Clone Sequence Records
BO12453.3prime Sequence
897 bp (847 high quality bases) assembled on 2006-05-08
> BO12453.3prime
ATGGTCTAGAAAGCTTGCATGGTTGGCAGTTTTGTTAATCTTTTCCTTGT
CGTCACTATCATTCTCATTGTCATCGGTCTCTTGATCCTTATCCGTGTCG
GTTTTGTTATCGTTATTATCCTGCGCTTGCTGCAGAGCCTTTTGAGCAGC
GCGATCTTGTTGTGATTTTTCCCAGGCCAGCTCAAAGGGATACTCCAAGG
GTTTCAGTTCGTCGGGGCACTCCTCCTGATTCGGAGCAGTGGCTTGGCTA
ATGGAAGCGCCACGCGTGTGGATCTGCTCCAGCTGAGCGGCGGTGTGGAC
CTCTGAATTGAGACCCGTAATAAACTCGAACAACTGCTCCTTGGTGTAAA
TGTTGGGCAGGCCGCGTCGTTCAAAGAAGTTAACAATGTTGCCGCAATCC
CTCATCAGGAACTCCAGGGCACTGGGATGCTTCGGTTCGACACTCTGGGC
CACGTCAATAAACCAGCACTTGCCCTCGAACCAGAGTATGTTATATTCGC
TCATATCGGCGTGCACCAGCTTCGCCTCATTGTACAACTTGTGCATCGCG
GCCACAATCTCTTCGTAGGCGCAACTCAGCTCCGCGTCGCTCAGACGGGC
ATCCTTTAACTTGGGCGCAGCGTTATGATTGTCACCGATGAACCGCATTA
CCAGCACGTGCTTCTTCAGCACAACAACGTCTGGAACGTTTAGGCCAATG
GCTTGCATCCTCATCAGATTATGCATCTCCTTCTCGGCCCACATATTGAT
AATCACTCGGTGGTTTTGTTTGCTAAAGCGATCCTTGAACCGATAGTCAT
CCTTGATGTATCTATCGCGCTGCTTGAACTCGTTGAGCGTGGTTTTAAAG
ATTTTAATGGCACACTCCCGGGGCAAAAGCTGCGGTGGAACGAGCAC
BO12453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3008-PA | 1812 | CG3008-RA | 931..1809 | 897..19 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3008-RA | 2263 | CG3008-RA | 1222..2100 | 897..19 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:24:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4884628..4885506 | 897..19 | 4395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:24:54 has no hits.
BO12453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:16 Download gff for
BO12453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-PA | 931..1812 | 16..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:12 Download gff for
BO12453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-PA | 931..1812 | 16..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:26:31 Download gff for
BO12453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 1222..2111 | 7..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:28 Download gff for
BO12453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 1222..2111 | 7..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:28 Download gff for
BO12453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4884628..4885517 | 7..897 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:26:31 Download gff for
BO12453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4884628..4885517 | 7..897 | 99 | | Minus |
BO12453.5prime Sequence
890 bp (760 high quality bases) assembled on 2006-05-08
> BO12453.5prime
GAAGTTATCAGTCGACATGTCGTCGCCATGGGTTAAGACCAGCGAGCCTG
TGCAGCAGGTGAATCTGGCGGATATAATGTCGGAGCAATATGCCCACAAG
TTGCACGACAAGGAGCTGCAGCGCCACACGGAGAAGCTGAAAAGACCGGA
CGAACAGATAGCACCCGTTTGGGGGTCGCAAGCCTCATCCCCGCCAGCGC
CCAATGCGCAGAGTATCCAAAGTGATGCGGAGGATTGGGAGGATTACTCT
GCGCTCCTCAATGACGAAGGAAACGTAGCGGAGGACATTCAGCTGCCGGA
AGACAGCGATGCAGTTATTGCCCAGCTGTTGCAGTCCCAGTTCGATCACG
AGTACAATGAGGAATTGCGTCGTATCGAGCGGCAGCAAAACAAGCAATCC
AAGGTCACTGTTACCCTCAATAAGTTCCTACGTGATGGCGATGCAGAGTT
CTTGCACGACACCGCGGAAGATGACTACGAAGAGGATGAATTGGAGCAAC
AGAAGCACGACTGGGATCGGTTCGAGGACAATGAACGGCAGCTTGACTCC
ATACCTCGCTGCGGCTTTAAAGTTAACAAGGAGGGCGAGATGATAACAAA
GCACGATCCGCAGCTGTGCGCCGTGCGTAATGCCCAGCGCGTGATGTCCT
TTCCGCCGGAGTTTCCCACCGGTGATGCTGCCGGTTTCGACATGAAGCTC
TCCAATAAGGTGTTTAACCAACTACGAGCCCATTCTCGACGAGGCCGCTC
CGACAAGCACGAGAAAGTGGCCACCGCGGAGATGGGATTGGATGCGGGTA
CACGTTTGCTGCTGTACAAGCTGATCAATAACCAAATACTGGAGCAGATC
AACGGCATTATATCCACGGGCAAGGAGGCGGTCATCTTGC
BO12453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3008-PA | 1812 | CG3008-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3008-RA | 2263 | CG3008-RA | 292..1165 | 17..890 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4883647..4884341 | 17..711 | 3475 | 100 | Plus |
| 2L | 23513712 | 2L | 4884389..4884571 | 708..890 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:31:00 has no hits.
BO12453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:36:16 Download gff for
BO12453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:14 Download gff for
BO12453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:12:22 Download gff for
BO12453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 279..1165 | 2..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:31 Download gff for
BO12453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 279..1165 | 2..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:31 Download gff for
BO12453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4884391..4884571 | 710..890 | 100 | | Plus |
| 2L | 4883645..4884339 | 14..709 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:12:22 Download gff for
BO12453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4883645..4884339 | 14..709 | 99 | -> | Plus |
| arm_2L | 4884391..4884571 | 710..890 | 100 | | Plus |
BO12453.complete Sequence
1843 bp assembled on 2008-01-17
GenBank Submission: FJ632446
> BO12453.complete
GAAGTTATCAGTCGACATGTCGTCGCCATGGGTTAAGACCAGCGAGCCTG
TGCAGCAGGTGAATCTGGCGGATATAATGTCGGAGCAATATGCCCACAAG
TTGCACGACAAGGAGCTGCAGCGCCACACGGAGAAGCTGAAAAGACCGGA
CGAACAGATAGCACCCGTTTGGGGGTCGCAAGCCTCATCCCCGCCAGCGC
CCAATGCGCAGAGTATCCAAAGTGATGCGGAGGATTGGGAGGATTACTCT
GCGCTCCTCAATGACGAAGGAAACGTAGCGGAGGACATTCAGCTGCCGGA
AGACAGCGATGCAGTTATTGCCCAGCTGTTGCAGTCCCAGTTCGATCACG
AGTACAATGAGGAATTGCGTCGTATCGAGCGGCAGCAAAACAAGCAATCC
AAGGTCACTGTTACCCTCAATAAGTTCCTACGTGATGGCGATGCAGAGTT
CTTGCACGACACCGCGGAAGATGACTACGAAGAGGATGAATTGGAGCAAC
AGAAGCACGACTGGGATCGGTTCGAGGACAATGAACGGCAGCTTGACTCC
ATACCTCGCTGCGGCTTTAAAGTTAACAAGGAGGGCGAGATGATAACAAA
GCACGATCCGCAGCTGTGCGCCGTGCGTAATGCCCAGCGCGTGATGTCCT
TTCCGCCGGAGTTTCCCACCGGTGATGCTGCCGGTTTCGACATGAAGCTC
TCCAATAAGGTGTTTAACCAACTACGAGCCCATTCTCGACGAGGCCGCTC
CGACAAGCACGAGAAAGTGGCCACCGCGGAGATGGGATTGGATGCGGGTA
CACGTTTGCTGCTGTACAAGCTGATCAATAACCAAATACTGGAGCAGATC
AACGGCATTATATCCACGGGCAAGGAGGCGGTCATCTTGCACGCCAATTC
CGATGCGAACTATACGGGCAGCAACGAGCATGGTCACCAGAGTGGTGTGC
TCGTTCCACCGCAGCTTTTGCCCCGGGAGTGTGCCATTAAAATCTTTAAA
ACCACGCTCAACGAGTTCAAGCAGCGCGATAGATACATCAAGGATGACTA
TCGGTTCAAGGATCGCTTTAGCAAACAAAACCACCGAGTGATTATCAATA
TGTGGGCCGAGAAGGAGATGCATAATCTGATGAGGATGCAAGCCATTGGC
CTAAACGTTCCAGACGTTGTTGTGCTGAAGAAGCACGTGCTGGTAATGCG
GTTCATCGGTGACAATCATAACGCTGCGCCCAAGTTAAAGGATGCCCGTC
TGAGCGACGCGGAGCTGAGTTGCGCCTACGAAGAGATTGTGGCCGCGATG
CACAAGTTGTACAATGAGGCGAAGCTGGTGCACGCCGATATGAGCGAATA
TAACATACTCTGGTTCGAGGGCAAGTGCTGGTTTATTGACGTGGCCCAGA
GTGTCGAACCGAAGCATCCCAGTGCCCTGGAGTTCCTGATGAGGGATTGC
GGCAACATTGTTAACTTCTTTGAACGACGCGGCCTGCCCAACATTTACAC
CAAGGAGCAGTTGTTCGAGTTTATTACGGGTCTCAATTCAGAGGTCCACA
CCGCCGCTCAGCTGGAGCAGATCCACACGCGTGGCGCTTCCATTAGCCAA
GCCACTGCTCCGAATCAGGAGGAGTGCCCCGACGAACTGAAACCCTTGGA
GTATCCCTTTGAGCTGGCCTGGGAAAAATCACAACAAGATCGCGCTGCTC
AAAAGGCTCTGCAGCAAGCGCAGGATAATAACGATAACAAAACCGACACG
GATAAGGATCAAGAGACCGATGACAATGAGAATGATAGTGACGACAAGGA
AAAGATTAACAAAACTGCCAACCATGCAAGCTTTCTAGACCAT
BO12453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3008-RA | 1812 | CG3008-PA | 1..1809 | 17..1825 | 9045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3008-RA | 2263 | CG3008-RA | 292..2100 | 17..1825 | 9045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4884389..4885506 | 708..1825 | 5590 | 100 | Plus |
| 2L | 23513712 | 2L | 4883647..4884341 | 17..711 | 3475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:54:17 has no hits.
BO12453.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:35 Download gff for
BO12453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 1..1812 | 17..1828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:32 Download gff for
BO12453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 419..2227 | 17..1827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:35 Download gff for
BO12453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 292..2100 | 17..1827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:36 Download gff for
BO12453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 278..2110 | 2..1837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:21 Download gff for
BO12453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 292..2100 | 17..1827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:21 Download gff for
BO12453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4883647..4884339 | 17..709 | 100 | -> | Plus |
| 2L | 4884391..4885506 | 710..1827 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:35 Download gff for
BO12453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4883647..4884339 | 17..709 | 100 | -> | Plus |
| arm_2L | 4884391..4885506 | 710..1827 | 99 | | Plus |
BO12453.pep Sequence
Translation from 16 to 1843
> BO12453.pep
MSSPWVKTSEPVQQVNLADIMSEQYAHKLHDKELQRHTEKLKRPDEQIAP
VWGSQASSPPAPNAQSIQSDAEDWEDYSALLNDEGNVAEDIQLPEDSDAV
IAQLLQSQFDHEYNEELRRIERQQNKQSKVTVTLNKFLRDGDAEFLHDTA
EDDYEEDELEQQKHDWDRFEDNERQLDSIPRCGFKVNKEGEMITKHDPQL
CAVRNAQRVMSFPPEFPTGDAAGFDMKLSNKVFNQLRAHSRRGRSDKHEK
VATAEMGLDAGTRLLLYKLINNQILEQINGIISTGKEAVILHANSDANYT
GSNEHGHQSGVLVPPQLLPRECAIKIFKTTLNEFKQRDRYIKDDYRFKDR
FSKQNHRVIINMWAEKEMHNLMRMQAIGLNVPDVVVLKKHVLVMRFIGDN
HNAAPKLKDARLSDAELSCAYEEIVAAMHKLYNEAKLVHADMSEYNILWF
EGKCWFIDVAQSVEPKHPSALEFLMRDCGNIVNFFERRGLPNIYTKEQLF
EFITGLNSEVHTAAQLEQIHTRGASISQATAPNQEECPDELKPLEYPFEL
AWEKSQQDRAAQKALQQAQDNNDNKTDTDKDQETDDNENDSDDKEKINKT
ANHASFLDH
BO12453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3008-PA | 603 | CG3008-PA | 1..603 | 1..603 | 3176 | 100 | Plus |
| RIOK1-PB | 585 | CG11660-PB | 66..540 | 148..604 | 578 | 31.9 | Plus |
| RIOK1-PA | 585 | CG11660-PA | 66..540 | 148..604 | 578 | 31.9 | Plus |
