Clone BO12439 Report

Search the DGRC for BO12439

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG5343-RA
Protein status:BO12439.pep: validated full length
Sequenced Size:631

Clone Sequence Records

BO12439.3prime Sequence

629 bp (628 high quality bases) assembled on 2006-05-08

> BO12439.3prime
ATGGTCTAGAAAGCTTGCGCTACAAATCGCATTGGACTTCTGCACCGGCT
TCTGAATGGGAAGGAAGAGCTTAAACTCCGGCGGCAGCTCGTCCTCCGAG
TAGAGACGATCGGAGAAGTAGACGCGTCTGATGCGGCAATTTGCATGAAT
CTGTACACGGAGTGTCTCCACATAATTGGTGCCGTATGCGCGACGCGTGA
AGTCGGACAGGTTGAACTGGATCTGGTTCCATCCCTCGTCCAATCGCATG
GGCATGGTGCAAATGAAAGGCTTGACACGAGTTGTCGACTGGTAGTTACT
GGCCCTAAACCTTCGCCGCACGTTCTTGTCATCGAGAACCTGAACCTCGA
AGGTGAAGTACTTCTTCATGTTCTTGATGATCATCACCAGGAAGGGCAGC
TTGATGCCCAGCGTCTTCTTCGGATCTGCCGGACATGTTATGAACGTGGT
GCTGACATTGGTGCCGACTATTTCCAACACGAGGCTTTGTATGTCGTTGT
CGGTGATCCGCTTGATGTGTCCATTGCGCACCTTCTTATCCCACAGCTGC
AGTGGCTTTGAGCCAATACTGTACAGAATTGATAGGAATCCCGATTGGAA
AGTGTTTTTGAACATGTCGACTGATAACT

BO12439.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5343-PA 600 CG5343-RA 1..597 615..19 2985 100 Minus
CG17118-PA 846 CG17118-RA 385..422 231..194 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Bug22-RA 943 CG5343-RA 201..801 619..19 2990 99.8 Minus
CG17118-RA 979 CG17118-RA 425..496 235..164 225 87.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10430062..10430386 19..343 1625 100 Plus
2L 23513712 2L 10430437..10430718 338..619 1395 99.6 Plus
2L 23513712 2L 10730802..10730873 235..164 225 87.5 Minus
2L 23513712 2L 10730559..10730633 412..338 180 82.7 Minus
Blast to na_te.dros performed on 2015-02-12 03:50:20 has no hits.

BO12439.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:54 Download gff for BO12439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5343-PA 1..600 15..615 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:43 Download gff for BO12439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5343-PA 1..600 15..615 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:53:39 Download gff for BO12439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5343-RA 198..807 11..624 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:20 Download gff for BO12439.3prime
Subject Subject Range Query Range Percent Splice Strand
Bug22-RA 198..807 11..624 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:20 Download gff for BO12439.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10430056..10430382 11..339 98 <- Plus
2L 10430439..10430721 340..624 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:53:39 Download gff for BO12439.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10430056..10430382 11..339 98 <- Plus
arm_2L 10430439..10430721 340..624 98   Plus

BO12439.5prime Sequence

629 bp (628 high quality bases) assembled on 2006-05-08

> BO12439.5prime
GAAGTTATCAGTCGACATGTTCAAAAACACTTTCCAATCGGGATTCCTAT
CAATTCTGTACAGTATTGGCTCAAAGCCACTGCAGCTGTGGGATAAGAAG
GTGCGCAATGGACACATCAAGCGGATCACCGACAACGACATACAAAGCCT
CGTGTTGGAAATAGTCGGCACCAATGTCAGCACCACGTTCATAACATGTC
CGGCAGATCCGAAGAAGACGCTGGGCATCAAGCTGCCCTTCCTGGTGATG
ATCATCAAGAACATGAAGAAGTACTTCACCTTCGAGGTTCAGGTTCTCGA
TGACAAGAACGTGCGGCGAAGGTTTAGGGCCAGTAACTACCAGTCGACAA
CTCGTGTCAAGCCTTTCATTTGCACCATGCCCATGCGATTGGACGAGGGA
TGGAACCAGATCCAGTTCAACCTGTCCGACTTCACGCGTCGCGCATACGG
CACCAATTATGTGGAGACACTCCGTGTACAGATTCATGCAAATTGCCGCA
TCAGACGCGTCTACTTCTCCGATCGTCTCTACTCGGAGGACGAGCTGCCG
CCGGAGTTTAAGCTCTTCCTTCCCATTCAGAAGCCGGTGCAGAAGTCCAA
TGCGATTTGTAGCGCAAGCTTTCTAGACC

BO12439.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5343-PA 600 CG5343-RA 1..597 17..613 2985 100 Plus
CG17118-PA 846 CG17118-RA 385..422 401..438 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Bug22-RA 943 CG5343-RA 201..801 13..613 2990 99.8 Plus
CG17118-RA 979 CG17118-RA 425..496 397..468 225 87.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10430062..10430386 613..289 1625 100 Minus
2L 23513712 2L 10430437..10430718 294..13 1395 99.6 Minus
2L 23513712 2L 10730802..10730873 397..468 225 87.5 Plus
2L 23513712 2L 10730559..10730633 220..294 180 82.7 Plus
Blast to na_te.dros performed on 2015-02-04 03:22:45 has no hits.

BO12439.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:35:55 Download gff for BO12439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5343-PA 1..600 17..617 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:45 Download gff for BO12439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5343-PA 1..600 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:53:00 Download gff for BO12439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5343-RA 198..807 8..621 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:45 Download gff for BO12439.5prime
Subject Subject Range Query Range Percent Splice Strand
Bug22-RA 198..807 8..621 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:45 Download gff for BO12439.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10430056..10430382 293..621 98 <- Minus
2L 10430439..10430721 8..292 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:53:00 Download gff for BO12439.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10430056..10430382 293..621 98 <- Minus
arm_2L 10430439..10430721 8..292 98   Minus

BO12439.complete Sequence

631 bp assembled on 2006-12-18

GenBank Submission: FJ632443

> BO12439.complete
GAAGTTATCAGTCGACATGTTCAAAAACACTTTCCAATCGGGATTCCTAT
CAATTCTGTACAGTATTGGCTCAAAGCCACTGCAGCTGTGGGATAAGAAG
GTGCGCAATGGACACATCAAGCGGATCACCGACAACGACATACAAAGCCT
CGTGTTGGAAATAGTCGGCACCAATGTCAGCACCACGTTCATAACATGTC
CGGCAGATCCGAAGAAGACGCTGGGCATCAAGCTGCCCTTCCTGGTGATG
ATCATCAAGAACATGAAGAAGTACTTCACCTTCGAGGTTCAGGTTCTCGA
TGACAAGAACGTGCGGCGAAGGTTTAGGGCCAGTAACTACCAGTCGACAA
CTCGTGTCAAGCCTTTCATTTGCACCATGCCCATGCGATTGGACGAGGGA
TGGAACCAGATCCAGTTCAACCTGTCCGACTTCACGCGTCGCGCATACGG
CACCAATTATGTGGAGACACTCCGTGTACAGATTCATGCAAATTGCCGCA
TCAGACGCGTCTACTTCTCCGATCGTCTCTACTCGGAGGACGAGCTGCCG
CCGGAGTTTAAGCTCTTCCTTCCCATTCAGAAGCCGGTGCAGAAGTCCAA
TGCGATTTGTAGCGCAAGCTTTCTAGACCAT

BO12439.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Bug22-RA 600 CG5343-PA 1..597 17..613 2985 100 Plus
CG17118-RA 846 CG17118-PA 381..452 397..468 225 87.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Bug22-RA 943 CG5343-RA 201..801 13..613 2990 99.8 Plus
CG17118-RA 979 CG17118-RA 425..496 397..468 225 87.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10430062..10430386 613..289 1625 100 Minus
2L 23513712 2L 10430437..10430718 294..13 1395 99.6 Minus
2L 23513712 2L 10730802..10730873 397..468 225 87.5 Plus
2L 23513712 2L 10730559..10730633 220..294 180 82.7 Plus
Blast to na_te.dros performed on 2014-11-28 00:19:03 has no hits.

BO12439.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:21 Download gff for BO12439.complete
Subject Subject Range Query Range Percent Splice Strand
CG5343-RA 1..600 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:20 Download gff for BO12439.complete
Subject Subject Range Query Range Percent Splice Strand
CG5343-RA 194..803 8..621 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:15 Download gff for BO12439.complete
Subject Subject Range Query Range Percent Splice Strand
CG5343-RA 210..801 22..615 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:21 Download gff for BO12439.complete
Subject Subject Range Query Range Percent Splice Strand
CG5343-RA 194..803 8..621 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:51 Download gff for BO12439.complete
Subject Subject Range Query Range Percent Splice Strand
Bug22-RA 210..801 22..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:51 Download gff for BO12439.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10430060..10430382 293..615 99 <- Minus
2L 10430439..10430709 22..292 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:15 Download gff for BO12439.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10430060..10430382 293..615 99 <- Minus
arm_2L 10430439..10430709 22..292 100   Minus

BO12439.pep Sequence

Translation from 16 to 631

> BO12439.pep
MFKNTFQSGFLSILYSIGSKPLQLWDKKVRNGHIKRITDNDIQSLVLEIV
GTNVSTTFITCPADPKKTLGIKLPFLVMIIKNMKKYFTFEVQVLDDKNVR
RRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYVE
TLRVQIHANCRIRRVYFSDRLYSEDELPPEFKLFLPIQKPVQKSNAICSA
SFLDH

BO12439.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Bug22-PA 199 CG5343-PA 1..199 1..199 1042 100 Plus
CG17118-PA 281 CG17118-PA 1..183 1..183 642 62.8 Plus