Clone BO12443 Report

Search the DGRC for BO12443

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:124
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG5861-RA
Protein status:BO12443.pep: validated full length
Sequenced Size:715

Clone Sequence Records

BO12443.3prime Sequence

713 bp (712 high quality bases) assembled on 2006-05-08

> BO12443.3prime
ATGGTCTAGAAAGCTTGCAATTCCGATCTGCTGGGCCAGACCCGAATAGA
TGTGCAGCGTGCAGAATCCAATGACGGCCGCCACCAGCGCTTTAACAGCC
ACCGTTAGCCAAGGTCCAATGGTCAGAATGTGGAGCATGCCCTCCAGCCA
GACGCCTTTGAAGACAGTCACCGCCAGAAGTAGACTAACCAGCGGCTTTA
ATGCCTTGTTCAAATCGTGACGGGTGAAGAGCCAGATCAGGGTGGCCGTA
GTGATGTGCTGCACCAGAAGCACGTTCGATTCCAGACACTTGAGGATGTA
GATCCAACTGAACTCGGTGCCTCGGGCACCCACCCACAGCATGATACCTC
GGGAAAGAATCACTTCGGCGGTGGCCCATCCAAGTCCAGCCGTTATGAGC
TTTGAGTGGCCCTTGCCGGGTATGCGACTCAAGATTAGGGCGAATCCAAG
CAGATCGGCGATGTCCATGCTGCAGCGAAGAATCTCCGCAAAGAAGTTGA
ACTCGCCGCTGGAGGATGGAGCGTCCGAGTAGAAGAATGTGGCCAGCACC
AGCATCTTGACGAGCTGTGTGAATATATAAATGCCTCCCGCCTGCACGCA
CTTCCAGAAGGCTCCATATTCTGATAGGCCGGAGTATTTATAGGTGAAGT
AGTACGGCGTCAGCAGGGCCACACAATTTCCAAAGTGATACAGTGTCATG
TCGACTGATAACT

BO12443.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-PA 684 CG5861-RA 1..681 699..19 3405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-RA 1126 CG5861-RA 285..965 699..19 3405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16305962..16306320 19..377 1795 100 Plus
2L 23513712 2L 16306693..16306832 486..625 700 100 Plus
2L 23513712 2L 16306514..16306624 377..487 555 100 Plus
2L 23513712 2L 16306941..16307014 626..699 370 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:44:17 has no hits.

BO12443.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:00 Download gff for BO12443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-PA 1..684 15..699 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:52 Download gff for BO12443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-PA 1..684 15..699 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:26:15 Download gff for BO12443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 280..970 13..706 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:50 Download gff for BO12443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 280..970 13..706 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:50 Download gff for BO12443.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16305957..16306320 13..377 99 <- Plus
2L 16306515..16306623 378..486 100 <- Plus
2L 16306694..16306832 487..625 100 <- Plus
2L 16306941..16307019 626..706 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:26:15 Download gff for BO12443.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16305957..16306320 13..377 99 <- Plus
arm_2L 16306515..16306623 378..486 100 <- Plus
arm_2L 16306694..16306832 487..625 100 <- Plus
arm_2L 16306941..16307019 626..706 95   Plus

BO12443.5prime Sequence

713 bp (712 high quality bases) assembled on 2006-05-08

> BO12443.5prime
GAAGTTATCACCCTACATGACACTGTATCACTTTGGAAATTGTGTGGCCC
TGCTGACGCCGTACTACTTCACCTATAAATACTCCGGCCTATCAGAATAT
GGAGCCTTCTGGAAGTGCGTGCAGGCGGGAGGCATTTATATATTCACACA
GCTCGTCAAGATGCTGGTGCTGGCCACATTCTTCTACTCGGACGCTCCAT
CCTCCAGCGGCGAGTTCAACTTCTTTGCGGAGATTCTTCGCTGCAGCATG
GACATCGCCGATCTGCTTGGATTCGCCCTAATCTTGAGTCGCATACCCGG
CAAGGGCCACTCAAAGCTCATAACGGCTGGACTTGGATGGGCCACCGCCG
AAGTGATTCTTTCCCGAGGTATCATGCTGTGGGTGGGTGCCCGAGGCACC
GAGTTCAGTTGGATCTACATCCTCAAGTGTCTGGAATCGAACGTGCTTCT
GGTGCAGCACATCACTACGGCCACCCTGATCTGGCTCTTCACCCGTCACG
ATTTGAACAAGGCATTAAAGCCGCTGGTTAGTCTACTTCTGGCGGTGACT
GTCTTCAAAGGCGTCTGGCTGGAGGGCATGCTCCACATTCTGACCATTGG
ACCTTGGCTAACGGTGGCTGTTAAAGCGCTGGTGGCGGCCGTCATTGGAT
TCTGCACGCTGCACATCTATTCGGGTCTGGCCCAGCAGATCGGAATTGCA
AGCTTTCTAGACC

BO12443.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-PA 684 CG5861-RA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-RA 1126 CG5861-RA 285..965 17..697 3405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16305962..16306320 697..339 1795 100 Minus
2L 23513712 2L 16306693..16306832 230..91 700 100 Minus
2L 23513712 2L 16306514..16306624 339..229 555 100 Minus
2L 23513712 2L 16306941..16307014 90..17 370 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:16:01 has no hits.

BO12443.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:01 Download gff for BO12443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-PA 1..684 17..701 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:54 Download gff for BO12443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-PA 1..684 17..701 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:43:27 Download gff for BO12443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 285..970 17..703 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:19 Download gff for BO12443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 285..970 17..703 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:19 Download gff for BO12443.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16305957..16306320 339..703 99 <- Minus
2L 16306515..16306623 230..338 100 <- Minus
2L 16306694..16306832 91..229 100 <- Minus
2L 16306941..16307014 17..90 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:43:27 Download gff for BO12443.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16305957..16306320 339..703 99 <- Minus
arm_2L 16306515..16306623 230..338 100 <- Minus
arm_2L 16306694..16306832 91..229 100 <- Minus
arm_2L 16306941..16307014 17..90 100   Minus

BO12443.complete Sequence

715 bp assembled on 2006-10-11

GenBank Submission: FJ632444

> BO12443.complete
GAAGTTATCAGTCGACATGACACTGTATCACTTTGGAAATTGTGTGGCCC
TGCTGACGCCGTACTACTTCACCTATAAATACTCCGGCCTATCAGAATAT
GGAGCCTTCTGGAAGTGCGTGCAGGCGGGAGGCATTTATATATTCACACA
GCTCGTCAAGATGCTGGTGCTGGCCACATTCTTCTACTCGGACGCTCCAT
CCTCCAGCGGCGAGTTCAACTTCTTTGCGGAGATTCTTCGCTGCAGCATG
GACATCGCCGATCTGCTTGGATTCGCCCTAATCTTGAGTCGCATACCCGG
CAAGGGCCACTCAAAGCTCATAACGGCTGGACTTGGATGGGCCACCGCCG
AAGTGATTCTTTCCCGAGGTATCATGCTGTGGGTGGGTGCCCGAGGCACC
GAGTTCAGTTGGATCTACATCCTCAAGTGTCTGGAATCGAACGTGCTTCT
GGTGCAGCACATCACTACGGCCACCCTGATCTGGCTCTTCACCCGTCACG
ATTTGAACAAGGCATTAAAGCCGCTGGTTAGTCTACTTCTGGCGGTGACT
GTCTTCAAAGGCGTCTGGCTGGAGGGCATGCTCCACATTCTGACCATTGG
ACCTTGGCTAACGGTGGCTGTTAAAGCGCTGGTGGCGGCCGTCATTGGAT
TCTGCACGCTGCACATCTATTCGGGTCTGGCCCAGCAGATCGGAATTGCA
AGCTTTCTAGACCAT

BO12443.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-RA 684 CG5861-PA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-RA 1126 CG5861-RA 285..965 17..697 3405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16305962..16306320 697..339 1795 100 Minus
2L 23513712 2L 16306693..16306832 230..91 700 100 Minus
2L 23513712 2L 16306514..16306624 339..229 555 100 Minus
2L 23513712 2L 16306941..16307014 90..17 370 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:11:53 has no hits.

BO12443.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:00 Download gff for BO12443.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 1..684 17..701 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:14 Download gff for BO12443.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 257..947 10..703 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:22 Download gff for BO12443.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 285..965 17..699 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:01 Download gff for BO12443.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 257..947 10..703 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:08 Download gff for BO12443.complete
Subject Subject Range Query Range Percent Splice Strand
CG5861-RA 285..965 17..699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:08 Download gff for BO12443.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16305960..16306320 339..699 99 <- Minus
2L 16306515..16306623 230..338 100 <- Minus
2L 16306694..16306832 91..229 100 <- Minus
2L 16306941..16307014 17..90 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:22 Download gff for BO12443.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16305960..16306320 339..699 99 <- Minus
arm_2L 16306515..16306623 230..338 100 <- Minus
arm_2L 16306694..16306832 91..229 100 <- Minus
arm_2L 16306941..16307014 17..90 100   Minus

BO12443.pep Sequence

Translation from 16 to 715

> BO12443.pep
MTLYHFGNCVALLTPYYFTYKYSGLSEYGAFWKCVQAGGIYIFTQLVKML
VLATFFYSDAPSSSGEFNFFAEILRCSMDIADLLGFALILSRIPGKGHSK
LITAGLGWATAEVILSRGIMLWVGARGTEFSWIYILKCLESNVLLVQHIT
TATLIWLFTRHDLNKALKPLVSLLLAVTVFKGVWLEGMLHILTIGPWLTV
AVKALVAAVIGFCTLHIYSGLAQQIGIASFLDH

BO12443.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5861-PA 227 CG5861-PA 1..227 1..227 1183 100 Plus