Clone Sequence Records
BO12443.3prime Sequence
713 bp (712 high quality bases) assembled on 2006-05-08
> BO12443.3prime
ATGGTCTAGAAAGCTTGCAATTCCGATCTGCTGGGCCAGACCCGAATAGA
TGTGCAGCGTGCAGAATCCAATGACGGCCGCCACCAGCGCTTTAACAGCC
ACCGTTAGCCAAGGTCCAATGGTCAGAATGTGGAGCATGCCCTCCAGCCA
GACGCCTTTGAAGACAGTCACCGCCAGAAGTAGACTAACCAGCGGCTTTA
ATGCCTTGTTCAAATCGTGACGGGTGAAGAGCCAGATCAGGGTGGCCGTA
GTGATGTGCTGCACCAGAAGCACGTTCGATTCCAGACACTTGAGGATGTA
GATCCAACTGAACTCGGTGCCTCGGGCACCCACCCACAGCATGATACCTC
GGGAAAGAATCACTTCGGCGGTGGCCCATCCAAGTCCAGCCGTTATGAGC
TTTGAGTGGCCCTTGCCGGGTATGCGACTCAAGATTAGGGCGAATCCAAG
CAGATCGGCGATGTCCATGCTGCAGCGAAGAATCTCCGCAAAGAAGTTGA
ACTCGCCGCTGGAGGATGGAGCGTCCGAGTAGAAGAATGTGGCCAGCACC
AGCATCTTGACGAGCTGTGTGAATATATAAATGCCTCCCGCCTGCACGCA
CTTCCAGAAGGCTCCATATTCTGATAGGCCGGAGTATTTATAGGTGAAGT
AGTACGGCGTCAGCAGGGCCACACAATTTCCAAAGTGATACAGTGTCATG
TCGACTGATAACT
BO12443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-PA | 684 | CG5861-RA | 1..681 | 699..19 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-RA | 1126 | CG5861-RA | 285..965 | 699..19 | 3405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16305962..16306320 | 19..377 | 1795 | 100 | Plus |
2L | 23513712 | 2L | 16306693..16306832 | 486..625 | 700 | 100 | Plus |
2L | 23513712 | 2L | 16306514..16306624 | 377..487 | 555 | 100 | Plus |
2L | 23513712 | 2L | 16306941..16307014 | 626..699 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:44:17 has no hits.
BO12443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:00 Download gff for
BO12443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-PA | 1..684 | 15..699 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:52 Download gff for
BO12443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-PA | 1..684 | 15..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:26:15 Download gff for
BO12443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 280..970 | 13..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:50 Download gff for
BO12443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 280..970 | 13..706 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:50 Download gff for
BO12443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16305957..16306320 | 13..377 | 99 | <- | Plus |
2L | 16306515..16306623 | 378..486 | 100 | <- | Plus |
2L | 16306694..16306832 | 487..625 | 100 | <- | Plus |
2L | 16306941..16307019 | 626..706 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:26:15 Download gff for
BO12443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16305957..16306320 | 13..377 | 99 | <- | Plus |
arm_2L | 16306515..16306623 | 378..486 | 100 | <- | Plus |
arm_2L | 16306694..16306832 | 487..625 | 100 | <- | Plus |
arm_2L | 16306941..16307019 | 626..706 | 95 | | Plus |
BO12443.5prime Sequence
713 bp (712 high quality bases) assembled on 2006-05-08
> BO12443.5prime
GAAGTTATCACCCTACATGACACTGTATCACTTTGGAAATTGTGTGGCCC
TGCTGACGCCGTACTACTTCACCTATAAATACTCCGGCCTATCAGAATAT
GGAGCCTTCTGGAAGTGCGTGCAGGCGGGAGGCATTTATATATTCACACA
GCTCGTCAAGATGCTGGTGCTGGCCACATTCTTCTACTCGGACGCTCCAT
CCTCCAGCGGCGAGTTCAACTTCTTTGCGGAGATTCTTCGCTGCAGCATG
GACATCGCCGATCTGCTTGGATTCGCCCTAATCTTGAGTCGCATACCCGG
CAAGGGCCACTCAAAGCTCATAACGGCTGGACTTGGATGGGCCACCGCCG
AAGTGATTCTTTCCCGAGGTATCATGCTGTGGGTGGGTGCCCGAGGCACC
GAGTTCAGTTGGATCTACATCCTCAAGTGTCTGGAATCGAACGTGCTTCT
GGTGCAGCACATCACTACGGCCACCCTGATCTGGCTCTTCACCCGTCACG
ATTTGAACAAGGCATTAAAGCCGCTGGTTAGTCTACTTCTGGCGGTGACT
GTCTTCAAAGGCGTCTGGCTGGAGGGCATGCTCCACATTCTGACCATTGG
ACCTTGGCTAACGGTGGCTGTTAAAGCGCTGGTGGCGGCCGTCATTGGAT
TCTGCACGCTGCACATCTATTCGGGTCTGGCCCAGCAGATCGGAATTGCA
AGCTTTCTAGACC
BO12443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-PA | 684 | CG5861-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-RA | 1126 | CG5861-RA | 285..965 | 17..697 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16305962..16306320 | 697..339 | 1795 | 100 | Minus |
2L | 23513712 | 2L | 16306693..16306832 | 230..91 | 700 | 100 | Minus |
2L | 23513712 | 2L | 16306514..16306624 | 339..229 | 555 | 100 | Minus |
2L | 23513712 | 2L | 16306941..16307014 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:16:01 has no hits.
BO12443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:01 Download gff for
BO12443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-PA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:54 Download gff for
BO12443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-PA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:43:27 Download gff for
BO12443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 285..970 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:19 Download gff for
BO12443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 285..970 | 17..703 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:19 Download gff for
BO12443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16305957..16306320 | 339..703 | 99 | <- | Minus |
2L | 16306515..16306623 | 230..338 | 100 | <- | Minus |
2L | 16306694..16306832 | 91..229 | 100 | <- | Minus |
2L | 16306941..16307014 | 17..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:43:27 Download gff for
BO12443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16305957..16306320 | 339..703 | 99 | <- | Minus |
arm_2L | 16306515..16306623 | 230..338 | 100 | <- | Minus |
arm_2L | 16306694..16306832 | 91..229 | 100 | <- | Minus |
arm_2L | 16306941..16307014 | 17..90 | 100 | | Minus |
BO12443.complete Sequence
715 bp assembled on 2006-10-11
GenBank Submission: FJ632444
> BO12443.complete
GAAGTTATCAGTCGACATGACACTGTATCACTTTGGAAATTGTGTGGCCC
TGCTGACGCCGTACTACTTCACCTATAAATACTCCGGCCTATCAGAATAT
GGAGCCTTCTGGAAGTGCGTGCAGGCGGGAGGCATTTATATATTCACACA
GCTCGTCAAGATGCTGGTGCTGGCCACATTCTTCTACTCGGACGCTCCAT
CCTCCAGCGGCGAGTTCAACTTCTTTGCGGAGATTCTTCGCTGCAGCATG
GACATCGCCGATCTGCTTGGATTCGCCCTAATCTTGAGTCGCATACCCGG
CAAGGGCCACTCAAAGCTCATAACGGCTGGACTTGGATGGGCCACCGCCG
AAGTGATTCTTTCCCGAGGTATCATGCTGTGGGTGGGTGCCCGAGGCACC
GAGTTCAGTTGGATCTACATCCTCAAGTGTCTGGAATCGAACGTGCTTCT
GGTGCAGCACATCACTACGGCCACCCTGATCTGGCTCTTCACCCGTCACG
ATTTGAACAAGGCATTAAAGCCGCTGGTTAGTCTACTTCTGGCGGTGACT
GTCTTCAAAGGCGTCTGGCTGGAGGGCATGCTCCACATTCTGACCATTGG
ACCTTGGCTAACGGTGGCTGTTAAAGCGCTGGTGGCGGCCGTCATTGGAT
TCTGCACGCTGCACATCTATTCGGGTCTGGCCCAGCAGATCGGAATTGCA
AGCTTTCTAGACCAT
BO12443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-RA | 684 | CG5861-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-RA | 1126 | CG5861-RA | 285..965 | 17..697 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16305962..16306320 | 697..339 | 1795 | 100 | Minus |
2L | 23513712 | 2L | 16306693..16306832 | 230..91 | 700 | 100 | Minus |
2L | 23513712 | 2L | 16306514..16306624 | 339..229 | 555 | 100 | Minus |
2L | 23513712 | 2L | 16306941..16307014 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:11:53 has no hits.
BO12443.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:00 Download gff for
BO12443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:14 Download gff for
BO12443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 257..947 | 10..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:22 Download gff for
BO12443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 285..965 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:01 Download gff for
BO12443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 257..947 | 10..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:08 Download gff for
BO12443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5861-RA | 285..965 | 17..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:08 Download gff for
BO12443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16305960..16306320 | 339..699 | 99 | <- | Minus |
2L | 16306515..16306623 | 230..338 | 100 | <- | Minus |
2L | 16306694..16306832 | 91..229 | 100 | <- | Minus |
2L | 16306941..16307014 | 17..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:22 Download gff for
BO12443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16305960..16306320 | 339..699 | 99 | <- | Minus |
arm_2L | 16306515..16306623 | 230..338 | 100 | <- | Minus |
arm_2L | 16306694..16306832 | 91..229 | 100 | <- | Minus |
arm_2L | 16306941..16307014 | 17..90 | 100 | | Minus |
BO12443.pep Sequence
Translation from 16 to 715
> BO12443.pep
MTLYHFGNCVALLTPYYFTYKYSGLSEYGAFWKCVQAGGIYIFTQLVKML
VLATFFYSDAPSSSGEFNFFAEILRCSMDIADLLGFALILSRIPGKGHSK
LITAGLGWATAEVILSRGIMLWVGARGTEFSWIYILKCLESNVLLVQHIT
TATLIWLFTRHDLNKALKPLVSLLLAVTVFKGVWLEGMLHILTIGPWLTV
AVKALVAAVIGFCTLHIYSGLAQQIGIASFLDH
BO12443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5861-PA | 227 | CG5861-PA | 1..227 | 1..227 | 1183 | 100 | Plus |