846 | CG17118-PA | 381..452 | 397..468 | 225 | 87.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bug22-RA | 943 | CG5343-RA | 201..801 | 13..613 | 2990 | 99.8 | Plus |
CG17118-RA | 979 | CG17118-RA | 425..496 | 397..468 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10430062..10430386 | 613..289 | 1625 | 100 | Minus |
2L | 23513712 | 2L | 10430437..10430718 | 294..13 | 1395 | 99.6 | Minus |
2L | 23513712 | 2L | 10730802..10730873 | 397..468 | 225 | 87.5 | Plus |
2L | 23513712 | 2L | 10730559..10730633 | 220..294 | 180 | 82.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:19:03 has no hits.
BO12439.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:21 Download gff for
BO12439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5343-RA | 1..600 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:20 Download gff for
BO12439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5343-RA | 194..803 | 8..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:15 Download gff for
BO12439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5343-RA | 210..801 | 22..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:21 Download gff for
BO12439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5343-RA | 194..803 | 8..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:51 Download gff for
BO12439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bug22-RA | 210..801 | 22..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:51 Download gff for
BO12439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10430060..10430382 | 293..615 | 99 | <- | Minus |
2L | 10430439..10430709 | 22..292 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:15 Download gff for
BO12439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10430060..10430382 | 293..615 | 99 | <- | Minus |
arm_2L | 10430439..10430709 | 22..292 | 100 | | Minus |
BO12439.pep Sequence
Translation from 16 to 631
> BO12439.pep
MFKNTFQSGFLSILYSIGSKPLQLWDKKVRNGHIKRITDNDIQSLVLEIV
GTNVSTTFITCPADPKKTLGIKLPFLVMIIKNMKKYFTFEVQVLDDKNVR
RRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYVE
TLRVQIHANCRIRRVYFSDRLYSEDELPPEFKLFLPIQKPVQKSNAICSA
SFLDH
BO12439.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bug22-PA | 199 | CG5343-PA | 1..199 | 1..199 | 1042 | 100 | Plus |
CG17118-PA | 281 | CG17118-PA | 1..183 | 1..183 | 642 | 62.8 | Plus |