Clone Sequence Records
BO12446.complete Sequence
2383 bp assembled on 2009-09-17
GenBank Submission: FJ632445
> BO12446.complete
GAAGTTATCAGTCGACATGGAGACTTGTGAAGTGGAGGGAGAGGCGGAGA
CGCTGGTGAGACGCTTCTCCGTCAGCTGCGAGCAATTGGAGCTGGAAGCG
AGAATTCAGCAAAGCGCTCTGTCCACCTACCATCGCTTGGATGCGGTCAA
CGGGCTGTCCACCAGCGAGGCAGATGCCCAGGAGTGGCTGTGTTGCGCCG
TCTACAGCGAACTGCAGCGCTCGAAGATGCGCGATATTAGGGAGTCCATC
AACGAGGCAAACGATTCGGTGGCCAAGAACTGCTGCTGGAACGTGTCACT
AACCCGTCTGCTGCGCAGCTTTAAGATGAACGTGTCCCAGTTTCTACGCC
GCATGGAGCACTGGAATTGGCTGACCCAAAACGAGAACACTTTCCAGCTG
GAGGTTGAGGAACTGCGTTGTCGACTTGGTATTACTTCGACGCTGCTGCG
GCATTATAAGCACATCTTTCGGAGCCTGTTCGTTCACCCCGGCAAGGGTG
CGGACCCGGGTGCCGCGAATCACTACCAAGCGCTGTATGAGTTCGGTTGG
TTGCTCTTCCTGGTCATTCGCAACGAGTTACCCGGTTTTGCGATTACAAA
CCTGATCAACGGCTGTCAGGTGCTCGTTTGCACAATGGATCTCCTTTTCG
TGAACGCCTTAGAGGTGCCCCGATCCGTAGTTATCCGCCGGGAGTTCTCT
GGAGTGCCCAAGAATTGGGACACCGAAGACTTCAATCCTATTTTGCTAAA
TAAATATAGCGTGCTAGAAGCACTGGGAGAACTGATTCCCGAGCTACCAG
CGAAGGGAGTGGTGCAAATGAAGAACGCCTTTTTCCACAAAGCCTTAATA
ATGCTCTATATGGACCATAGTCTAGTTGGAGACGACACCCATATGCGGGA
GATCATTAAGGAGGGTATGCTAGATATCAATCTGGAAAACTTAAATCGCA
AATACACCAATCAAGTAGCCGACATTAGTGAGATGGACGAGCGTGTGCTG
CTCAGCGTCCAGGGGGCGATAGAGACCAAAGGGGACTCTCCTAAAAGCCC
ACAGCTCGCCTTCCAAACAAGCTCGTCACCTTCGCATAGGAAGCTGTCCA
CCCATGATCTACCAGCAAGTCTTCCCCTAAGCATTATAAAAGCATTCCCC
AAGAAGGAAGACGCAGATAAAATTGTAAATTATTTAGATCAAACTCTGGA
AGAAATGAATCGGACCTTTACCATGGCCGTGAAAGATTTTTTGGATGCTG
AGTTGTCTGGAAAACGATTCCGCCAGGCCAGAGGCCTTTACTACAAATAT
TTGCAGAAAATTTTGGGACCGGAGCTGGTTCAAAAACCACAGCTGAAGAT
TGGTCAGTTAATGAAGCAGCGCAAGCTTACCGCCGCCCTGTTAGCTTGCT
GCCTGGAACTGGCACTTCACGTCCACCACAAACTAGTGGAAGGCCTAAGG
TTTCCCTTTGTCCTGCACTGCTTTTCACTGGACGCCTACGACTTTCAAAA
GATTCTAGAGTTGGTGGTGCGCTACGATCATGGTTTTCTGGGCAGAGAGC
TGATCAAGCACCTGGATGTGGTGGAGGAAATGTGCCTGGACTCGTTGATT
TTCCGCAAGAGCTCACAGCTGTGGTGGGAGCTAAATCAAAGACTTCCCCG
CTACAAGGAAGTCGATGCAGAAACAGAAGACAAGGAGAACTTTTCAACAG
GCTCAAGCATCTGCCTTCGAAAGTTCTACGGACTGGCCAACCGGCGGCTG
CTCCTTCTGTGTAAGAGTCTTTGCCTCGTGGATTCCTTTCCCCAAATATG
GCACCTGGCCGAGCACTCTTTCACCTTAGAGAGTAGCCGTCTGCTCCGCA
ATCGACACCTGGACCAACTGCTGTTGTGCGCCATACATCTTCATGTTCGG
CTCGAGAAGCTTCACCTCACTTTCAGCATGATTATCCAGCACTATCGCCG
ACAGCCGCACTTTCGGAGAAGCGCTTACCGAGAGGTTAGCTTGGGCAATG
GTCAGACCGCTGATATTATCACTTTCTACAACAGTGTGTATGTCCAAAGT
ATGGGCAACTATGGCCGCCACCTGGAGTGTGCGCAAACACGCAAGTCACT
GGAAGAATCACAGAGTAACGTTGGTATTCTGACGGAAACAACTTCCAACG
AATTGAGCATGAGAGCCAACATCAGCATATCTTCACCGCCCCCTCCCAGG
GTATGCCAAAGTGGCTCCTGCTCCAGTCATCCACCTTCATCTCCCGCCGC
ATCACCACTTTCCTTGCAAAGCTCGCCCAACGTAAAGCGTGCTGCTTCGA
GTAACGACTTGATGAGAGAGATCAAGCGACCAAACATCCTGCGGCGTCGC
CAGCTTTCAGTGATCGCAAGCTTTCTAGACCAT
BO12446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf2-RA | 2352 | CG5083-PA | 1..2349 | 17..2365 | 11745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf2-RA | 2693 | CG5083-RA | 161..2509 | 17..2365 | 11745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15965606..15967954 | 17..2365 | 11745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:41:49 has no hits.
BO12446.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:20 Download gff for
BO12446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf2-RA | 156..2504 | 17..2367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:00 Download gff for
BO12446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf2-RA | 156..2504 | 17..2367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:43 Download gff for
BO12446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf2-RA | 156..2504 | 17..2367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:43 Download gff for
BO12446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf2-RA | 161..2509 | 17..2367 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:43 Download gff for
BO12446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15965606..15967954 | 17..2367 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:00 Download gff for
BO12446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11791328..11793676 | 17..2367 | 99 | | Plus |
BO12446.3prime Sequence
748 bp (721 high quality bases) assembled on 2006-05-08
> BO12446.3prime
ATGGTCTAGAAAGCTTGCGATCACTGAAAGCTGGCGACGCCGCAGGATGT
TTGGTCGCTTGATCTCTCTCATCAAGTCGTTACTCGAAGCAGCACGCTTT
ACGTTGGGCGAGCTTTGCAAGGAAAGTGGTGATGCGGCGGGAGATGAAGG
TGGATGACTGGAGCAGGAGCCACTTTGGCATACCCTGGGAGGGGGCGGTG
AAGATATGCTGATGTTGGCTCTCATGCTCAATTCGTTGGAAGTTGTTTCC
GTCAGAATACCAACGTTACTCTGTGATTCTTCCAGTGACTTGCGTGTTTG
CGCACACTCCAGGTGGCGGCCATAGTTGCCCATACTTTGGACATACACAC
TGTTGTAGAAAGTGATAATATCAGCGGTCTGACCATTGCCCAAGCTAACC
TCTCGGTAAGCGCTTCTCCGAAAGTGCGGCTGTCGGCGATAGTGCTGGAT
AATCATGCTGAAAGTGAGGTGAAGCTTCTCGAGCCGAACATGAAGATGTA
TGGCGCACAACAGCAGTTGGTCCAGGTGTCGATTGCGGAGCAGACGGCTA
CTCTCTAAGGTGAAAGAGTGCTCGGCCAGGTGCCATATTTGGGGAAAGGA
ATCCACGAGGCAAAGACTCTTACACAGAAGGAGCAGCCGCCGGTTGGCCA
GTCCGTAGAACTTTCGAAGGCAGATGCTTGAGCCTGTTGAAAAGTTCTCC
TTGTCTTCTGTTTCTGCATCGACCTCCTTGTAGCGGGGAAGTCTTTGA
BO12446.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5083-PA | 2352 | Rbf2-RA | 1620..2349 | 748..19 | 3625 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf2-RA | 2693 | CG5083-RA | 1780..2509 | 748..19 | 3635 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15967225..15967954 | 748..19 | 3635 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:16:20 has no hits.
BO12446.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:03 Download gff for
BO12446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf2-PA | 1621..2352 | 15..747 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:58 Download gff for
BO12446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5083-PA | 1621..2352 | 15..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:58:06 Download gff for
BO12446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf2-RA | 1776..2507 | 15..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:03:15 Download gff for
BO12446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf2-RA | 1781..2512 | 15..747 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:03:15 Download gff for
BO12446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15967226..15967957 | 15..747 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:58:06 Download gff for
BO12446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11792948..11793679 | 15..747 | 99 | | Minus |
BO12446.5prime Sequence
794 bp (711 high quality bases) assembled on 2006-05-08
> BO12446.5prime
GAAGTTATCCCTCGACGTGGAGACTTGTGAAGTGGAGGGAGAGGCGGAGA
CGCTGGTGAGACGCTTCTCCGTCAGCTGCGAGCAATTGGAGCTGGAAGCG
AGAATTCAGCAAAGCGCTCTGTCCACCTACCATCGCTTGGATGCGGTCAA
CGGGCTGTCCACCAGCGAGGCAGATGCCCAGGAGTGGCTGTGTTGCGCCG
TCTACAGCGAACTGCAGCGCTCGAAGATGCGCGATATTAGGGAGTCCATC
AACGAGGCAAACGATTCGGTGGCCAAGAACTGCTGCTGGAACGTGTCACT
AACCCGTCTGCTGCGCAGCTTTAAGATGAACGTGTCCCAGTTTCTACGCC
GCATGGAGCACTGGAATTGGCTGACCCAAAACGAGAACACTTTCCAGCTG
GAGGTTGAGGAACTGCGTTGTCGACTTGGTATTACTTCGACGCTGCTGCG
GCATTATAAGCACATCTTTCGGAGCCTGTTCGTTCACCCCGGCAAGGGTG
CGGACCCGGGTGCCGCGAATCACTACCAAGCGCTGTATGAGTTCGGTTGG
TTGCTCTTCCTGGTCATTCGCAACGAGTTACCCGGTTTTGCGATTACAAA
CCTGATCAACGGCTGTCAGGTGCTCGTTTGCACAATGGATCTCCTTTTCG
TGAACGCCTTAGAGGTGCCCCGATCCGTAGTTATCCGCCGGGAGTTCTCT
GGAGTGCCCCAAGAATTGGGACACCGAAGACTTCAATCCTATTTTGCTAA
ATAAATATAGCGTGCTTGAAGCACTGGGGAGAACTGATTCCCGA
BO12446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5083-PA | 2352 | Rbf2-RA | 2..693 | 18..709 | 3460 | 100 | Plus |
| CG5083-PA | 2352 | Rbf2-RA | 691..761 | 708..778 | 330 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf2-RA | 2693 | CG5083-RA | 162..936 | 18..794 | 3820 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15965607..15966381 | 18..794 | 3770 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:34:43 has no hits.
BO12446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:04 Download gff for
BO12446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf2-PA | 2..775 | 18..793 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:00 Download gff for
BO12446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5083-PA | 2..775 | 18..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:29 Download gff for
BO12446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf2-RA | 149..930 | 10..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:58 Download gff for
BO12446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbf2-RA | 154..935 | 10..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:58 Download gff for
BO12446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15965599..15966380 | 10..793 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:29 Download gff for
BO12446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11791321..11792102 | 10..793 | 99 | | Plus |
BO12446.pep Sequence
Translation from 16 to 2383
> BO12446.pep
METCEVEGEAETLVRRFSVSCEQLELEARIQQSALSTYHRLDAVNGLSTS
EADAQEWLCCAVYSELQRSKMRDIRESINEANDSVAKNCCWNVSLTRLLR
SFKMNVSQFLRRMEHWNWLTQNENTFQLEVEELRCRLGITSTLLRHYKHI
FRSLFVHPGKGADPGAANHYQALYEFGWLLFLVIRNELPGFAITNLINGC
QVLVCTMDLLFVNALEVPRSVVIRREFSGVPKNWDTEDFNPILLNKYSVL
EALGELIPELPAKGVVQMKNAFFHKALIMLYMDHSLVGDDTHMREIIKEG
MLDINLENLNRKYTNQVADISEMDERVLLSVQGAIETKGDSPKSPQLAFQ
TSSSPSHRKLSTHDLPASLPLSIIKAFPKKEDADKIVNYLDQTLEEMNRT
FTMAVKDFLDAELSGKRFRQARGLYYKYLQKILGPELVQKPQLKIGQLMK
QRKLTAALLACCLELALHVHHKLVEGLRFPFVLHCFSLDAYDFQKILELV
VRYDHGFLGRELIKHLDVVEEMCLDSLIFRKSSQLWWELNQRLPRYKEVD
AETEDKENFSTGSSICLRKFYGLANRRLLLLCKSLCLVDSFPQIWHLAEH
SFTLESSRLLRNRHLDQLLLCAIHLHVRLEKLHLTFSMIIQHYRRQPHFR
RSAYREVSLGNGQTADIITFYNSVYVQSMGNYGRHLECAQTRKSLEESQS
NVGILTETTSNELSMRANISISSPPPPRVCQSGSCSSHPPSSPAASPLSL
QSSPNVKRAASSNDLMREIKRPNILRRRQLSVIASFLDH
BO12446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbf2-PA | 783 | CG5083-PA | 1..783 | 1..783 | 4059 | 100 | Plus |
| Rbf-PA | 845 | CG7413-PA | 26..707 | 11..682 | 690 | 28.8 | Plus |
