Clone Sequence Records
BO12445.complete Sequence
2023 bp assembled on 2010-04-13
GenBank Submission: KX796536
> BO12445.complete
GAAGTTATCAGTCGACATGGAGTTCGACGCCACGTACCACGAGATCTGCT
CCGCGCAGACGGTTCAGTCGGAGAGGAGGGGATTCTTCAACGAATTTTGC
GTGGACGTGCGTGATGCATGTGGCGACAAGTGGCTGCGCAACTACTTTGG
CAAACTGAAGTCCAATGCAGCCCGAGTTCTGTCCATTTTCAGCGATCGCG
AGGTGTGCGATCCTGTGCTGGGTGTCCTGGAGCATGTACAGCCGGTGTTC
AAGCAGAAGGATGCCCTCTTCTCGGCCCAGCGACGTGCACAGGCGGATAA
GCTCTACCTGATGAGCGGCAGTGGCGACGGCGAGGAGAGCAGGGAGCTGC
TGCAGCAGGCTCTAATGGCCGCCAATCTGGCCGTGATGCGGGCTCCCGAC
CGCAATGCAGATCCTGTCCTCGATGAGGGCCTCACCTTGGCATTGGCCTA
CAGATCGAGGGCTTCCATATTGATCCGCTTGGGCGAGGGGGAGGCAGCAT
TGAATGACCTCAAGCTGGCCATCAACTTTGGACTGGAGCTCAAGTCCAGT
GTGGATTACTACTTAAAGATGGCCAAAGCCTATGCAGTCATGGGAGAACC
TGCCCGCGCTGAGATCTCATTGAAGATAGCCGAGAAAATGCCTGGCTGTG
ATGCCACCCACATCGCACTGTGCCGCAAGGAACTATCATCAGTAAAGCCG
AAACCCAAGGAAGCCACCTCGGAACAGGTGCCACAACTGGCACATGGCGA
GAGTGCCGAACTAGTTGGTGCGTCCAAGGTGGTGAGGCTGGTGGAGACCA
AGGACAAGGGTCGTTTTGTGGTGGCCAACGAGGGTCTGAGAACCGGCGAC
GTTCTGCTCTTCGAGGAGCCAGTGGCCGCCTGTTTGGAGCCCAGTTACTT
TGGCACTCATTGTCATCATTGCTTCAAGAGGCTGCACACTCCCGTTTCCT
GTCTCCACTGCTCGGGAATCGCCTTCTGCTCCGCCCAGTGCATGGGCGAG
GCCTGCTCCAGTTACCATCGCTTCGAGTGCGAGTATATGGACTTGATGAT
CGGTTCTGGCATGTCCATCCTGTGCTTCATCGCGCTGCGCATCTTCACAC
AGGCGCCCAGCTTGGAGCAGGGCTTGGCCACCGCCAATCTGCTCTTCGAG
CACTTGTGCTCCCACGAGGAGGACCGCCAGCCGGACGACTACTTGCGGCG
AGCTCTGATGTCTGGCTTCCTGTTGCGCATTCTACAGAAGTCGCTGTACT
TCGGACGTCGCAAAACTGAGGGAGTGAATCCAACTGCGGTGGAGCTGCAG
GTGGCCACCGCTTTGCTGGGCCTGCTGCAGGTGCTCCAGTACAATGCCCA
CCAGATCTATCAAACCCAAGTGACCGAGGAGCATCGCTTCGACGGCAGTA
AGACGGTGTATCTGGCCGCAGGACTTTATGGTACTGGTTCCTACTTCAAT
CACGAGTGCTGGCCCAGCACCGCTTGTCATTTTGTTGGCAAGAAGCTGGT
CCTCACAGCCACCAGGCCGCATCGTGCCAATGAATTGGTGGCCGTGAACT
ACGGACCCATTTTCATCAAAAACAACTTGAAGGAGAGACAGCGATCTCTG
CGAGGACGCTACTCCTTCAGCTGCAGCTGCATGGCCTGCCAGGAGAACTG
GCCACTGCTCCAGAAACTGGACAAGCAAGTGCGATTCTGGTGCACCTCAG
CCAACTGCTCTAATTTGCTCAAGTTCCCCAAGGATTTGGCAAAGGATGTG
CGTTGTCCTCGCTGCCGCAAGAACATCTCACTCAAGGAGAGCGTAGCCAA
GATGATCAAGATCGAGGAGCTGTATCGAGAGGCTGCGCGAGCCATGGAGG
CCCAGAAAACCGTGGAGGCCATAGAACTTTTCAAGGAGTCGCTCGATATG
TTCTTCCAAGTGGCTGCACTGCCTCACAAGGACACCATAGTGGCGCAGCA
GTCGCTGCATAAGTGTTTGTCCGATACGGGAACCACATTTAAAAAGGAAG
GGAAAGCAAGCTTTCTAGACCAT
BO12445.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smyd4-RA | 1992 | CG14122-PA | 1..1989 | 17..2005 | 9945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smyd4-RA | 2165 | CG14122-RA | 109..2104 | 10..2005 | 9950 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12401250..12401827 | 587..10 | 2860 | 99.7 | Minus |
| 3L | 28110227 | 3L | 12400252..12400790 | 1467..929 | 2695 | 100 | Minus |
| 3L | 28110227 | 3L | 12400848..12401194 | 931..585 | 1735 | 100 | Minus |
| 3L | 28110227 | 3L | 12399600..12399916 | 2005..1689 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 12399968..12400194 | 1692..1466 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:25:38 has no hits.
BO12445.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:47 Download gff for
BO12445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14122-RA | 97..2085 | 17..2007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:44 Download gff for
BO12445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smyd4-RA | 116..2104 | 17..2007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:25 Download gff for
BO12445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smyd4-RA | 116..2104 | 17..2007 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:25 Download gff for
BO12445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12399597..12399915 | 1690..2007 | 99 | <- | Minus |
| 3L | 12399971..12400192 | 1468..1689 | 100 | <- | Minus |
| 3L | 12400252..12400788 | 931..1467 | 100 | <- | Minus |
| 3L | 12400849..12401191 | 588..930 | 100 | <- | Minus |
| 3L | 12401250..12401820 | 17..587 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:44 Download gff for
BO12445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12392697..12393015 | 1690..2007 | 99 | <- | Minus |
| arm_3L | 12393071..12393292 | 1468..1689 | 100 | <- | Minus |
| arm_3L | 12393352..12393888 | 931..1467 | 100 | <- | Minus |
| arm_3L | 12393949..12394291 | 588..930 | 100 | <- | Minus |
| arm_3L | 12394350..12394920 | 17..587 | 100 | | Minus |
BO12445.3prime Sequence
877 bp (866 high quality bases) assembled on 2006-05-08
> BO12445.3prime
ATGGTCTAGAAAGCTTGCTTTCCCTTCCTTTTTAAATGTGGTTCCCGTAT
CGGACAAACACTTATGCAGCGACTGCTGCGCCACTATGGTGTCCTTGTGA
GGCAGTGCAGCCACTTGGAAGAACATATCGAGCGACTCCTTGAAAAGTTC
TATGGCCTCCACGGTTTTCTGGGCCTCCATGGCTCGCGCAGCCTCTCGAT
ACAGCTCCTCGATCTTGATCATCTTGGCTACGCTCTCCTTGAGTGAGATG
TTCTTGCGGCAGCGAGGACAACGCACATCCTTTGCCAAATCCTTGGGGAA
CTTGAGCAAATTAGAGCAGTTGGCTGAGGTGCACCAGAATCGCACTTGCT
TGTCCAGTTTCTGGAGCAGTGGCCAGTTCTCCTGGCAGGCCATGCAGCTG
CAGCTGAAGGAGTAGCGTCCTCGCAGAGATCGCTGTCTCTCCTTCAAGTT
GTTTTTGATGAAAATGGGTCCGTAGTTCACGGCCACCAATTCATTGGCAC
GATGCGGCCTGGTGGCTGTGAGGACCAGCTTCTTGCCAACAAAATGACAA
GCGGTGCTGGGCCAGCACTCGTGATTGAAGTAGGAACCAGTACCATAAAG
TCCTGCGGCCAGATACACCGTCTTACTGCCGTCGAAGCGATGCTCCTCGG
TCACTTGGGTTTGATAGATCTGGTGGGCATTGTACTGGAGCACCTGCAGC
AGGCCCAGCAAAGCGGTGGCCACCTGCAGCTCCACCGCAGTTGGATTCAC
TCCCTCAGTTTTGCGACGTCCGAAGTACAGCGACTTCTGTAGAATGCGCA
ACAGGAAGCCAGACATCAGAGCTCGCCGCAAGTAGTCGTCCGGCTGGCGG
TCCTCCTCGTGGGAGCACAAGTGCTCG
BO12445.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14122-PA | 1992 | CG14122-RA | 1131..1989 | 877..19 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smyd4-RA | 2165 | CG14122-RA | 1246..2104 | 877..19 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12400252..12400572 | 557..877 | 1605 | 100 | Plus |
| 3L | 28110227 | 3L | 12399600..12399916 | 19..335 | 1585 | 100 | Plus |
| 3L | 28110227 | 3L | 12399968..12400194 | 332..558 | 1135 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:50:58 has no hits.
BO12445.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:01 Download gff for
BO12445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14122-PA | 1131..1992 | 16..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:55 Download gff for
BO12445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14122-PA | 1131..1992 | 16..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:26:48 Download gff for
BO12445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smyd4-RA | 1246..2108 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:18:47 Download gff for
BO12445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smyd4-RA | 1246..2108 | 15..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:18:47 Download gff for
BO12445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12399596..12399915 | 15..334 | 99 | <- | Plus |
| 3L | 12399971..12400192 | 335..556 | 100 | <- | Plus |
| 3L | 12400252..12400572 | 557..877 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:26:48 Download gff for
BO12445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12392696..12393015 | 15..334 | 99 | <- | Plus |
| arm_3L | 12393071..12393292 | 335..556 | 100 | <- | Plus |
| arm_3L | 12393352..12393672 | 557..877 | 100 | | Plus |
BO12445.5prime Sequence
821 bp (812 high quality bases) assembled on 2006-05-08
> BO12445.5prime
GAAGTTATCAGCCGACATGGAGTTCGACGCCACGTACCACGAGATCTGCT
CCGCGCAGACGGTTCAGTCGGAGAGGAGGGGATTCTTCAACGAATTTTGC
GTGGACGTGCGTGATGCATGTGGCGACAAGTGGCTGCGCAACTACTTTGG
CAAACTGAAGTCCAATGCAGCCCGAGTTCTGTCCATTTTCAGCGATCGCG
AGGTGTGCGATCCTGTGCTGGGTGTCCTGGAGCATGTACAGCCGGTGTTC
AAGCAGAAGGATGCCCTCTTCTCGGCCCAGCGACGTGCACAGGCGGATAA
GCTCTACCTGATGAGCGGCAGTGGCGACGGCGAGGAGAGCAGGGAGCTGC
TGCAGCAGGCTCTAATGGCCGCCAATCTGGCCGTGATGCGGGCTCCCGAC
CGCAATGCAGATCCTGTCCTCGATGAGGGCCTCACCTTGGCATTGGCCTA
CAGATCGAGGGCTTCCATATTGATCCGCTTGGGCGAGGGGGAGGCAGCAT
TGAATGACCTCAAGCTGGCCATCAACTTTGGACTGGAGCTCAAGTCCAGT
GTGGATTACTACTTAAAGATGGCCAAAGCCTATGCAGTCATGGGAGAACC
TGCCCGCGCTGAGATCTCATTGAAGATAGCCGAGAAAATGCCTGGCTGTG
ATGCCACCCACATCGCACTGTGCCGCAAGGAACTATCATCAGTAAAGCCG
AAACCCAAGGAAGCCACCTCGGAACAGGTGCCACAACTGGCACATGGCGA
GAGTGCCGAACTAGTTGGTGCGTCCAAGGTGGTGAGGCTGGTGGAGACCA
AGGACAAGGGTCGTTTTGTGG
BO12445.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14122-PA | 1992 | CG14122-RA | 1..805 | 17..821 | 4025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smyd4-RA | 2165 | CG14122-RA | 116..920 | 17..821 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12401250..12401820 | 587..17 | 2855 | 100 | Minus |
| 3L | 28110227 | 3L | 12400958..12401194 | 821..585 | 1185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:56:19 has no hits.
BO12445.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:02 Download gff for
BO12445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14122-PA | 1..805 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:57 Download gff for
BO12445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14122-PA | 1..805 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:57:53 Download gff for
BO12445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smyd4-RA | 104..920 | 5..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:26:57 Download gff for
BO12445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smyd4-RA | 104..920 | 5..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:26:57 Download gff for
BO12445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12400958..12401191 | 588..821 | 100 | <- | Minus |
| 3L | 12401250..12401831 | 5..587 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:57:53 Download gff for
BO12445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12394058..12394291 | 588..821 | 100 | <- | Minus |
| arm_3L | 12394350..12394931 | 5..587 | 99 | | Minus |
BO12445.pep Sequence
Translation from 16 to 2023
> BO12445.pep
MEFDATYHEICSAQTVQSERRGFFNEFCVDVRDACGDKWLRNYFGKLKSN
AARVLSIFSDREVCDPVLGVLEHVQPVFKQKDALFSAQRRAQADKLYLMS
GSGDGEESRELLQQALMAANLAVMRAPDRNADPVLDEGLTLALAYRSRAS
ILIRLGEGEAALNDLKLAINFGLELKSSVDYYLKMAKAYAVMGEPARAEI
SLKIAEKMPGCDATHIALCRKELSSVKPKPKEATSEQVPQLAHGESAELV
GASKVVRLVETKDKGRFVVANEGLRTGDVLLFEEPVAACLEPSYFGTHCH
HCFKRLHTPVSCLHCSGIAFCSAQCMGEACSSYHRFECEYMDLMIGSGMS
ILCFIALRIFTQAPSLEQGLATANLLFEHLCSHEEDRQPDDYLRRALMSG
FLLRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVLQYNAHQIYQT
QVTEEHRFDGSKTVYLAAGLYGTGSYFNHECWPSTACHFVGKKLVLTATR
PHRANELVAVNYGPIFIKNNLKERQRSLRGRYSFSCSCMACQENWPLLQK
LDKQVRFWCTSANCSNLLKFPKDLAKDVRCPRCRKNISLKESVAKMIKIE
ELYREAARAMEAQKTVEAIELFKESLDMFFQVAALPHKDTIVAQQSLHKC
LSDTGTTFKKEGKASFLDH
BO12445.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smyd4-PA | 663 | CG14122-PA | 1..663 | 1..663 | 3455 | 100 | Plus |
| CG7759-PA | 660 | CG7759-PA | 2..657 | 14..658 | 557 | 25.7 | Plus |
| CG8378-PA | 573 | CG8378-PA | 171..497 | 240..547 | 258 | 26.8 | Plus |
